View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0766_high_28 (Length: 251)
Name: NF0766_high_28
Description: NF0766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0766_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 1553919 - 1553696
Alignment:
| Q |
1 |
aatcatatgcttatccacactaccactgaatctctaacatatattacataaatcaatcatataactctcttgcataaatcttagatagtagcacatagtg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1553919 |
aatcatatgcttatccacactaccactgaatctctaacatatattacataaatcaatcatataactctcttgcataaatctcagatagtagcacatagtg |
1553820 |
T |
|
| Q |
101 |
tcgaagctcaaacatgctatagcggtatagcagatagagaatgaccgctacaagtaatcataaattccaaaaacatacataaatactcaaaaacacgtat |
200 |
Q |
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|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1553819 |
tcgaagctcaaacatgccatagcggtatagcagatagagaatgaccgctacaagtaatcataaattccaaaaacatacataaatactcaaaaacacgtat |
1553720 |
T |
|
| Q |
201 |
aaggtctttgagaaatccccctaa |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
1553719 |
aaggtctttgagaaatccccctaa |
1553696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 1549799 - 1549722
Alignment:
| Q |
1 |
aatcatatgcttatccacactaccactgaatctctaacatatattacataaatcaatcatataactctcttgcataaa |
78 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||| ||||||| ||||||||||||||| | |||||||||||||||| |
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| T |
1549799 |
aatcatacgcttatccacactacaactgaatctcttacatatagtacataaatcaatcagaaaactctcttgcataaa |
1549722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 195
Target Start/End: Original strand, 33689577 - 33689620
Alignment:
| Q |
152 |
aagtaatcataaattccaaaaacatacataaatactcaaaaaca |
195 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||| |
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|
| T |
33689577 |
aagtaaacataaattccaacaacatacataaatactcaaaaaca |
33689620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 193
Target Start/End: Complemental strand, 6394928 - 6394887
Alignment:
| Q |
152 |
aagtaatcataaattccaaaaacatacataaatactcaaaaa |
193 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||| |
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|
| T |
6394928 |
aagtaaacataaattccaacaacatacataaatactcaaaaa |
6394887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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