View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0766_high_2 (Length: 650)
Name: NF0766_high_2
Description: NF0766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0766_high_2 |
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| [»] scaffold0153 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 594; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 30 - 643
Target Start/End: Complemental strand, 48662800 - 48662187
Alignment:
| Q |
30 |
tgtactccaaggtatcctgttgctcaagctccacattcaagtcctccacatcggaatcactctgaagcaaacgcaaaccatcaccgccttcctcatcact |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48662800 |
tgtactccaaggtatcctgttgctcaagctccacattcaagtcctccacatcggaatcactctgaagcaaacgcaaaccatcaccgccttcctcatcact |
48662701 |
T |
|
| Q |
130 |
atcactatccgcctcaaacttcttcttccttcctctataaccaacaagactaagaagcttctccctccataaaaacaaaggagatttctcaatcagctcc |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48662700 |
atcactatccgcctcaaacttcttcttccttcctctataaccaacaagactaagaagcttctccctccataaaaacaaaggagatttctcaatcagctcc |
48662601 |
T |
|
| Q |
230 |
gaaccttcataagcttctgtcaaaaacacactaaaccttttccccctctcagaaacataaaaaataccacaatgtttgagtaaaagcctcatcaacttct |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48662600 |
gaaccttcataagcttctgtcaaaaacacactaaaccttttccccctctcagaaacgtaaaaaataccacaatgtttgagtaaaagcctcatcaacttct |
48662501 |
T |
|
| Q |
330 |
gaggcataactaactcccaacgaaagtgagtaaggtgatctgtcaccaacctcttctcaactgtaaaactaagcaattcatgcataacagcaacagccct |
429 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48662500 |
gaggcataactaactcccaacgaaagtgagtaaggtgatctgtcaccaacctcttctcaactgtaaaactaagcaattcatgcataacagcaacagccct |
48662401 |
T |
|
| Q |
430 |
cttatcaaattctaaagaacccggttttaaacccttcgcatcggcataaggagacaaataagtcctctcctgaaacatttttatcttttcaccataataa |
529 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48662400 |
cttatcaaattctaaagaacccggttttaaacccttcgcatcggcataaggagacaaataagtcctctcctgaaacatttttatcttttcaccataataa |
48662301 |
T |
|
| Q |
530 |
ctatgcacccttttaaaatttgcaggaaattttaaaggaaatggcagagaaagcaaacccggagtatgttcggtttcagttaccccttccacaatcatct |
629 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
48662300 |
ctatgcacccttttaaaatttgcaggaaatttcaaaggaaatggcagagaaagcaaacccggagtatgttcggtttcggttaccccttccaaaatcatct |
48662201 |
T |
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| Q |
630 |
tattcttcatctca |
643 |
Q |
| |
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|||||||| ||||| |
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| T |
48662200 |
tattcttcttctca |
48662187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0153 (Bit Score: 586; Significance: 0; HSPs: 1)
Name: scaffold0153
Description:
Target: scaffold0153; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 30 - 643
Target Start/End: Complemental strand, 37571 - 36958
Alignment:
| Q |
30 |
tgtactccaaggtatcctgttgctcaagctccacattcaagtcctccacatcggaatcactctgaagcaaacgcaaaccatcaccgccttcctcatcact |
129 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37571 |
tgtactccaaggtatcctgttgctcaagctccacattcaagtcctcctcatctgaatcactctgaagcaaacgcaaaccatcaccgccttcctcatcact |
37472 |
T |
|
| Q |
130 |
atcactatccgcctcaaacttcttcttccttcctctataaccaacaagactaagaagcttctccctccataaaaacaaaggagatttctcaatcagctcc |
229 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37471 |
atcactatccgcctcaaacttcttcttccttcctctataaccaacaagactaagaagcttctccctccataaaaacaaaggagatttctcaatcagctcc |
37372 |
T |
|
| Q |
230 |
gaaccttcataagcttctgtcaaaaacacactaaaccttttccccctctcagaaacataaaaaataccacaatgtttgagtaaaagcctcatcaacttct |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37371 |
gaaccttcataagcttctgtcaaaaacacactaaaccttttccccctctcagaaacttaaaaaataccacaatgtttgagtaaaagcctcatcaacttct |
37272 |
T |
|
| Q |
330 |
gaggcataactaactcccaacgaaagtgagtaaggtgatctgtcaccaacctcttctcaactgtaaaactaagcaattcatgcataacagcaacagccct |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37271 |
gaggcataactaactcccaacgaaagtgagtaaggtgatctgtcaccaacctcttctcaactgtaaaactaagcaattcatgcataacagcaacagccct |
37172 |
T |
|
| Q |
430 |
cttatcaaattctaaagaacccggttttaaacccttcgcatcggcataaggagacaaataagtcctctcctgaaacatttttatcttttcaccataataa |
529 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37171 |
cttatcaaattctaaagaacccggttttaaacccttcgcatcggcataaggagacaaataagtcctctcctgaaacatttttatcttttcaccataataa |
37072 |
T |
|
| Q |
530 |
ctatgcacccttttaaaatttgcaggaaattttaaaggaaatggcagagaaagcaaacccggagtatgttcggtttcagttaccccttccacaatcatct |
629 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
37071 |
ctatgcacccttttaaaatttgcaggaaatttcaaaggaaatggcagagaaagcaaacccggagtatgttcggtttcggttaccccttccataatcatct |
36972 |
T |
|
| Q |
630 |
tattcttcatctca |
643 |
Q |
| |
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|||||||| ||||| |
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|
| T |
36971 |
tattcttcttctca |
36958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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