View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0765_high_4 (Length: 364)
Name: NF0765_high_4
Description: NF0765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0765_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 35189405 - 35189563
Alignment:
| Q |
1 |
tcactcaaactctattgctactactggtggtaataacatggagcaaagagaagagtgggaaattgatccttctaacctcatcatcaagagtgtcttagct |
100 |
Q |
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| T |
35189405 |
tcactcaaactctattgctactactggtggtaataacatggagcaaagagaagagtgggaaattgatccttctaacctcatcatcaagagtgtcttagct |
35189504 |
T |
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| Q |
101 |
cgtggcactttcggtactgttcaccgtggtttctatgatggccaagatgttgctggtaa |
159 |
Q |
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| T |
35189505 |
cgtggcactttcggtactgttcaccgtggtttctatgatggccaagatgttgctggtaa |
35189563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 261
Target Start/End: Original strand, 35189624 - 35189659
Alignment:
| Q |
226 |
acactcactcctcaaaccgactaaaccgccaaattc |
261 |
Q |
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| T |
35189624 |
acactcactcctcaaaccgactaaaccgccaaattc |
35189659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 56 - 157
Target Start/End: Original strand, 43970824 - 43970925
Alignment:
| Q |
56 |
tgggaaattgatccttctaacctcatcatcaagagtgtcttagctcgtggcactttcggtactgttcaccgtggtttctatgatggccaagatgttgctg |
155 |
Q |
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|||||||||||||||||||| ||||||||||| ||||| | |||||||||||||| || |||||||| |||||| | |||||| ||||||||||||| |
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| T |
43970824 |
tgggaaattgatccttctaaactcatcatcaaaagtgttattgctcgtggcacttttggcactgttcatcgtggtgtttatgatactcaagatgttgctg |
43970923 |
T |
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| Q |
156 |
gt |
157 |
Q |
| |
|
|| |
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| T |
43970924 |
gt |
43970925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 51 - 158
Target Start/End: Original strand, 1663755 - 1663862
Alignment:
| Q |
51 |
aagagtgggaaattgatccttctaacctcatcatcaagagtgtcttagctcgtggcactttcggtactgttcaccgtggtttctatgatggccaagatgt |
150 |
Q |
| |
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|||| ||||| |||||||||||||| || || ||||| | |||| | |||||||| ||||| ||||||||||| |||||| | ||||||||| |||||| |
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| T |
1663755 |
aagaatgggagattgatccttctaaacttattatcaaaactgtcattgctcgtggtacttttggtactgttcatcgtggtgtttatgatggcatagatgt |
1663854 |
T |
|
| Q |
151 |
tgctggta |
158 |
Q |
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|||||||| |
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| T |
1663855 |
tgctggta |
1663862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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