View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0765_low_8 (Length: 364)
Name: NF0765_low_8
Description: NF0765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0765_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 35189429 - 35189165
Alignment:
| Q |
1 |
agtagtagcaatagagtttgagtgatcatgagaagaatcatcatttaccttgttgaagtgtttctcaagttgttcatcaatggtttttagatcaatttga |
100 |
Q |
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| T |
35189429 |
agtagtagcaatagagtttgagtgatcatgagaagaatcatcatttaccttgttgaagtgtttctcaagttgttcatcaatggtttttagatcaatttga |
35189330 |
T |
|
| Q |
101 |
tcagctctcacaaacccatcattcatttttccacaccctatcttctgaggatgtgattgattattggtgcagcataaatagaatagaatagaatagaggg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35189329 |
tcagctctcacaaacccatcattcatttttccacaccctatcttctgagaatgtgattgattattggtgcagcataaatagaatagaa-----tagaggg |
35189235 |
T |
|
| Q |
201 |
gacattgattgtggtaaaatgtagtattatggtggatagagagagtgtttgagttgtcgtttgatgatgt |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35189234 |
gacattgattgtggtaaaatgtagtattatggtggatagagagagtgtttgagttgtcgtttgatgatgt |
35189165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 121
Target Start/End: Complemental strand, 43970669 - 43970595
Alignment:
| Q |
47 |
accttgttgaagtgtttctcaagttgttcatcaatggtttttagatcaatttgatcagctctcacaaacccatca |
121 |
Q |
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|||||||||| ||| | ||||| |||||||| ||| |||| |||||||| ||||| ||||| |||||||||||| |
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| T |
43970669 |
accttgttgagatgtctttcaagctgttcatcgatgcttttcagatcaatctgatctgctcttacaaacccatca |
43970595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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