View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0766_high_10 (Length: 423)

Name: NF0766_high_10
Description: NF0766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0766_high_10
NF0766_high_10
[»] chr5 (3 HSPs)
chr5 (30-268)||(6796269-6796507)
chr5 (326-368)||(16594401-16594443)
chr5 (326-368)||(41173256-41173298)
[»] chr3 (6 HSPs)
chr3 (320-367)||(31425532-31425579)
chr3 (322-369)||(37143121-37143168)
chr3 (322-368)||(15927620-15927666)
chr3 (322-367)||(31931045-31931090)
chr3 (326-368)||(49875800-49875842)
chr3 (322-359)||(31664624-31664661)
[»] chr1 (4 HSPs)
chr1 (322-369)||(18982519-18982566)
chr1 (322-362)||(36775072-36775112)
chr1 (322-368)||(46859418-46859464)
chr1 (328-369)||(36775112-36775153)
[»] chr6 (3 HSPs)
chr6 (324-368)||(28982664-28982708)
chr6 (321-368)||(17181961-17182008)
chr6 (322-368)||(354276-354322)
[»] chr7 (2 HSPs)
chr7 (322-369)||(48814832-48814879)
chr7 (325-369)||(2819256-2819300)
[»] chr8 (1 HSPs)
chr8 (323-369)||(21514961-21515007)


Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 30 - 268
Target Start/End: Original strand, 6796269 - 6796507
Alignment:
Q  30 gatttgattactaataacaatgtgattctcaatcttgtcaacaagctagatgagccatttctactaacatggtgaggttttatttatgnnnnnnngattc 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||    
T  6796269 gatttgattactaataacaatgtgattctcaatcttgtcaacaagctagatgagccatttctactaacatggtgaggttttatttatgtttttttgattc 6796368  T
Q  130 aatttctttgctttatgatctgcattgagtacctttatgtgtgtaaatcattgttttcaaaattggccagtttgtcagctggtttgatcttgattgtatt 229  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6796369 aatttctttgctttatgatctgcattgagtacctttatatgtgtaaatcattgttttcaaaattggccagtttgtcagctggtttgatcttgattgtatt 6796468  T
Q  230 gcagtctggttgaactggattgaaccgtggttggttcca 268  Q
    |||||||||||||||||||||||||||||||||||||||    
T  6796469 gcagtctggttgaactggattgaaccgtggttggttcca 6796507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 368
Target Start/End: Complemental strand, 16594443 - 16594401
Alignment:
Q  326 aatgatatctaaacatccattttttaacaacttttgtaacaac 368  Q
    |||||||| | |||||||||||||||||||||||||| |||||    
T  16594443 aatgatatttgaacatccattttttaacaacttttgtgacaac 16594401  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 368
Target Start/End: Original strand, 41173256 - 41173298
Alignment:
Q  326 aatgatatctaaacatccattttttaacaacttttgtaacaac 368  Q
    |||||||| |||||||||||||| | |||||||||||||||||    
T  41173256 aatgatatttaaacatccattttgtgacaacttttgtaacaac 41173298  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 320 - 367
Target Start/End: Original strand, 31425532 - 31425579
Alignment:
Q  320 tggagtaatgatatctaaacatccattttttaacaacttttgtaacaa 367  Q
    |||||||||||||| | |||||||||||||||||||||||||| ||||    
T  31425532 tggagtaatgatatttgaacatccattttttaacaacttttgtgacaa 31425579  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 322 - 369
Target Start/End: Original strand, 37143121 - 37143168
Alignment:
Q  322 gagtaatgatatctaaacatccattttttaacaacttttgtaacaacc 369  Q
    |||||||||||| | |||||||||||||||||||||||||| ||||||    
T  37143121 gagtaatgatatttgaacatccattttttaacaacttttgtgacaacc 37143168  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 368
Target Start/End: Complemental strand, 15927666 - 15927620
Alignment:
Q  322 gagtaatgatatctaaacatccattttttaacaacttttgtaacaac 368  Q
    ||||||| |||| | ||||||||||||||||||||||||||||||||    
T  15927666 gagtaataatatttgaacatccattttttaacaacttttgtaacaac 15927620  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 322 - 367
Target Start/End: Complemental strand, 31931090 - 31931045
Alignment:
Q  322 gagtaatgatatctaaacatccattttttaacaacttttgtaacaa 367  Q
    |||||||||||| | |||||||||||||||||||||||||| ||||    
T  31931090 gagtaatgatatttgaacatccattttttaacaacttttgtgacaa 31931045  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 368
Target Start/End: Original strand, 49875800 - 49875842
Alignment:
Q  326 aatgatatctaaacatccattttttaacaacttttgtaacaac 368  Q
    |||||||| | |||||||||||||||||||||||||| |||||    
T  49875800 aatgatattttaacatccattttttaacaacttttgtgacaac 49875842  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 359
Target Start/End: Original strand, 31664624 - 31664661
Alignment:
Q  322 gagtaatgatatctaaacatccattttttaacaacttt 359  Q
    |||||||||||| | |||||||||||||||||||||||    
T  31664624 gagtaatgatatttgaacatccattttttaacaacttt 31664661  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 322 - 369
Target Start/End: Original strand, 18982519 - 18982566
Alignment:
Q  322 gagtaatgatatctaaacatccattttttaacaacttttgtaacaacc 369  Q
    |||||||||||| | |||||||||||||||||||||||||| ||||||    
T  18982519 gagtaatgatatttgaacatccattttttaacaacttttgtgacaacc 18982566  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 362
Target Start/End: Original strand, 36775072 - 36775112
Alignment:
Q  322 gagtaatgatatctaaacatccattttttaacaacttttgt 362  Q
    |||||||||||| | ||||||||||||||||||||||||||    
T  36775072 gagtaatgatatttgaacatccattttttaacaacttttgt 36775112  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 368
Target Start/End: Original strand, 46859418 - 46859464
Alignment:
Q  322 gagtaatgatatctaaacatccattttttaacaacttttgtaacaac 368  Q
    |||||||||||| | | |||||||||||||||||||||||| |||||    
T  46859418 gagtaatgatatttgagcatccattttttaacaacttttgtgacaac 46859464  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 369
Target Start/End: Original strand, 36775112 - 36775153
Alignment:
Q  328 tgatatctaaacatccattttttaacaacttttgtaacaacc 369  Q
    |||||| | |||||||||||||||||||||||||| ||||||    
T  36775112 tgatatttgaacatccattttttaacaacttttgtgacaacc 36775153  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 324 - 368
Target Start/End: Complemental strand, 28982708 - 28982664
Alignment:
Q  324 gtaatgatatctaaacatccattttttaacaacttttgtaacaac 368  Q
    |||||||||| | |||||||||||||||||||||||||| |||||    
T  28982708 gtaatgatatttgaacatccattttttaacaacttttgtgacaac 28982664  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 321 - 368
Target Start/End: Complemental strand, 17182008 - 17181961
Alignment:
Q  321 ggagtaatgatatctaaacatccattttttaacaacttttgtaacaac 368  Q
    |||| |||||||| |||||| |||||||| ||||||||||||||||||    
T  17182008 ggagaaatgatatttaaacaaccatttttgaacaacttttgtaacaac 17181961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 368
Target Start/End: Original strand, 354276 - 354322
Alignment:
Q  322 gagtaatgatatctaaacatccattttttaacaacttttgtaacaac 368  Q
    |||||||||| | | |||||||||||||||||||||||||| |||||    
T  354276 gagtaatgatgtttgaacatccattttttaacaacttttgtgacaac 354322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 369
Target Start/End: Complemental strand, 48814879 - 48814832
Alignment:
Q  322 gagtaatgatatctaaacatccattttttaacaacttttgtaacaacc 369  Q
    |||||||||||| | ||||| |||||||||||||||||||| ||||||    
T  48814879 gagtaatgatatttgaacattcattttttaacaacttttgtgacaacc 48814832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 369
Target Start/End: Original strand, 2819256 - 2819300
Alignment:
Q  325 taatgatatctaaacatccattttttaacaacttttgtaacaacc 369  Q
    ||||||||| | |||||||||||||||||||||||| | ||||||    
T  2819256 taatgatatttgaacatccattttttaacaacttttatgacaacc 2819300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 369
Target Start/End: Complemental strand, 21515007 - 21514961
Alignment:
Q  323 agtaatgatatctaaacatccattttttaacaacttttgtaacaacc 369  Q
    ||||||||||| | ||||||||||||||||||| |||||| ||||||    
T  21515007 agtaatgatatttgaacatccattttttaacaatttttgtgacaacc 21514961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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