View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0765_high_13 (Length: 259)

Name: NF0765_high_13
Description: NF0765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0765_high_13
NF0765_high_13
[»] chr3 (6 HSPs)
chr3 (1-144)||(4226928-4227072)
chr3 (1-159)||(4235958-4236117)
chr3 (3-89)||(12094906-12094992)
chr3 (3-89)||(40931944-40932029)
chr3 (40-89)||(38805512-38805561)
chr3 (57-89)||(38805591-38805623)
[»] chr8 (5 HSPs)
chr8 (3-89)||(8697541-8697627)
chr8 (3-89)||(10646916-10647002)
chr8 (3-89)||(40486101-40486187)
chr8 (3-89)||(41307642-41307728)
chr8 (3-89)||(45278344-45278430)
[»] chr1 (2 HSPs)
chr1 (3-89)||(3943384-3943470)
chr1 (3-89)||(9588994-9589080)
[»] chr7 (1 HSPs)
chr7 (3-89)||(2911191-2911277)


Alignment Details
Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 4227072 - 4226928
Alignment:
Q  1 atacaaattttaattcaactttggcggtaaacattttaagattagagtataaataatggagggaagtttttcaattgagttt-gaaaaaattgataactg 99  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||  ||||||||||||||||    
T  4227072 atacaaattttaatttaactttggtggtaaacattttaagattagaatataactaagggagggaagtttttcaattgagtttaaaaaaaattgataactg 4226973  T
Q  100 aagtattatgtcatttaaataagtgaagttgaaaataaattaatt 144  Q
    ||| |||||| |||||| ||||||| |||||||||  ||||||||    
T  4226972 aagcattatgccatttagataagtggagttgaaaaagaattaatt 4226928  T

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Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 4236117 - 4235958
Alignment:
Q  1 atacaaattttaattcaactttggcggtaaacattttaagattagagtataaataatggagggaagtttttcaattgagttt-gaaaaaattgataactg 99  Q
    |||||||||||||||  ||||||| ||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||  ||||||||||||||||    
T  4236117 atacaaattttaatttcactttggtggtaaacattttaagattagaatataactaagggagggaagtttttcaattgagtttaaaaaaaattgataactg 4236018  T
Q  100 aagtattatgtcatttaaataagtgaagttgaaaataaattaattagtactgatattacc 159  Q
    ||| |||||| |||||| ||||||| |||||||||  |||||||| ||| || |||||||    
T  4236017 aagcattatgccatttagataagtggagttgaaaaataattaattggtattggtattacc 4235958  T

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Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 89
Target Start/End: Complemental strand, 12094992 - 12094906
Alignment:
Q  3 acaaattttaattcaactttggcggtaaacattttaagattagagtataaataatggagggaagtttttcaattgagtttgaaaaaa 89  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||| ||| ||||||    
T  12094992 acaaattttaatttaactttggtggtaaacattttaagattagagtataaattttggagggaagtttttcaattgaatttaaaaaaa 12094906  T

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Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 89
Target Start/End: Complemental strand, 40932029 - 40931944
Alignment:
Q  3 acaaattttaattcaactttggcggtaaacattttaagattagagtataaataatggagggaagtttttcaattgagtttgaaaaaa 89  Q
    ||||||||||||| |||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||| ||||||    
T  40932029 acaaattttaatttaactttggtggtaaacattttaagattaaa-tataaataatggagggaagtttttcaattgattttaaaaaaa 40931944  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 38805561 - 38805512
Alignment:
Q  40 gattagagtataaataatggagggaagtttttcaattgagtttgaaaaaa 89  Q
    |||||||||||||||  |||||||||||||||||||||||||| ||||||    
T  38805561 gattagagtataaattttggagggaagtttttcaattgagttttaaaaaa 38805512  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 89
Target Start/End: Complemental strand, 38805623 - 38805591
Alignment:
Q  57 tggagggaagtttttcaattgagtttgaaaaaa 89  Q
    |||||||||||||||||||||||||| ||||||    
T  38805623 tggagggaagtttttcaattgagttttaaaaaa 38805591  T

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Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 3 - 89
Target Start/End: Original strand, 8697541 - 8697627
Alignment:
Q  3 acaaattttaattcaactttggcggtaaacattttaagattagagtataaataatggagggaagtttttcaattgagtttgaaaaaa 89  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||    
T  8697541 acaaattttaatttaactttggtggtaaacattttaagattagagtataaattttggagggaagtttttcaattgagtttaaaaaaa 8697627  T

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Target: chr8; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 3 - 89
Target Start/End: Complemental strand, 10647002 - 10646916
Alignment:
Q  3 acaaattttaattcaactttggcggtaaacattttaagattagagtataaataatggagggaagtttttcaattgagtttgaaaaaa 89  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||    
T  10647002 acaaattttaatttaactttggtggtaaacattttaagattagagtataaattttggagggaagtttttcaattgagtttaaaaaaa 10646916  T

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Target: chr8; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 3 - 89
Target Start/End: Original strand, 40486101 - 40486187
Alignment:
Q  3 acaaattttaattcaactttggcggtaaacattttaagattagagtataaataatggagggaagtttttcaattgagtttgaaaaaa 89  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||    
T  40486101 acaaattttaatttaactttggtggtaaacattttaagattagagtataaattttggagggaagtttttcaattgagtttaaaaaaa 40486187  T

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Target: chr8; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 3 - 89
Target Start/End: Original strand, 41307642 - 41307728
Alignment:
Q  3 acaaattttaattcaactttggcggtaaacattttaagattagagtataaataatggagggaagtttttcaattgagtttgaaaaaa 89  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||    
T  41307642 acaaattttaatttaactttggtggtaaacattttaagattagagtataaattttggagggaagtttttcaattgagtttaaaaaaa 41307728  T

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Target: chr8; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 89
Target Start/End: Original strand, 45278344 - 45278430
Alignment:
Q  3 acaaattttaattcaactttggcggtaaacattttaagattagagtataaataatggagggaagtttttcaattgagtttgaaaaaa 89  Q
    ||||||||||||| |||||||| || ||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||    
T  45278344 acaaattttaatttaactttggtgggaaacattttaagattagagtataaattttggagggaagtttttcaattgagtttaaaaaaa 45278430  T

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Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 89
Target Start/End: Complemental strand, 3943470 - 3943384
Alignment:
Q  3 acaaattttaattcaactttggcggtaaacattttaagattagagtataaataatggagggaagtttttcaattgagtttgaaaaaa 89  Q
    ||||||||||||| |||||||| || ||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||    
T  3943470 acaaattttaatttaactttggtgggaaacattttaagattagagtataaattttggagggaagtttttcaattgagtttaaaaaaa 3943384  T

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Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 89
Target Start/End: Complemental strand, 9589080 - 9588994
Alignment:
Q  3 acaaattttaattcaactttggcggtaaacattttaagattagagtataaataatggagggaagtttttcaattgagtttgaaaaaa 89  Q
    ||||||||||||| |||||||| ||||||||||||||||||| |||||||||  |||||||||||||||||||||||||| ||||||    
T  9589080 acaaattttaatttaactttggtggtaaacattttaagattaaagtataaattttggagggaagtttttcaattgagtttaaaaaaa 9588994  T

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Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 89
Target Start/End: Original strand, 2911191 - 2911277
Alignment:
Q  3 acaaattttaattcaactttggcggtaaacattttaagattagagtataaataatggagggaagtttttcaattgagtttgaaaaaa 89  Q
    ||||||||||||| |||||||| || ||||||||||||||||||||||||||  |||||| ||||||||||||||||||| ||||||    
T  2911191 acaaattttaatttaactttggtgggaaacattttaagattagagtataaattttggaggaaagtttttcaattgagtttaaaaaaa 2911277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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