View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0766_high_14 (Length: 379)
Name: NF0766_high_14
Description: NF0766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0766_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 17998790 - 17998517
Alignment:
| Q |
1 |
taaagtatatgtaaatcaatccatttggtcccacctatcttaatgctagggactaaatagacgaatttcatatattnnnnnnnn--gatgaatttaatat |
98 |
Q |
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| T |
17998790 |
taaagtatatgtaaatcaatccatttggtcccacctatcttaatgctagggactaaatagatgaatttcatatattaaaaaaagaagatgaatttaatat |
17998691 |
T |
|
| Q |
99 |
aattttaggactatttaatacatttgtatagttaaaggatgaaattgataagatgttgatagttgagagactaaaccga---tgatttattaatttgaga |
195 |
Q |
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|||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||| |
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| T |
17998690 |
aattttaggactatttaatatatttgtatagttaaaggattaaattgataagatgttgatagttcagagactaaaccgatgatgatttgttaatttgaga |
17998591 |
T |
|
| Q |
196 |
cactagattgggactaaattaaaatgtctatatggtttgtttgataagaccaataaactaacttataacttata |
269 |
Q |
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|||||| | ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
17998590 |
cactaggtcgggactaaattaaaatgtccatatggtctgtttgataagaccaataaactaacttataacttata |
17998517 |
T |
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