View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0765_low_27 (Length: 262)
Name: NF0765_low_27
Description: NF0765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0765_low_27 |
 | |
|
| [»] scaffold0048 (3 HSPs) |
| | |
|
| [»] scaffold0246 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 11 - 171
Target Start/End: Complemental strand, 9492306 - 9492146
Alignment:
| Q |
11 |
cagagatggtggtcggaccctttagtttgcttaggtcttgactgatgttgtatcttgtatatactttgtaagacggtttgtcttttggggtggtctcttt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9492306 |
cagagatggtggtcggaccctttagtttgtttgagtcttgactaatgttgtatcttgtatatactttgtaagacggtttgtcttttggggtggtctcttt |
9492207 |
T |
|
| Q |
111 |
ggtacatcttgtactagggagttctcttcgccattcttaatatatcccattttgaattctt |
171 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9492206 |
ggtacatcttgtactagggagttctcttcgccattcttaatatatcccattttgaattctt |
9492146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048 (Bit Score: 109; Significance: 6e-55; HSPs: 3)
Name: scaffold0048
Description:
Target: scaffold0048; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 11 - 171
Target Start/End: Original strand, 64262 - 64422
Alignment:
| Q |
11 |
cagagatggtggtcggaccctttagtttgcttaggtcttgactgatgttgtatcttgtatatactttgtaagacggtttgtcttttggggtggtctcttt |
110 |
Q |
| |
|
|||||||| |||||||| |||||| |||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
64262 |
cagagatgatggtcggatcctttactttgtttgggtcttgactgatgttgtatcttgtaaatactttgtaagacggtttgtcttttgaggtggtctcttt |
64361 |
T |
|
| Q |
111 |
ggtacatcttgtactagggagttctcttcgccattcttaatatatcccattttgaattctt |
171 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||| |||||||| ||||||||| ||||| |
|
|
| T |
64362 |
ggtacatcttgtactagggaattctcatcgccattattaatataatccattttgatttctt |
64422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 50967 - 51050
Alignment:
| Q |
11 |
cagagatggtggtcggaccctttagtttgcttaggtcttgactgatgttgtatcttgtatatactttgtaagacggtttgtctt |
94 |
Q |
| |
|
||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
50967 |
cagagatggtggtcggatcctttacattgcttgggtcttgactgatgttgtatcttgtaaatactttgtaagacggtttgtctt |
51050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 171
Target Start/End: Original strand, 51047 - 51101
Alignment:
| Q |
117 |
tcttgtactagggagttctcttcgccattcttaatatatcccattttgaattctt |
171 |
Q |
| |
|
|||| ||||||||||||||| |||||||| |||||||| ||||||||| ||||| |
|
|
| T |
51047 |
tcttatactagggagttctcatcgccattattaatataatccattttgatttctt |
51101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 6e-43; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 11 - 171
Target Start/End: Complemental strand, 42272566 - 42272406
Alignment:
| Q |
11 |
cagagatggtggtcggaccctttagtttgcttaggtcttgactgatgttgtatcttgtatatactttgtaagacggtttgtcttttggggtggtctcttt |
110 |
Q |
| |
|
|||||||||||||||||||| ||||| || || |||||||| |||| || || |||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
42272566 |
cagagatggtggtcggaccccttagtatgtttgggtcttgattgatctttcattttgtatatactttgtatgacgctttgtcttttggggtggtctcttt |
42272467 |
T |
|
| Q |
111 |
ggtacatcttgtactagggagttctcttcgccattcttaatatatcccattttgaattctt |
171 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||| ||||||||| |||||||| ||||| |
|
|
| T |
42272466 |
ggtacatcttgtactagggagctctcaccgccattgttaatatatttcattttgatttctt |
42272406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 11 - 171
Target Start/End: Complemental strand, 40483790 - 40483631
Alignment:
| Q |
11 |
cagagatggtggtcggaccctttagtttgcttaggtcttgactgatgttgt-atcttgtatatactttgtaagacggtttgtcttttggggtggtctctt |
109 |
Q |
| |
|
|||||||||||||||||||| ||| | || || |||||||||||| || | |||||||| |||||||||||||||| |||||||||||||||| ||| |
|
|
| T |
40483790 |
cagagatggtggtcggaccccttattgtgtttgggtcttgactgacattattatcttgtaaatactttgtaagacgggttgtcttttggggtgg-ctccg |
40483692 |
T |
|
| Q |
110 |
tggtacatcttgtactagggagttctcttcgccattcttaatatatcccattttgaattctt |
171 |
Q |
| |
|
| ||||| |||||||||| ||||| || |||||||| |||||||||| |||||||| ||||| |
|
|
| T |
40483691 |
tagtacaacttgtactagagagtt-tcatcgccattgttaatatatcacattttgatttctt |
40483631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 171
Target Start/End: Complemental strand, 55899890 - 55899828
Alignment:
| Q |
109 |
ttggtacatcttgtactagggagttctcttcgccattcttaatatatcccattttgaattctt |
171 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||| |||||||||||| |||||| ||||| |
|
|
| T |
55899890 |
ttggtacatcttgtactagggagctctcaccgccattgttaatatatcccgttttgatttctt |
55899828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 11 - 171
Target Start/End: Complemental strand, 8384435 - 8384275
Alignment:
| Q |
11 |
cagagatggtggtcggaccctttagtttgcttaggtcttgactgatgttgt-atcttgtatatactttgtaagacggtttgtcttttggggtggtctctt |
109 |
Q |
| |
|
|||||||||||||||||||||| | | || |||||||||||||||| || | |||||||||||||||||||||| ||||||||||| ||||| |||||| |
|
|
| T |
8384435 |
cagagatggtggtcggaccctt-attatgtttaggtcttgactgatctttttatcttgtatatactttgtaagatggtttgtctttaagggtgatctctt |
8384337 |
T |
|
| Q |
110 |
tggtacatcttgtactagggagttctcttcgccattcttaatatatcccattttgaattctt |
171 |
Q |
| |
|
||||||||||| |||||||||| || | |||||||| ||||||||||||||||||| ||||| |
|
|
| T |
8384336 |
tggtacatcttatactagggagctcgcatcgccattgttaatatatcccattttgatttctt |
8384275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 171
Target Start/End: Original strand, 19015187 - 19015343
Alignment:
| Q |
14 |
agatggtggtcggaccctttagtttgcttaggtcttgactgatgttgtatcttgtatatactttgtaagacggtttgtcttttggggtggtctctttggt |
113 |
Q |
| |
|
|||||||||||| |||| ||| | || || ||||| ||||||| || | | |||||||||||||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
19015187 |
agatggtggtcgaaccccttaatatgtttgggtctagactgatctttt-tattgtatatactttgtaagacggtttgtcttttggagtggtctctttgat |
19015285 |
T |
|
| Q |
114 |
acatcttgtactagggagttctcttcgccattcttaatatatcccattttgaattctt |
171 |
Q |
| |
|
|||||||||||||||||| |||| ||||||| |||||||||| |||||||| ||||| |
|
|
| T |
19015286 |
acatcttgtactagggagctctcaccgccattattaatatatctcattttgatttctt |
19015343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 110
Target Start/End: Complemental strand, 36379681 - 36379581
Alignment:
| Q |
11 |
cagagatggtggtcggaccctttagtttgcttaggtcttgactgatgttgt-atcttgtatatactttgtaagacggtttgtcttttggggtggtctctt |
109 |
Q |
| |
|
||||||||||||||||| | ||| | | || ||||||||||||| || | ||||||| |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
36379681 |
cagagatggtggtcggatctcttattgtatttgggtcttgactgatctttttatcttgtgtatactttgtaagacggtttgtcttttggggtggcctctt |
36379582 |
T |
|
| Q |
110 |
t |
110 |
Q |
| |
|
| |
|
|
| T |
36379581 |
t |
36379581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 171
Target Start/End: Complemental strand, 4939321 - 4939212
Alignment:
| Q |
61 |
tatcttgtatatactttgtaagacggtttgtcttttggggtggtctctttggtacatcttgtactagggagttctcttcgccattcttaatatatcccat |
160 |
Q |
| |
|
|||||| || |||||||||||||| | ||| |||||||| ||| |||| | |||| |||||||||||||| |||| |||||||| |||||||||| ||| |
|
|
| T |
4939321 |
tatcttatacatactttgtaagacagcttg-cttttgggatggcctctctaatacaacttgtactagggagctctcatcgccattgttaatatatctcat |
4939223 |
T |
|
| Q |
161 |
tttgaattctt |
171 |
Q |
| |
|
||||| ||||| |
|
|
| T |
4939222 |
tttgatttctt |
4939212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0246 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0246
Description:
Target: scaffold0246; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 11 - 171
Target Start/End: Complemental strand, 21729 - 21570
Alignment:
| Q |
11 |
cagagatggtggtcggaccctttagtttgcttaggtcttgactgatgttgt-atcttgtatatactttgtaagacggtttgtcttttggggtggtctctt |
109 |
Q |
| |
|
|||||||||||||||||||| ||| | || || |||||||||||| || | |||||||| |||||||||||||||| |||||||||||||||| ||| |
|
|
| T |
21729 |
cagagatggtggtcggaccccttattgtgtttgggtcttgactgacattattatcttgtaaatactttgtaagacgggttgtcttttggggtgg-ctccg |
21631 |
T |
|
| Q |
110 |
tggtacatcttgtactagggagttctcttcgccattcttaatatatcccattttgaattctt |
171 |
Q |
| |
|
| ||||| |||||||||| ||||| || |||||||| |||||||||| |||||||| ||||| |
|
|
| T |
21630 |
tagtacaacttgtactagagagtt-tcatcgccattgttaatatatcacattttgatttctt |
21570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 163
Target Start/End: Original strand, 44846290 - 44846443
Alignment:
| Q |
11 |
cagagatggtggtcggaccctttagtttgcttaggtcttgactgatgttgt-atcttgtatatactttgtaagacggtttgtcttttggggtggtctctt |
109 |
Q |
| |
|
|||||||| |||| |||||| ||| | || || |||||||||||| || | |||||||| |||||||||||||||| |||||||||||| ||| ||||| |
|
|
| T |
44846290 |
cagagatgatggttggaccccttattgtgtttgggtcttgactgaccttattatcttgtaaatactttgtaagacggattgtcttttgggatggcctctt |
44846389 |
T |
|
| Q |
110 |
tggtacatcttgtactagggagttctcttcgccattcttaatatatcccatttt |
163 |
Q |
| |
|
|| |||| ||| ||||| |||||| || ||| |||| ||||||||||||||||| |
|
|
| T |
44846390 |
tgatacaacttatactatggagttttcatcgtcattgttaatatatcccatttt |
44846443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 171
Target Start/End: Complemental strand, 15792790 - 15792633
Alignment:
| Q |
11 |
cagagatggtggtcggaccctttagtttgcttaggtcttgactgatgttgtatcttgtatatactttgtaagacggtttgtcttttggggtggtctcttt |
110 |
Q |
| |
|
||||||||||||| |||||| |||||||| || |||||||||| || | | | |||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
15792790 |
cagagatggtggttggaccccttagtttgtttgggtcttgactaatct--ttttttgtatatacactgtaagacgg-ttgtcttttggggtggtctcttt |
15792694 |
T |
|
| Q |
111 |
ggtacatcttgtactagggagttctcttcgccattcttaatatatcccattttgaattctt |
171 |
Q |
| |
|
||||||||||||||| || | |||| | |||| ||||||||| ||||||||| ||||| |
|
|
| T |
15792693 |
ggtacatcttgtactcggaaaatctcaccaccatagttaatatattccattttgagttctt |
15792633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 125
Target Start/End: Original strand, 40168164 - 40168222
Alignment:
| Q |
67 |
gtatatactttgtaagacggtttgtcttttggggtggtctctttggtacatcttgtact |
125 |
Q |
| |
|
||||||||||| || ||| ||||| |||||| ||||||| |||||||||||||||||| |
|
|
| T |
40168164 |
gtatatactttatatgacactttgttttttggagtggtctttttggtacatcttgtact |
40168222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3690 times since January 2019
Visitors: 4818