View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0765_low_11 (Length: 343)

Name: NF0765_low_11
Description: NF0765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0765_low_11
NF0765_low_11
[»] chr8 (3 HSPs)
chr8 (3-322)||(26972733-26973052)
chr8 (3-322)||(14759188-14759507)
chr8 (8-120)||(23133137-23133249)
[»] chr4 (3 HSPs)
chr4 (3-260)||(54477958-54478208)
chr4 (8-81)||(46785030-46785103)
chr4 (14-93)||(14307291-14307370)
[»] scaffold0036 (1 HSPs)
scaffold0036 (47-321)||(68137-68411)
[»] chr2 (9 HSPs)
chr2 (8-124)||(16321925-16322041)
chr2 (3-79)||(26790842-26790918)
chr2 (3-84)||(19264932-19265013)
chr2 (8-120)||(14654232-14654344)
chr2 (3-84)||(40327694-40327775)
chr2 (5-63)||(177030-177088)
chr2 (3-81)||(39012049-39012127)
chr2 (3-84)||(35135769-35135850)
chr2 (8-84)||(42403772-42403848)
[»] scaffold0214 (1 HSPs)
scaffold0214 (3-81)||(8486-8564)
[»] chr7 (3 HSPs)
chr7 (3-114)||(16770514-16770625)
chr7 (5-117)||(23208421-23208533)
chr7 (3-81)||(1579712-1579790)
[»] chr3 (7 HSPs)
chr3 (11-120)||(26433253-26433362)
chr3 (3-81)||(17718908-17718986)
chr3 (3-81)||(19020137-19020215)
chr3 (3-81)||(3660165-3660243)
chr3 (3-117)||(38647732-38647846)
chr3 (8-120)||(11896631-11896743)
chr3 (4-81)||(24730901-24730978)
[»] chr1 (4 HSPs)
chr1 (8-120)||(20284332-20284444)
chr1 (3-116)||(43297845-43297958)
chr1 (3-95)||(5193604-5193696)
chr1 (3-117)||(1524453-1524567)
[»] chr5 (5 HSPs)
chr5 (3-81)||(23944537-23944615)
chr5 (3-63)||(23621171-23621231)
chr5 (3-72)||(6641566-6641635)
chr5 (8-124)||(7813303-7813419)
chr5 (217-321)||(7813106-7813210)
[»] chr6 (2 HSPs)
chr6 (3-81)||(24894389-24894467)
chr6 (3-117)||(35232972-35233086)


Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 3 - 322
Target Start/End: Complemental strand, 26973052 - 26972733
Alignment:
Q  3 catctccaacaatatgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttcatagaattaagagcagtaaagac 102  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26973052 catctccaactatatgccagtattgtttaaaaaagatgcagtgaaagccatcggggccaggggctttgtagggcttcatagaattaagagcagtaaagac 26972953  T
Q  103 ctcttttttggtgattggagagagtaaagagagcttcccatcgtcatctatggtagggtggatgccttcattgaaacttctgtcatggttaggttcgata 202  Q
    |||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26972952 ctctcttttggtgattggagagagtaaagagagcttccaatcttcatctatggtagggtggatgccttcattgaaacttctgtcatggttaggttcgata 26972853  T
Q  203 ccactgaagaaagctttaaaataattttgtgcttcttcttggagggtgtcactatcattcgaccatgtaccacaagggagttgcagcctatggatccgat 302  Q
    ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||| ||||||||||||||||    
T  26972852 ccactgaagaaagctttgaaataattttgtgcttcttcttggagagtgtcactatcatatgaccatgtaccacaagggagttgaagcctatggatccgat 26972753  T
Q  303 ttttctttcttctgatgatg 322  Q
    ||||||||||||||||||||    
T  26972752 ttttctttcttctgatgatg 26972733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 3 - 322
Target Start/End: Complemental strand, 14759507 - 14759188
Alignment:
Q  3 catctccaacaatatgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttcatagaattaagagcagtaaagac 102  Q
    |||||||||| ||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14759507 catctccaactatatgccaggattgtttaaaaaagatgtagtgaaagccatcggggccaggggctttgtagggcttcatagaattaagagcagtaaagac 14759408  T
Q  103 ctcttttttggtgattggagagagtaaagagagcttcccatcgtcatctatggtagggtggatgccttcattgaaacttctgtcatggttaggttcgata 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  14759407 ctcttttttggtgattggagagagtaaagagagcttcccatcgtcatctatggtagggtggatgccttcattgaaatttctgtcatggttaggttcgata 14759308  T
Q  203 ccactgaagaaagctttaaaataattttgtgcttcttcttggagggtgtcactatcattcgaccatgtaccacaagggagttgcagcctatggatccgat 302  Q
    ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||| |||||    
T  14759307 ccactgaagaaagctttgaaataattttgtgcttcttcttggagagtgtcactatcatatgaccatgtaccacaagggagttgcagcctatggacccgat 14759208  T
Q  303 ttttctttcttctgatgatg 322  Q
    ||||||||||||| ||||||    
T  14759207 ttttctttcttctaatgatg 14759188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 23133137 - 23133249
Alignment:
Q  8 ccaacaatatgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttcatagaattaagagcagtaaagacctctt 107  Q
    |||||||| |||||||| || || || |||||||| || |||||||| || ||||||||||||||||| ||||| || ||||| |||| | | || || |    
T  23133137 ccaacaatgtgccagtactgcttgaagaagatgcaatggaaaccatccggaccaggggctttgtagggtttcatggagttaagggcagcataaacttcat 23133236  T
Q  108 ttttggtgattgg 120  Q
    |||||||||||||    
T  23133237 ttttggtgattgg 23133249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 3 - 260
Target Start/End: Original strand, 54477958 - 54478208
Alignment:
Q  3 catctccaacaatatgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttcatagaattaagagcagtaaagac 102  Q
    |||| |||||||| ||||| |||||||| || |||||| |||| || ||||| ||||| | |||||| |||||||||||||| ||||| | || ||| ||    
T  54477958 catcaccaacaatgtgccaatattgtttgaagaagatgtagtggaagccatctgggcctgaggctttatagggcttcatagagttaagggaagcaaacac 54478057  T
Q  103 ctcttttttggtgattggagagagtaaagagagcttcccatcgtcatctatggtagggtggatgccttcattgaaacttctgtcatggttaggttcgata 202  Q
    |||||||||||||||||| |||  |||||| ||||| || |||       ||  |||||| || ||  ||||||| |||| ||||||||| |||| | |     
T  54478058 ctcttttttggtgattggggaggttaaagaaagcttaccctcg-------tgtaagggtgaataccaacattgaagcttcggtcatggtttggttggttg 54478150  T
Q  203 ccactgaagaaagctttaaaataattttgtgcttcttcttggagggtgtcactatcat 260  Q
    |||| ||||||||  || ||||||||||| |||||||||||||| |||||||||||||    
T  54478151 ccaccgaagaaagtcttgaaataattttgagcttcttcttggagagtgtcactatcat 54478208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 46785030 - 46785103
Alignment:
Q  8 ccaacaatatgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttcat 81  Q
    |||||||| |||||||||||||| || |||||||| || |||||||| || ||||| | ||||||||| |||||    
T  46785030 ccaacaatgtgccagtattgtttgaagaagatgcattggaaaccatccggaccaggagatttgtagggtttcat 46785103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 14307370 - 14307291
Alignment:
Q  14 atatgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttcatagaattaagagc 93  Q
    |||||||| |||||||| || || ||||| ||||||||||| ||||||| || |||||| || |||||||| || |||||    
T  14307370 atatgccaatattgtttgaagaaaatgcattgaaaaccatctgggccagaggatttgtaaggtttcatagagttcagagc 14307291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 47 - 321
Target Start/End: Complemental strand, 68411 - 68137
Alignment:
Q  47 aaaccatcggggccaggggctttgtagggcttcatagaattaagagcagtaaagacctcttttttggtgattggagagagtaaagagagcttcccatcgt 146  Q
    ||||||| ||||||||||||||||| |||||| ||||  ||||| ||||  || || ||   |||||||||||||||   |||||| |  |||||||||     
T  68411 aaaccattggggccaggggctttgttgggctttatagggttaagggcagcgaacacttcaggtttggtgattggagaagttaaagaaattttcccatcgg 68312  T
Q  147 catctatggtagggtggatgccttcattgaaacttctgtcatggttaggttcgataccactgaagaaagctttaaaataattttgtgcttcttcttggag 246  Q
    |||| |||| ||||||   |||||||||||||  ||  ||||||||||||| | | ||||||||||||   || ||||| ||||| || || ||||| ||    
T  68311 catcaatggaagggtgagcgccttcattgaaagatcgatcatggttaggttggttgccactgaagaaattcttgaaatagttttgggcctcctcttgaag 68212  T
Q  247 ggtgtcactatcattcgaccatgtaccacaagggagttgcagcctatggatccgatttttctttcttctgatgat 321  Q
      |||| ||||||   ||||| ||||||||||||||||| || |||||||| | |||| | ||||||||||||||    
T  68211 aatgtcgctatcagaggaccaagtaccacaagggagttgaagtctatggattctatttctttttcttctgatgat 68137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 124
Target Start/End: Complemental strand, 16322041 - 16321925
Alignment:
Q  8 ccaacaatatgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttcatagaattaagagcagtaaagacctctt 107  Q
    |||||||| ||||||||||||||||| || ||||| ||||| |||||||| ||||| ||||||||||| ||||| || || || |||| ||| |||||||    
T  16322041 ccaacaatgtgccagtattgtttaaagaaaatgcaatgaaagccatcgggaccaggtgctttgtagggtttcatggagttgagggcagcaaaaacctctt 16321942  T
Q  108 ttttggtgattggagag 124  Q
    ||||||| || ||||||    
T  16321941 ttttggtaataggagag 16321925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 3 - 79
Target Start/End: Complemental strand, 26790918 - 26790842
Alignment:
Q  3 catctccaacaatatgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttc 79  Q
    |||| |||||||| ||| | |||||||||||||| || || ||||||||||||||||||||||||||||||||||||    
T  26790918 catcaccaacaatgtgcgaatattgtttaaaaaaaatacaatgaaaaccatcggggccaggggctttgtagggcttc 26790842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 19265013 - 19264932
Alignment:
Q  3 catctccaacaatatgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttcataga 84  Q
    ||||||| ||||| |||||||||||||| || || ||||| ||||| ||||| || |||||||||||||| |||||||||||    
T  19265013 catctccgacaatgtgccagtattgtttgaagaaaatgcaatgaaacccatcaggaccaggggctttgtatggcttcataga 19264932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 14654232 - 14654344
Alignment:
Q  8 ccaacaatatgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttcatagaattaagagcagtaaagacctctt 107  Q
    |||| ||||||| |||| || || || |||||||| || |||||||| || ||||||||||||||||||||||| || ||||| |||| | | || || |    
T  14654232 ccaataatatgctagtactgcttgaagaagatgcaatggaaaccatctggaccaggggctttgtagggcttcatggagttaagggcagcataaacttcat 14654331  T
Q  108 ttttggtgattgg 120  Q
    |||||||||||||    
T  14654332 ttttggtgattgg 14654344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 40327775 - 40327694
Alignment:
Q  3 catctccaacaatatgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttcataga 84  Q
    ||||||| ||||| |||||||||||||| || || ||||| ||||| || || || |||||||||||||| |||||||||||    
T  40327775 catctccgacaatgtgccagtattgtttgaagaaaatgcaatgaaacccgtcaggaccaggggctttgtaaggcttcataga 40327694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 177088 - 177030
Alignment:
Q  5 tctccaacaatatgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccagg 63  Q
    |||| |||||| ||||| |||||||| ||||||||||| ||||||||||| ||||||||    
T  177088 tctctaacaatgtgccaatattgtttgaaaaagatgcattgaaaaccatctgggccagg 177030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 39012127 - 39012049
Alignment:
Q  3 catctccaacaatatgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttcat 81  Q
    ||||||||| ||| ||||| ||||| |||||||| ||||| || || ||||| || ||||||||||||||||| |||||    
T  39012127 catctccaataatgtgccaatattgcttaaaaaatatgcattggaagccatctggtccaggggctttgtagggtttcat 39012049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 35135769 - 35135850
Alignment:
Q  3 catctccaacaatatgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttcataga 84  Q
    ||||||| ||||| ||||||||||| || || || ||||| ||||| || || || |||||||||||||| |||||||||||    
T  35135769 catctccgacaatgtgccagtattgcttgaagaaaatgcaatgaaacccgtcaggaccaggggctttgtatggcttcataga 35135850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 42403772 - 42403848
Alignment:
Q  8 ccaacaatatgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttcataga 84  Q
    |||||||| ||||| |||||||| || |||||||| || |||||||| || ||||| || ||||| |||||||||||    
T  42403772 ccaacaatgtgccaatattgtttgaagaagatgcaatggaaaccatcaggaccaggtgccttgtaaggcttcataga 42403848  T

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Target: scaffold0214 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 8564 - 8486
Alignment:
Q  3 catctccaacaatatgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttcat 81  Q
    ||||||||||||| |||||  |||||||||| || || || ||||||||||| ||||||||||||||||||||||||||    
T  8564 catctccaacaatgtgccaaaattgtttaaagaaaatacaatgaaaaccatcagggccaggggctttgtagggcttcat 8486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 16770514 - 16770625
Alignment:
Q  3 catctccaacaatatgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttcatagaattaagagcagtaaagac 102  Q
    ||||||||| ||| |||||||||||||| ||||| ||||| || |||||||| || || || |||||||| || |||||||| ||||| |||| || |||    
T  16770514 catctccaataatgtgccagtattgtttgaaaaaaatgcattggaaaccatccggacctggtgctttgtaaggtttcatagagttaagggcagcaaggac 16770613  T
Q  103 ctcttttttggt 114  Q
     |||||||||||    
T  16770614 ttcttttttggt 16770625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 117
Target Start/End: Original strand, 23208421 - 23208533
Alignment:
Q  5 tctccaacaatatgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttcatagaattaagagcagtaaagacct 104  Q
    |||||||| |||||||| |||||||| || ||||| || || || || || ||||||||||||||||| || ||||| ||||| || |||  ||| || |    
T  23208421 tctccaactatatgccaatattgtttgaagaagatacaatggaagccgtccgggccaggggctttgtatggtttcatggaattgagggcaacaaaaactt 23208520  T
Q  105 cttttttggtgat 117  Q
    | |||||||||||    
T  23208521 catttttggtgat 23208533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 1579712 - 1579790
Alignment:
Q  3 catctccaacaatatgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttcat 81  Q
    ||||||||||||| ||||| |||| |||||| ||||| || |||||  |||| |  ||||||||||||||||| |||||    
T  1579712 catctccaacaatgtgccaatattttttaaagaagatacattgaaactcatccgaaccaggggctttgtagggtttcat 1579790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 26433253 - 26433362
Alignment:
Q  11 acaatatgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttcatagaattaagagcagtaaagacctcttttt 110  Q
    |||||||||||||| ||||| || |||||||| || |||||||| || |||||||||||||| |||||||| || ||||| |||| | | || || ||||    
T  26433253 acaatatgccagtactgtttgaagaagatgcaatggaaaccatcaggaccaggggctttgtaaggcttcatggagttaagggcagcataaacttcatttt 26433352  T
Q  111 tggtgattgg 120  Q
    | ||||||||    
T  26433353 tagtgattgg 26433362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 17718908 - 17718986
Alignment:
Q  3 catctccaacaatatgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttcat 81  Q
    |||||||||| || |||||||| ||||| |||||||| || ||||||||||| || || ||||||||||| ||||||||    
T  17718908 catctccaactatgtgccagtactgtttgaaaaagatacattgaaaaccatctggaccgggggctttgtacggcttcat 17718986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 19020137 - 19020215
Alignment:
Q  3 catctccaacaatatgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttcat 81  Q
    |||||||||| || |||||||| ||||| |||||||| || ||||||||||| || || ||||||||||| ||||||||    
T  19020137 catctccaactatgtgccagtactgtttgaaaaagatacattgaaaaccatctggaccgggggctttgtacggcttcat 19020215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 3660165 - 3660243
Alignment:
Q  3 catctccaacaatatgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttcat 81  Q
    ||||||||| ||| ||||| ||||| |||||||| ||||| || || ||||| || ||||||||||||||||| |||||    
T  3660165 catctccaataatgtgccaatattgcttaaaaaatatgcattggaagccatctggtccaggggctttgtagggtttcat 3660243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 117
Target Start/End: Original strand, 38647732 - 38647846
Alignment:
Q  3 catctccaacaatatgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttcatagaattaagagcagtaaagac 102  Q
    ||||||| || || ||||| |||||||| || ||||| || || |||||||| ||||| || |||||||| || ||||| || ||||| |||| ||| ||    
T  38647732 catctccgactatgtgccaatattgtttgaagaagatacaatggaaaccatctgggccgggtgctttgtaaggtttcatggagttaagtgcagcaaacac 38647831  T
Q  103 ctcttttttggtgat 117  Q
    ||| |||||||||||    
T  38647832 ctcatttttggtgat 38647846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 120
Target Start/End: Complemental strand, 11896743 - 11896631
Alignment:
Q  8 ccaacaatatgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttcatagaattaagagcagtaaagacctctt 107  Q
    |||||||| || ||||| || || || |||||||| || |||||||| || ||||||||||||||||| ||||| || ||||| |||  | | || || |    
T  11896743 ccaacaatgtgtcagtactgcttgaagaagatgcaatggaaaccatccggaccaggggctttgtagggtttcatggagttaagggcaacataaacttcat 11896644  T
Q  108 ttttggtgattgg 120  Q
    |||||||||||||    
T  11896643 ttttggtgattgg 11896631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 24730978 - 24730901
Alignment:
Q  4 atctccaacaatatgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttcat 81  Q
    |||||||||||| ||||| |||||||||||||| ||||| || || ||||  || || ||||||||||| || |||||    
T  24730978 atctccaacaatgtgccaatattgtttaaaaaatatgcattggaagccatatggacccggggctttgtaaggtttcat 24730901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 120
Target Start/End: Complemental strand, 20284444 - 20284332
Alignment:
Q  8 ccaacaatatgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttcatagaattaagagcagtaaagacctctt 107  Q
    |||||||| |||||||| || || || |||||||| || |||||||| || ||||||||||||||||| ||||| || ||||| |||| | | || || |    
T  20284444 ccaacaatgtgccagtactgcttgaagaagatgcaatggaaaccatccggaccaggggctttgtagggtttcatggagttaagggcagcataaacttcat 20284345  T
Q  108 ttttggtgattgg 120  Q
    |||||||||||||    
T  20284344 ttttggtgattgg 20284332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 116
Target Start/End: Complemental strand, 43297958 - 43297845
Alignment:
Q  3 catctccaacaatatgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttcatagaattaagagcagtaaagac 102  Q
    |||||||||| || ||||| |||||||| || |||||||| || || ||||| ||| | || ||||||||||| ||||| || ||||| || ||||| ||    
T  43297958 catctccaactatgtgccaatattgtttgaagaagatgcaatggaagccatcagggtcgggtgctttgtagggtttcatggagttaagggcggtaaacac 43297859  T
Q  103 ctcttttttggtga 116  Q
     || ||||||||||    
T  43297858 atcatttttggtga 43297845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 95
Target Start/End: Original strand, 5193604 - 5193696
Alignment:
Q  3 catctccaacaatatgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttcatagaattaagagcag 95  Q
    |||||||||| || ||||| ||||||||||| |||||||| || ||  |||||||| | || |||||||| || ||||| |||||||| ||||    
T  5193604 catctccaactatgtgccaatattgtttaaagaagatgcaatggaagtcatcggggtcgggtgctttgtatggtttcatggaattaagggcag 5193696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 117
Target Start/End: Complemental strand, 1524567 - 1524453
Alignment:
Q  3 catctccaacaatatgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttcatagaattaagagcagtaaagac 102  Q
    |||||||||| |||||||||||||  || || |||||||| ||||||||||| ||| | || |||||||| || || || || ||||| ||| | |||||    
T  1524567 catctccaactatatgccagtatttcttgaagaagatgcattgaaaaccatcagggtcgggtgctttgtaaggttttatggagttaagggcattgaagac 1524468  T
Q  103 ctcttttttggtgat 117  Q
     ||  ||||||||||    
T  1524467 ttcggttttggtgat 1524453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 23944615 - 23944537
Alignment:
Q  3 catctccaacaatatgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttcat 81  Q
    ||||||||||||| || |||||||| || || ||||| || ||||||||||| ||||||||||||||| |||| |||||    
T  23944615 catctccaacaatgtgtcagtattgcttgaagaagatacattgaaaaccatctgggccaggggctttgaagggtttcat 23944537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 23621171 - 23621231
Alignment:
Q  3 catctccaacaatatgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccagg 63  Q
    |||| |||||||||||||| |||||||||||||||||||| || || ||||| ||||||||    
T  23621171 catcaccaacaatatgccaatattgtttaaaaaagatgcaatggaagccatctgggccagg 23621231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 6641566 - 6641635
Alignment:
Q  3 catctccaacaatatgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgta 72  Q
    |||| |||||| | |||||||||||| | || ||  |||||||||||||||| |||||||||||||||||    
T  6641566 catcaccaacattgtgccagtattgtatgaagaaattgcagtgaaaaccatcagggccaggggctttgta 6641635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 124
Target Start/End: Complemental strand, 7813419 - 7813303
Alignment:
Q  8 ccaacaatatgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttcatagaattaagagcagtaaagacctctt 107  Q
    ||||||||||||||||| ||||| || ||||| || || ||||| || || || ||||||||||| || |||||||| || || | || ||| || || |    
T  7813419 ccaacaatatgccagtactgtttgaagaagatacaatggaaaccgtcaggtcctggggctttgtaaggtttcatagacttgagggtagcaaaaacttcat 7813320  T
Q  108 ttttggtgattggagag 124  Q
    |||||||||| ||||||    
T  7813319 ttttggtgatgggagag 7813303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 321
Target Start/End: Complemental strand, 7813210 - 7813106
Alignment:
Q  217 tttaaaataattttgtgcttcttcttggagggtgtcactatcattcgaccatgtaccacaagggagttgcagcctatggatccgatttttctttcttctg 316  Q
    ||||||||||||||| || ||||||||||| ||||| |||||    | ||| |||||||||||||| || ||||  ||||| | |||| |||| |||||     
T  7813210 tttaaaataattttgggcctcttcttggagtgtgtcgctatctgaggtccaagtaccacaagggagctgaagccggtggattctatttctcttccttcta 7813111  T
Q  317 atgat 321  Q
    |||||    
T  7813110 atgat 7813106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 24894389 - 24894467
Alignment:
Q  3 catctccaacaatatgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttcat 81  Q
    |||||||||| |||||||| |||||||| |||||||| || || || ||||| | ||||||||||||||| || |||||    
T  24894389 catctccaactatatgccaatattgtttgaaaaagatacaatggaatccatccgagccaggggctttgtatggtttcat 24894467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 117
Target Start/End: Complemental strand, 35233086 - 35232972
Alignment:
Q  3 catctccaacaatatgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttcatagaattaagagcagtaaagac 102  Q
    ||||||||| ||||||||| ||||| || || || ||||| || |||||||| || || || ||||||||||| ||||| || || || |||| ||||||    
T  35233086 catctccaataatatgccaatattgcttgaagaatatgcaatggaaaccatctggtcctggagctttgtagggtttcatggagtttagggcagcaaagac 35232987  T
Q  103 ctcttttttggtgat 117  Q
     || ||||| |||||    
T  35232986 ttcatttttagtgat 35232972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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