View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0765_high_15 (Length: 251)
Name: NF0765_high_15
Description: NF0765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0765_high_15 |
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| [»] chr8 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 119; Significance: 7e-61; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 54 - 251
Target Start/End: Original strand, 41307398 - 41307598
Alignment:
| Q |
54 |
tgttgttttcttcttgtgtagcaaagttttcttccttaccatttaaatcgtgtagttcttcatttgaatcaaacagcggctcttcatttaaatcaaacaa |
153 |
Q |
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||||| |||||||| |||| ||||||||||||||| |||||||||||| ||||| |||| |||| |||||||||| ||||||||||||||||||||||| |
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| T |
41307398 |
tgttgctttcttctcctgtaacaaagttttcttcctcaccatttaaatcatgtagatcttgatttaaatcaaacagtggctcttcatttaaatcaaacaa |
41307497 |
T |
|
| Q |
154 |
tggttcttcatttaaatcaaatggaaaagcattgagatccatcgaaaaaatttgttctaaat---taatataaatttgataaatgagtatcaaactctta |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | |||| |||||||| || |||||||||||||||||||||||| | |||||||| |
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| T |
41307498 |
tggttcttcatttaaatcaaatggaaaagcattgagatccatagcaaaattttgttcttcatgaataatataaatttgataaatgagtacctaactctta |
41307597 |
T |
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| Q |
251 |
t |
251 |
Q |
| |
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| T |
41307598 |
t |
41307598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 54 - 251
Target Start/End: Original strand, 8697297 - 8697497
Alignment:
| Q |
54 |
tgttgttttcttcttgtgtagcaaagttttcttccttaccatttaaatcgtgtagttcttcatttgaatcaaacagcggctcttcatttaaatcaaacaa |
153 |
Q |
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||||| |||||||| | || ||||||||||||||| |||||||||||| ||||| |||| |||| |||||||||| ||||||||||||||||||||||| |
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| T |
8697297 |
tgttgctttcttctcctataacaaagttttcttcctcaccatttaaatcatgtagatcttgatttaaatcaaacagtggctcttcatttaaatcaaacaa |
8697396 |
T |
|
| Q |
154 |
tggttcttcatttaaatcaaatggaaaagcattgagatccatcgaaaaaatttgttctaaat---taatataaatttgataaatgagtatcaaactctta |
250 |
Q |
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| T |
8697397 |
tggttcttcatttaaatcaaatggaaaagcattgagatccatagcaaaattttgttcttcatgaataatataaatttgataaatgagtacctaactctta |
8697496 |
T |
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| Q |
251 |
t |
251 |
Q |
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| T |
8697497 |
t |
8697497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 70 - 251
Target Start/End: Complemental strand, 9589308 - 9589124
Alignment:
| Q |
70 |
tgtagcaaagttttcttccttaccatttaaatcgtgtagttcttcatttgaatcaaacagcggctcttcatttaaatcaaacaatggttcttcatttaaa |
169 |
Q |
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|||||||||||||||||||| |||||||||||| ||||| |||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
9589308 |
tgtagcaaagttttcttcctcaccatttaaatcatgtagatcttgatttaaatcaaacagtggctcttcatttaaatcaaacaatggttcttcatttaaa |
9589209 |
T |
|
| Q |
170 |
tcaaatggaaaagcattgagatccatcgaaaaaatttgttctaaat---taatataaatttgataaatgagtatcaaactcttat |
251 |
Q |
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|||||||||||||||||||||||||| | |||| |||||||| || |||||||||||||||||||||||| | ||||||||| |
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| T |
9589208 |
tcaaatggaaaagcattgagatccatagcaaaattttgttcttcatgaataatataaatttgataaatgagtacctaactcttat |
9589124 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 6e-55; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 79 - 251
Target Start/End: Complemental strand, 4236365 - 4236193
Alignment:
| Q |
79 |
gttttcttccttaccatttaaatcgtgtagttcttcatttgaatcaaacagcggctcttcatttaaatcaaacaatggttcttcatttaaatcaaatgga |
178 |
Q |
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||||||||||| |||||||||||| |||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4236365 |
gttttcttcctcaccatttaaatcatgtagttcttgatttaaatcaaatagcggctcttcatttaaatcaaacaatggttcttcatttaaatcaagcgga |
4236266 |
T |
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| Q |
179 |
aaagcattgagatccatcgaaaaaatttgttctaaattaatataaatttgataaatgagtatcaaactcttat |
251 |
Q |
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|||||||||||||||| ||| ||||||||| ||||||||||||||||||||| |||||| ||||||||| |
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| T |
4236265 |
aaagcattgagatccacaacgaaattttgttctacattaatataaatttgataaattagtatctaactcttat |
4236193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 54 - 239
Target Start/End: Complemental strand, 38805839 - 38805651
Alignment:
| Q |
54 |
tgttgttttcttcttgtgtagcaaagttttcttccttaccatttaaatcgtgtagttcttcatttgaatcaaacagcggctcttcatttaaatcaaacaa |
153 |
Q |
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||||| |||||||| |||||||||||||||||||| |||||||||||| ||||| |||| |||| ||||||||| |||| |||||||||||||||||| |
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| T |
38805839 |
tgttgctttcttctcctgtagcaaagttttcttcctcaccatttaaatcatgtagatcttgatttaaatcaaacaatggcttttcatttaaatcaaacaa |
38805740 |
T |
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| Q |
154 |
tggttcttcatttaaatcaaatggaaaagcattgagatccatcgaaaaaatttgttctaaat---taatataaatttgataaatgagta |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | ||| |||||||| || |||||||||||||||||||||||| |
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| T |
38805739 |
tggttcttcatttaaatcaaatggaaaagcattgagatccatagcaaatttttgttcttcatgaataatataaatttgataaatgagta |
38805651 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 16 - 249
Target Start/End: Complemental strand, 4227370 - 4227149
Alignment:
| Q |
16 |
atgactaatggactctccctagaaatccatcgtgtaactgttgttttcttcttgtgtagcaaagttttcttccttaccatttaaatcgtgtagttcttca |
115 |
Q |
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|||||||||||||||||||||||||| |||||||| ||||||| | || || ||||||||||| |||||||||||| |||||||||| | |
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| T |
4227370 |
atgactaatggactctccctagaaatacatcgtgtgactgttgct------------agaaaggttttcttcctcaccatttaaatcatgtagttcttga |
4227283 |
T |
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| Q |
116 |
tttgaatcaaacagcggctcttcatttaaatcaaacaatggttcttcatttaaatcaaatggaaaagcattgagatccatcgaaaaaatttgttctaaat |
215 |
Q |
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||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||| || |
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| T |
4227282 |
tttaaatcaaatagcggctcttcatttaaatcaaacaatggttcttcatttaaatcaaacagaaaagcattgagatccgcaacgaaattttgttctacat |
4227183 |
T |
|
| Q |
216 |
taatataaatttgataaatgagtatcaaactctt |
249 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||| |
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| T |
4227182 |
taatataaatttgataaattagtatctaactctt |
4227149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 104 - 251
Target Start/End: Complemental strand, 40932223 - 40932073
Alignment:
| Q |
104 |
tgtagttcttcatttgaatcaaacagcggctcttcatttaaatcaaacaatggttcttcatttaaatcaaatggaaaagcattgagatccatcgaaaaaa |
203 |
Q |
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|||||||||| |||| |||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
40932223 |
tgtagttcttgatttaaatccaacggtggctcttcatttaaatcaaacaatggttcttcatttaaatcaaatggaaaagcattgagatccatagcaaaat |
40932124 |
T |
|
| Q |
204 |
tttgttctaaat---taatataaatttgataaatgagtatcaaactcttat |
251 |
Q |
| |
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|||||||| || ||||||||||||||||||| |||| | ||||||||| |
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|
| T |
40932123 |
tttgttcttcattaataatataaatttgataaataagtacctaactcttat |
40932073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 218 - 251
Target Start/End: Complemental strand, 4227146 - 4227113
Alignment:
| Q |
218 |
atataaatttgataaatgagtatcaaactcttat |
251 |
Q |
| |
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|||||||||||||||||||||||| ||||||||| |
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|
| T |
4227146 |
atataaatttgataaatgagtatctaactcttat |
4227113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 4236416 - 4236375
Alignment:
| Q |
16 |
atgactaatggactctccctagaaatccatcgtgtaactgtt |
57 |
Q |
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| T |
4236416 |
atgactaatggactctccctcgaaatctatcgtgtgactgtt |
4236375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 46
Target Start/End: Complemental strand, 20543320 - 20543290
Alignment:
| Q |
16 |
atgactaatggactctccctagaaatccatc |
46 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
20543320 |
atgactaatggactctccctagaaatccatc |
20543290 |
T |
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