View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0765_high_3 (Length: 483)
Name: NF0765_high_3
Description: NF0765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0765_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 2 - 418
Target Start/End: Complemental strand, 20140723 - 20140307
Alignment:
| Q |
2 |
acttaactttcactgtgagttttaattctataaaggaggatgtctatgtacgctatcgtcctcacctaaaagaattccttgacgaagtttctggtatttt |
101 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20140723 |
acttaactttcactgtgagttttaattctgtaaaggaggatgtctatgtacgctatcgtcctcacctaaaagaattccttgacgaagtttctggtatttt |
20140624 |
T |
|
| Q |
102 |
tgagattattgtatttactgctggtcaaagaatttatgctgacaaactcttaaataagcttgatccaagccggaagatatttcgtcatcgtctattccgt |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
20140623 |
tgagattattgtatttactgctggtcaaagaatttatgctgacaaactcttaaataagcttgatccaagccggaagatatttcgtcatcgtttattccgt |
20140524 |
T |
|
| Q |
202 |
gaatcctgtgttaatgtggacgaaaaatacgtcaaagatttatcaatactcggtcgtgatttagcacgtgttataatgattgacagctccccgcattcat |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
20140523 |
gaatcctgtgttaatgtggacgaaaaatacgtcaaagatttatcaatactcggtcgtgatttagcacgtgttacaatgattgacagctccccgcattcat |
20140424 |
T |
|
| Q |
302 |
ttgggttccaagtggagaatggaataccaattgagacttggtttgctgatccttcagataataaattgctttcattgattcctttcttggagaatttagt |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
20140423 |
ttgggttccaagtggagaatggaataccaattgagacttggtttgcagatccttcagataataaattgctttcattgattcctttcttggagagtttagt |
20140324 |
T |
|
| Q |
402 |
agaagttgatgatgtcc |
418 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
20140323 |
agaagttgatgatgtcc |
20140307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 8e-56; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 42 - 292
Target Start/End: Complemental strand, 38589243 - 38588993
Alignment:
| Q |
42 |
tgtctatgtacgctatcgtcctcacctaaaagaattccttgacgaagtttctggtatttttgagattattgtatttactgctggtcaaagaatttatgct |
141 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||| ||| ||||||| ||||||||| |
|
|
| T |
38589243 |
tgtctatgtacgctgccgtcctcacctaaaagaattccttgagagagtttctggtctttttgagattattatatttacagctagtcaaagtatttatgct |
38589144 |
T |
|
| Q |
142 |
gacaaactcttaaataagcttgatccaagccggaagatatttcgtcatcgtctattccgtgaatcctgtgttaatgtggacgaaaaatacgtcaaagatt |
241 |
Q |
| |
|
|| ||||| ||||| ||||||||||| |||||||||||||| |||||| ||||||||||||| |||||||| ||||| | || ||| ||||||||| |
|
|
| T |
38589143 |
gagcaactcctaaatttgcttgatccaaagcggaagatatttcgccatcgtgtattccgtgaatcttgtgttaaagtggaggggaattacctcaaagatt |
38589044 |
T |
|
| Q |
242 |
tatcaatactcggtcgtgatttagcacgtgttataatgattgacagctccc |
292 |
Q |
| |
|
|| || | || ||| |||||||||||| |||||| || ||||||| ||||| |
|
|
| T |
38589043 |
taacagtgcttggttgtgatttagcacatgttatgataattgacaactccc |
38588993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 42 - 293
Target Start/End: Complemental strand, 38595558 - 38595307
Alignment:
| Q |
42 |
tgtctatgtacgctatcgtcctcacctaaaagaattccttgacgaagtttctggtatttttgagattattgtatttactgctggtcaaagaatttatgct |
141 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| || || || ||| |||||| |||||||||||||| ||||||| ||| ||||||| ||||||||| |
|
|
| T |
38595558 |
tgtctatgtacgctgccgtcctcacctaaaagagtttctcgagagagtctctggtctttttgagattattatatttaccgctagtcaaagtatttatgct |
38595459 |
T |
|
| Q |
142 |
gacaaactcttaaataagcttgatccaagccggaagatatttcgtcatcgtctattccgtgaatcctgtgttaatgtggacgaaaaatacgtcaaagatt |
241 |
Q |
| |
|
|| ||||| |||| ||||||||| | |||||||||||||| |||||| |||||||||||||||||||| ||||||| | || ||| ||||||||| |
|
|
| T |
38595458 |
gagcaactcctaaacgtgcttgatccgaagcggaagatatttcgccatcgtgtattccgtgaatcctgtgtttatgtggaggggaattacctcaaagatt |
38595359 |
T |
|
| Q |
242 |
tatcaatactcggtcgtgatttagcacgtgttataatgattgacagctcccc |
293 |
Q |
| |
|
|| || | ||||||||||||||||||| |||||| || ||||||| |||||| |
|
|
| T |
38595358 |
taacagtgctcggtcgtgatttagcacatgttatgataattgacaactcccc |
38595307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 299 - 418
Target Start/End: Complemental strand, 38594028 - 38593909
Alignment:
| Q |
299 |
catttgggttccaagtggagaatggaataccaattgagacttggtttgctgatccttcagataataaattgctttcattgattcctttcttggagaattt |
398 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||| ||||||||| || ||||||||||||| | ||| |
|
|
| T |
38594028 |
catttggattccaagtggacaatggaataccaattgagagttggtttgatgatccttcagataaagaattgcttttgttacttcctttcttggaaagttt |
38593929 |
T |
|
| Q |
399 |
agtagaagttgatgatgtcc |
418 |
Q |
| |
|
|||| |||||||||||||| |
|
|
| T |
38593928 |
ggtaggagttgatgatgtcc |
38593909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 299 - 418
Target Start/End: Complemental strand, 38588505 - 38588386
Alignment:
| Q |
299 |
catttgggttccaagtggagaatggaataccaattgagacttggtttgctgatccttcagataataaattgctttcattgattcctttcttggagaattt |
398 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||| ||| |||||||| |||||||| ||||| ||||||||| ||| ||||||||||||||| ||| |
|
|
| T |
38588505 |
catttggattccaagtggacaatggaataccaattaagagttggtttggcgatccttcggataaagaattgcttttattacttcctttcttggagagttt |
38588406 |
T |
|
| Q |
399 |
agtagaagttgatgatgtcc |
418 |
Q |
| |
|
|||| |||||||||||||| |
|
|
| T |
38588405 |
ggtaggagttgatgatgtcc |
38588386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 41 - 201
Target Start/End: Complemental strand, 15836140 - 15835982
Alignment:
| Q |
41 |
atgtctatgtacgctatcgtcctcacctaaaagaattccttgacgaagtttctggtatttttgagattattgtatttactgctggtcaaagaatttatgc |
140 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| || || || |||||| ||||||| |
|
|
| T |
15836140 |
atgtctatgtacggtttcgtcctcacctaaaagaattcctttacgaagttcctggtctttttgagattattgta--tattgatgctcaaagtatttatga |
15836043 |
T |
|
| Q |
141 |
tgacaaactcttaaataagcttgatccaagccggaagatatttcgtcatcgtctattccgt |
201 |
Q |
| |
|
|||||||||| |||||| |||||| |||||||| || ||||| || |||||||||||||| |
|
|
| T |
15836042 |
tgacaaactcctaaatatgcttgacccaagccgaaaaatattctgttatcgtctattccgt |
15835982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 259 - 415
Target Start/End: Complemental strand, 15835956 - 15835801
Alignment:
| Q |
259 |
gatttagcacgtgttataatgattgacagctccccgcattcatttgggttccaagtggagaatggaataccaattgagacttggtttgctgatccttcag |
358 |
Q |
| |
|
||||||||| ||||||||||| |||| ||||| |||| |||| |||||||||||||||||| | ||| |||| ||| ||||||| |||||||||||| |
|
|
| T |
15835956 |
gatttagcatgtgttataatggttgaattctccca-cattaattttggttccaagtggagaatgaattactaattaagagttggttttctgatccttcag |
15835858 |
T |
|
| Q |
359 |
ataataaattgctttcattgattcctttcttggagaatttagtagaagttgatgatg |
415 |
Q |
| |
|
|| | ||||| ||| |||| ||||||||||| ||| ||| |||| ||||||||||| |
|
|
| T |
15835857 |
atgaagaattgattttattgcttcctttcttgaagagttttgtaggagttgatgatg |
15835801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3109 times since January 2019
Visitors: 4805