View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0766_high_12 (Length: 384)

Name: NF0766_high_12
Description: NF0766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0766_high_12
NF0766_high_12
[»] chr4 (3 HSPs)
chr4 (217-371)||(23424702-23424860)
chr4 (217-371)||(39655548-39655705)
chr4 (299-371)||(39429622-39429694)
[»] chr2 (1 HSPs)
chr2 (217-371)||(20991678-20991836)
[»] chr5 (2 HSPs)
chr5 (217-371)||(9923619-9923776)
chr5 (217-371)||(1970010-1970167)
[»] chr3 (1 HSPs)
chr3 (217-371)||(43768420-43768577)
[»] chr1 (2 HSPs)
chr1 (217-363)||(50427812-50427962)
chr1 (302-371)||(14742047-14742116)
[»] chr8 (2 HSPs)
chr8 (217-371)||(7054478-7054633)
chr8 (299-371)||(42345791-42345863)
[»] chr7 (1 HSPs)
chr7 (179-218)||(32903997-32904036)


Alignment Details
Target: chr4 (Bit Score: 86; Significance: 5e-41; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 217 - 371
Target Start/End: Original strand, 23424702 - 23424860
Alignment:
Q  217 ttttctattgctctattacgtataaggcnnnnnnnnctccagatctggaatattctcacacaatagggtcatcaatattctca----catgaacattctt 312  Q
    ||||||||||||||||||||||||||||        ||| |||||||||||||||||| |||||||||||| |||||||||||    |||||||||||||    
T  23424702 ttttctattgctctattacgtataaggcaaaaaaaactcaagatctggaatattctcatacaatagggtcaccaatattctcatggacatgaacattctt 23424801  T
Q  313 gttcattttctcaaagggtagttgaatttctattgctgcatcattttttcttctccttc 371  Q
    |||||| ||||||||||||||||||||||||||||||||||  |  |||||||||||||    
T  23424802 gttcatattctcaaagggtagttgaatttctattgctgcattttcatttcttctccttc 23424860  T

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Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 217 - 371
Target Start/End: Original strand, 39655548 - 39655705
Alignment:
Q  217 ttttctattgctctattacgtataaggcnnnnnnnnctccagatctggaatattctcacacaatagggtcatcaatattctca----catgaacattctt 312  Q
    ||||||||||||||||||||||||||||        ||| ||||| ||||||||||||  ||||||||||| |||||||||||    |||||||||||||    
T  39655548 ttttctattgctctattacgtataaggcaaaagaa-ctcaagatcgggaatattctcatgcaatagggtcaccaatattctcatggacatgaacattctt 39655646  T
Q  313 gttcattttctcaaagggtagttgaatttctattgctgcatcattttttcttctccttc 371  Q
     ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39655647 attcatattctcaaagggtagttgaatttctattgctgcatcattttttcttctccttc 39655705  T

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Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 299 - 371
Target Start/End: Complemental strand, 39429694 - 39429622
Alignment:
Q  299 acatgaacattcttgttcattttctcaaagggtagttgaatttctattgctgcatcattttttcttctccttc 371  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||  || |||| ||||||||    
T  39429694 acatgaacattcttgttcatattctcaaagggtagttgaatttctattgctgcatttttatttcatctccttc 39429622  T

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Target: chr2 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 217 - 371
Target Start/End: Complemental strand, 20991836 - 20991678
Alignment:
Q  217 ttttctattgctctattacgtataaggcnnnnnnnnctccagatctggaatattctcacacaatagggtcatcaatattctca----catgaacattctt 312  Q
    ||||||||||||||||||||||||||||        ||| |||||||||||||||||| |||||||||||| |||||||||||    |||||||||||||    
T  20991836 ttttctattgctctattacgtataaggcaaaaaaaactcaagatctggaatattctcatacaatagggtcaccaatattctcatggacatgaacattctt 20991737  T
Q  313 gttcattttctcaaagggtagttgaatttctattgctgcatcattttttcttctccttc 371  Q
    |||||| ||||||||||||||||||||||||||||||||||  |  |||||||||||||    
T  20991736 gttcatattctcaaagggtagttgaatttctattgctgcattttcatttcttctccttc 20991678  T

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Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 217 - 371
Target Start/End: Original strand, 9923619 - 9923776
Alignment:
Q  217 ttttctattgctctattacgtataaggcnnnnnnnnctccagatctggaatattctcacacaatagggtcatcaatattctca----catgaacattctt 312  Q
    ||||||||||||||||||||||||||||        ||| |||||||||||||||||| |||||||||||| |||||||||||    |||||||||||||    
T  9923619 ttttctattgctctattacgtataaggcaaaaaaa-ctcaagatctggaatattctcatacaatagggtcaccaatattctcatggacatgaacattctt 9923717  T
Q  313 gttcattttctcaaagggtagttgaatttctattgctgcatcattttttcttctccttc 371  Q
    |||||| ||||||||||||||||||||||||||||||||||  || |||||||||||||    
T  9923718 gttcatattctcaaagggtagttgaatttctattgctgcatttttatttcttctccttc 9923776  T

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Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 217 - 371
Target Start/End: Original strand, 1970010 - 1970167
Alignment:
Q  217 ttttctattgctctattacgtataaggcnnnnnnnnctccagatctggaatattctcacacaatagggtcatcaatattct----cacatgaacattctt 312  Q
    ||||||||||||||||||||||||||||        ||| |||||||||||||||||| |||||||||||| |||||||||     ||||||||||||||    
T  1970010 ttttctattgctctattacgtataaggcaaaaaaa-ctcaagatctggaatattctcatacaatagggtcaccaatattcttatggacatgaacattctt 1970108  T
Q  313 gttcattttctcaaagggtagttgaatttctattgctgcatcattttttcttctccttc 371  Q
    |||||| |||||||||| |||||||||||||||||||||||  |  |||||||||||||    
T  1970109 gttcatattctcaaaggatagttgaatttctattgctgcattttcatttcttctccttc 1970167  T

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Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 217 - 371
Target Start/End: Complemental strand, 43768577 - 43768420
Alignment:
Q  217 ttttctattgctctattacgtataaggcnnnnnnnnctccagatctggaatattctcacacaatagggtcatcaatattctca----catgaacattctt 312  Q
    ||||||||||||||||||||||||||||        ||| |||||||||||||||||| |||||||||||| |||||||||||    |||||||||||||    
T  43768577 ttttctattgctctattacgtataaggcaaaaaaa-ctcaagatctggaatattctcatacaatagggtcaccaatattctcatggacatgaacattctt 43768479  T
Q  313 gttcattttctcaaagggtagttgaatttctattgctgcatcattttttcttctccttc 371  Q
    |||||| ||||||||||||||||||||||||||||||||||  || |||||||||||||    
T  43768478 gttcatattctcaaagggtagttgaatttctattgctgcatttttatttcttctccttc 43768420  T

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Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 217 - 363
Target Start/End: Complemental strand, 50427962 - 50427812
Alignment:
Q  217 ttttctattgctctattacgtataaggcnnnnnnnnctccagatctggaatattctcacacaatagggtcatcaatattctca----catgaacattctt 312  Q
    |||||||||||||||||||||| |||||        ||| ||||||||||||||||||  ||||||||||| |||||||||||    |||||||||||||    
T  50427962 ttttctattgctctattacgtagaaggcaaaaaaaactcaagatctggaatattctcatgcaatagggtcaccaatattctcatggacatgaacattctt 50427863  T
Q  313 gttcattttctcaaagggtagttgaatttctattgctgcatcattttttct 363  Q
    |||||| ||| |||||||||||||||||||||||| |||||||||||||||    
T  50427862 gttcatattcccaaagggtagttgaatttctattgttgcatcattttttct 50427812  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 302 - 371
Target Start/End: Original strand, 14742047 - 14742116
Alignment:
Q  302 tgaacattcttgttcattttctcaaagggtagttgaatttctattgctgcatcattttttcttctccttc 371  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14742047 tgaagattcttgttcatattctcaaagggtagttgaatttctattgctgcatcattttttcttctccttc 14742116  T

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Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 217 - 371
Target Start/End: Complemental strand, 7054633 - 7054478
Alignment:
Q  217 ttttctattgctctattacgtataaggcnnnnnnnnctccagatctggaatattctcacacaatagggtcatcaatattctca----catgaacattctt 312  Q
    |||||||||||| |||||||||||||||        ||| ||||||| ||||||||||  |||||| |||| ||||||| |||    |||  ||||||||    
T  7054633 ttttctattgctttattacgtataaggcaaaagaa-ctcaagatctgaaatattctcatgcaatagagtcaccaatattttcatggacat--acattctt 7054537  T
Q  313 gttcattttctcaaagggtagttgaatttctattgctgcatcattttttcttctccttc 371  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  7054536 gttcatattcttaaagggtagttgaatttctattgctgcatcattttttcttctccttc 7054478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 299 - 371
Target Start/End: Complemental strand, 42345863 - 42345791
Alignment:
Q  299 acatgaacattcttgttcattttctcaaagggtagttgaatttctattgctgcatcattttttcttctccttc 371  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||||| ||  || |||| ||||||||    
T  42345863 acatgaacattcttgttcatattctcaaaggatagttgaatttctattgctgaatttttatttcatctccttc 42345791  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 179 - 218
Target Start/End: Original strand, 32903997 - 32904036
Alignment:
Q  179 ttcattatctttatatcatgatcagaatcaaatctaactt 218  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  32903997 ttcattatctttatatcatgatcagaatcagatctaactt 32904036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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