View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0765_high_16 (Length: 244)
Name: NF0765_high_16
Description: NF0765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0765_high_16 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 25742647 - 25742873
Alignment:
| Q |
17 |
atataccagctcatacactgcacagtcctagatatttcatcgttgtttattttgttctttcttgatcagtagaaaatgtggaacagaaagaatgttcaag |
116 |
Q |
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| T |
25742647 |
atataccagctcatacactgcacagtcctagatatttcatcgttgtttattttgtt-tttcttgatcagtagaaaatgtggaacagaatgaattttcaag |
25742745 |
T |
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| Q |
117 |
aagaagcagttcagattatgaactcagatttcaaagacctgagtgaagctgctagtaaactcgctaatcatgccatcaaattagctggtgcaggcggctt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
25742746 |
aagaagcagttcagattatgaactcagatttcaaagacctgagtgaagctgctagtaaactcgctaatcatgccatcaaattagctggtgtaggcggctt |
25742845 |
T |
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| Q |
217 |
tggagcttctttcttcggattctttgct |
244 |
Q |
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| T |
25742846 |
tggagcttctttcttcggattctttgct |
25742873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 62 - 244
Target Start/End: Original strand, 25739131 - 25739310
Alignment:
| Q |
62 |
tttattttgttctttcttgatcagtagaaaatgtggaacagaaagaatgttcaagaagaagcagttcagattatgaactcagatttcaaagacctgagtg |
161 |
Q |
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||||||||||||||||||||||| |||||||||||||||| || |||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
25739131 |
tttattttgttctttcttgatcaatagaaaatgtggaacaaaatgaattttcaagaagaagcagttcaggttatgaactcagatttcaaagacctgagtg |
25739230 |
T |
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| Q |
162 |
aagctgctagtaaactcgctaatcatgccatcaaattagctggtgcaggcggctttggagcttctttcttcggattctttgct |
244 |
Q |
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||| |||||| | |||||||||||||||||||||||| |||||| | |||| |||| ||||||||| |||||||||||| |
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| T |
25739231 |
aagttgctagcagactcgctaatcatgccatcaaattcgctggtata---ggctggggaggttctttctttggattctttgct |
25739310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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