View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0765_low_4 (Length: 555)
Name: NF0765_low_4
Description: NF0765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0765_low_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 30 - 555
Target Start/End: Complemental strand, 49697966 - 49697441
Alignment:
| Q |
30 |
caattgacaataactaataagagttcaaataaatagaagttatgcattgatcacattaccattgtttatgctcttgggcgtaactccatcctttgttttc |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
49697966 |
caattgacaataactaataagagttcaaataaatagaagttatgcattgatcacattaccattgtttatgctcttgggtgtaactccatcctttgttttc |
49697867 |
T |
|
| Q |
130 |
gtattaggtgcttcaatcatttcttccaaattcttcccttcattttgaatttccccagacttgtcatcaactgttttacctctttcttccaatggaacac |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49697866 |
gtattaggtgcttcaatcatttcttccaaattcttcccttcattttgaatttccccagacttgtcatcaactgttttacctctttcttccaatggaacac |
49697767 |
T |
|
| Q |
230 |
caaaagcatttttgtctgtcacatcttgttgattcacttgcttatcgccatccaatattcctgcacgatcagtaacctgacttccataatcttggggttt |
329 |
Q |
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| T |
49697766 |
cagaagcatttttgtctgtcacatcttgttgattcacttgcttatcgccatccaatattcctgcacgatcagtaacctgacttccataatcttggggttt |
49697667 |
T |
|
| Q |
330 |
tacacttgaaaccctacgatcttgagtccctggaaatcccttcggtgttcttgtagccttagttgaagggcttttaaatttagactttttcttaaacact |
429 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
49697666 |
tacacttgaaaccctacgatcttgagtccctggaaatcccttcggtgttcttgtagccttagtcgaagggcttttaaatttagactttttcttaaacact |
49697567 |
T |
|
| Q |
430 |
aattcctctatcccctgattcacactcatatcaccatcctcatcagaatttccacgaccatttaatcgcaatgctgctgaactatccttgttactcttaa |
529 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49697566 |
aattcctctatcccctgattcacactcatatcaccatcctcatcagaatttccacgaccatttaatcgcaatgctgctgaactatccttgttactcttaa |
49697467 |
T |
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| Q |
530 |
tcctattcttcagcttcaacaaacgc |
555 |
Q |
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| T |
49697466 |
tcctattcttcagcttcaacaaacgc |
49697441 |
T |
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