View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0765_low_25 (Length: 273)
Name: NF0765_low_25
Description: NF0765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0765_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 99 - 262
Target Start/End: Complemental strand, 49697375 - 49697212
Alignment:
| Q |
99 |
ttgcttctccaataactcaattcttcgagcttccctcgccattaacttaatttcctcaattctcttttccaaaaattgatcctccacagttttcccattc |
198 |
Q |
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| T |
49697375 |
ttgcttctccaataactcaattcttcgagcttccctcgccattaacttaatttcctcaattctcttttccaaaacttgatcctccacagttttcccattc |
49697276 |
T |
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| Q |
199 |
ccatcaaacaaaatgttcctcttttccctttcacccacttccaaatccccattggaatgttcat |
262 |
Q |
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| T |
49697275 |
ccatcaaacaaaatgttcctcttttccctttcacccacttccaaatccccattggaatgttcat |
49697212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 7 - 101
Target Start/End: Complemental strand, 49697966 - 49697872
Alignment:
| Q |
7 |
caattgacaataactaataagagttcaaataaatagaagttatgcattgatcacattaccattgtttatgctcttgggcgtaactccatcctttg |
101 |
Q |
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| T |
49697966 |
caattgacaataactaataagagttcaaataaatagaagttatgcattgatcacattaccattgtttatgctcttgggtgtaactccatcctttg |
49697872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 150
Target Start/End: Original strand, 42245108 - 42245144
Alignment:
| Q |
114 |
ctcaattcttcgagcttccctcgccattaacttaatt |
150 |
Q |
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| T |
42245108 |
ctcaattcttcgagcttccctcaccattaacttaatt |
42245144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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