View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0765_low_6 (Length: 397)

Name: NF0765_low_6
Description: NF0765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0765_low_6
NF0765_low_6
[»] chr3 (5 HSPs)
chr3 (11-370)||(50806516-50806875)
chr3 (11-370)||(50869002-50869361)
chr3 (11-370)||(44196005-44196345)
chr3 (185-370)||(48553841-48554026)
chr3 (188-218)||(26599146-26599176)
[»] chr4 (2 HSPs)
chr4 (11-58)||(33929620-33929667)
chr4 (186-218)||(31038937-31038969)
[»] chr7 (4 HSPs)
chr7 (186-262)||(39362045-39362118)
chr7 (179-218)||(39591530-39591569)
chr7 (186-218)||(30456520-30456552)
chr7 (186-218)||(35536075-35536107)
[»] chr6 (1 HSPs)
chr6 (188-239)||(2732311-2732360)
[»] chr2 (1 HSPs)
chr2 (188-220)||(33944571-33944603)


Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 11 - 370
Target Start/End: Complemental strand, 50806875 - 50806516
Alignment:
Q  11 cacagaatctatacaaccaaatcaaaaagctaacaacccattaaccttnnnnnnnnnnnnnnnnntaatctattaattcactttggttattgatggtata 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||                 |||||||||||||||||||||||||||||||||||    
T  50806875 cacagaatctatacaaccaaatcaaaaagctaacaacccattaaccttaaaaaaaaacaaaaaaataatctattaattcactttggttattgatggtata 50806776  T
Q  111 ctaagtaatttacactcacaattctttgatgcataaaacagcaggtcactggagatccaaacccaatttcaaagcaacttatatgaaaactatttgactt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50806775 ctaagtaatttacactcacaattctttgatgcataaaacagcaggtcactggagatccaaacccaatttcaaagcaacttatatgaaaactatttgactt 50806676  T
Q  211 tattttatataaaaacagcttatacataagtgcttatgctataagtgcttaagttgtttatccaaatggaacctttatggtaaaatgccaatacctgcca 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50806675 tattttatataaaaacagcttatacataagtgcttatgctataagtgcttaagttgtttatccaaatggaacctttatggtaaaatgccaatacctgcca 50806576  T
Q  311 tgatatactcaggagcagcatagccatttgttcccatcatgcatgttgttgtcacatgtg 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50806575 tgatatactcaggagcagcatagccatttgttcccatcatgcatgttgttgtcacatgtg 50806516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 11 - 370
Target Start/End: Original strand, 50869002 - 50869361
Alignment:
Q  11 cacagaatctatacaaccaaatcaaaaagctaacaacccattaaccttnnnnnnnnnnnnnnnnntaatctattaattcactttggttattgatggtata 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||                 |||||||||||||||||||||||||||||||||||    
T  50869002 cacagaatctatacaaccaaatcaaaaagctaacaacccattaaccttaaaaaaaaacaaaaaaataatctattaattcactttggttattgatggtata 50869101  T
Q  111 ctaagtaatttacactcacaattctttgatgcataaaacagcaggtcactggagatccaaacccaatttcaaagcaacttatatgaaaactatttgactt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50869102 ctaagtaatttacactcacaattctttgatgcataaaacagcaggtcactggagatccaaacccaatttcaaagcaacttatatgaaaactatttgactt 50869201  T
Q  211 tattttatataaaaacagcttatacataagtgcttatgctataagtgcttaagttgtttatccaaatggaacctttatggtaaaatgccaatacctgcca 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50869202 tattttatataaaaacagcttatacataagtgcttatgctataagtgcttaagttgtttatccaaatggaacctttatggtaaaatgccaatacctgcca 50869301  T
Q  311 tgatatactcaggagcagcatagccatttgttcccatcatgcatgttgttgtcacatgtg 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50869302 tgatatactcaggagcagcatagccatttgttcccatcatgcatgttgttgtcacatgtg 50869361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 370
Target Start/End: Original strand, 44196005 - 44196345
Alignment:
Q  11 cacagaatctatacaaccaaatcaaaaagctaacaacccattaaccttnnnnnnnnnnnnnnnnntaatctattaattcactttggttattgatggtata 110  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||                 |||||||||||||||||||||||||||||||||||    
T  44196005 cacagaatctacacaaccaaatcaaaaagctaacaacccattaaccttaaaaaaacaaaaaa---taatctattaattcactttggttattgatggtata 44196101  T
Q  111 ctaagtaatttacactcacaattctttgatgcataaaacagcaggtcactggagatccaaacccaatttcaaagcaacttatatgaaaactatttgactt 210  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44196102 ctaagtaatttacactcacaattctttgatgcataaaactgcaggtcactggagatccaaacccaatttcaaagcaacttatatgaaaactatttgactt 44196201  T
Q  211 tattttatataaaaacagcttatacataagtgcttatgctataagtgcttaagttgtttatccaaatggaacctttatggtaaaatgccaatacctgcca 310  Q
    ||||||| |||||||||||||||||||||| ||                |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44196202 tattttaaataaaaacagcttatacataagcgc----------------taagttgtttatccaaatggaacctttatggtaaaatgccaatacctgcca 44196285  T
Q  311 tgatatactcaggagcagcatagccatttgttcccatcatgcatgttgttgtcacatgtg 370  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  44196286 tgatatactcaggagcagcatagccttttgttcccattatgcatgttgttgtcacatgtg 44196345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 185 - 370
Target Start/End: Complemental strand, 48554026 - 48553841
Alignment:
Q  185 caacttatatgaaaactatttgactttattttatataaaaacagcttatacataagtgcttatgctataagtgcttaagttgtttatccaaatggaacct 284  Q
    |||||| ||||||||| || ||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||    
T  48554026 caacttttatgaaaacaatctgactttattttatataaaaatagcttatacataaacgcttatgctataagtgcttaagttgttaatccaaatggaacct 48553927  T
Q  285 ttatggtaaaatgccaatacctgccatgatatactcaggagcagcatagccatttgttcccatcatgcatgttgttgtcacatgtg 370  Q
     |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  48553926 atatggtaaaatgccaatacctgacatgatatactcaggagcagcatagccttttgttcccattatgcatgttgttgtcacatgtg 48553841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 218
Target Start/End: Complemental strand, 26599176 - 26599146
Alignment:
Q  188 cttatatgaaaactatttgactttattttat 218  Q
    |||||||||||||||||||||||||||||||    
T  26599176 cttatatgaaaactatttgactttattttat 26599146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 33929667 - 33929620
Alignment:
Q  11 cacagaatctatacaaccaaatcaaaaagctaacaacccattaacctt 58  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  33929667 cacagaatctacacaaccaaatcaaaaagctaacaacccattaacctt 33929620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 218
Target Start/End: Original strand, 31038937 - 31038969
Alignment:
Q  186 aacttatatgaaaactatttgactttattttat 218  Q
    ||||||||||||||| |||||||||||||||||    
T  31038937 aacttatatgaaaacaatttgactttattttat 31038969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 262
Target Start/End: Complemental strand, 39362118 - 39362045
Alignment:
Q  186 aacttatatgaaaactatttgactttattttatataaaaacagcttatacataagtgcttatgctataagtgcttaa 262  Q
    |||||| |||||||| ||||||||||  ||   || |||| ||||||||||||||||||||||||||||||||||||    
T  39362118 aacttacatgaaaacaatttgacttttatt---atgaaaatagcttatacataagtgcttatgctataagtgcttaa 39362045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 179 - 218
Target Start/End: Original strand, 39591530 - 39591569
Alignment:
Q  179 tcaaagcaacttatatgaaaactatttgactttattttat 218  Q
    ||||| |||||||||||||||| |||||||||||||||||    
T  39591530 tcaaaacaacttatatgaaaacaatttgactttattttat 39591569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 218
Target Start/End: Original strand, 30456520 - 30456552
Alignment:
Q  186 aacttatatgaaaactatttgactttattttat 218  Q
    ||||||||||||||| |||||||||||||||||    
T  30456520 aacttatatgaaaacaatttgactttattttat 30456552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 218
Target Start/End: Complemental strand, 35536107 - 35536075
Alignment:
Q  186 aacttatatgaaaactatttgactttattttat 218  Q
    ||||||||||||||| |||||||||||||||||    
T  35536107 aacttatatgaaaacaatttgactttattttat 35536075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 2732311 - 2732360
Alignment:
Q  188 cttatatgaaaactatttgactttattttatataaaaacagcttatacataa 239  Q
    ||||||||||||  ||||||||||||||  |||||||| |||||||||||||    
T  2732311 cttatatgaaaataatttgactttattt--tataaaaatagcttatacataa 2732360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 33944603 - 33944571
Alignment:
Q  188 cttatatgaaaactatttgactttattttatat 220  Q
    ||||||||||||| |||||||||||||||||||    
T  33944603 cttatatgaaaacaatttgactttattttatat 33944571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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