View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0766_low_1 (Length: 940)

Name: NF0766_low_1
Description: NF0766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0766_low_1
NF0766_low_1
[»] chr7 (11 HSPs)
chr7 (102-934)||(38650486-38651328)
chr7 (104-409)||(43655851-43656157)
chr7 (102-874)||(32215623-32216394)
chr7 (231-745)||(27293637-27294151)
chr7 (291-871)||(8751736-8752316)
chr7 (203-415)||(17263119-17263331)
chr7 (203-409)||(22358829-22359035)
chr7 (111-166)||(3091954-3092009)
chr7 (104-221)||(21120501-21120617)
chr7 (203-259)||(13428100-13428156)
chr7 (109-150)||(13427999-13428040)
[»] chr8 (11 HSPs)
chr8 (111-828)||(9017369-9018087)
chr8 (231-874)||(21313058-21313701)
chr8 (234-726)||(8304788-8305280)
chr8 (291-458)||(20877434-20877601)
chr8 (203-474)||(29934352-29934623)
chr8 (203-264)||(15172684-15172745)
chr8 (102-150)||(39143299-39143347)
chr8 (102-168)||(21313761-21313827)
chr8 (109-150)||(39919347-39919388)
chr8 (675-814)||(20877818-20877956)
chr8 (810-871)||(20879850-20879911)
[»] chr1 (4 HSPs)
chr1 (102-726)||(16423239-16423862)
chr1 (199-650)||(8303892-8304343)
chr1 (203-264)||(12527082-12527143)
chr1 (203-261)||(33567291-33567349)
[»] chr4 (16 HSPs)
chr4 (106-308)||(52762757-52762959)
chr4 (102-563)||(17712716-17713180)
chr4 (203-402)||(22322555-22322754)
chr4 (579-828)||(22322931-22323180)
chr4 (228-370)||(1463103-1463245)
chr4 (363-420)||(39868042-39868099)
chr4 (363-447)||(28067908-28067992)
chr4 (98-150)||(42396736-42396788)
chr4 (203-264)||(135987-136048)
chr4 (331-456)||(11821180-11821305)
chr4 (205-261)||(2632897-2632953)
chr4 (363-409)||(17185999-17186045)
chr4 (363-409)||(17187609-17187655)
chr4 (588-726)||(17713205-17713343)
chr4 (203-337)||(37014054-37014188)
chr4 (351-432)||(21141632-21141713)
[»] chr5 (15 HSPs)
chr5 (102-573)||(1585034-1585504)
chr5 (102-924)||(17945918-17946749)
chr5 (231-874)||(17696205-17696848)
chr5 (231-429)||(15504603-15504802)
chr5 (204-402)||(16119743-16119941)
chr5 (203-264)||(23257040-23257101)
chr5 (234-409)||(9194710-9194885)
chr5 (222-324)||(7124089-7124191)
chr5 (203-253)||(12824482-12824532)
chr5 (203-253)||(12851546-12851596)
chr5 (206-456)||(13390502-13390752)
chr5 (219-409)||(40632806-40632996)
chr5 (363-409)||(26397594-26397640)
chr5 (672-717)||(9195147-9195192)
chr5 (672-721)||(26397903-26397952)
[»] chr6 (14 HSPs)
chr6 (231-874)||(2854286-2854928)
chr6 (201-564)||(29361226-29361589)
chr6 (674-919)||(29359637-29359890)
chr6 (215-409)||(4103231-4103425)
chr6 (206-409)||(9756209-9756416)
chr6 (206-456)||(12607396-12607646)
chr6 (315-411)||(5195281-5195377)
chr6 (363-409)||(31848352-31848398)
chr6 (202-266)||(14782125-14782189)
chr6 (203-259)||(31848192-31848248)
chr6 (363-409)||(5675798-5675844)
chr6 (868-902)||(17798721-17798755)
chr6 (660-722)||(31848649-31848711)
chr6 (672-721)||(4103688-4103737)
[»] chr3 (7 HSPs)
chr3 (330-852)||(12214801-12215323)
chr3 (205-450)||(19667625-19667870)
chr3 (197-402)||(10751978-10752183)
chr3 (231-409)||(21477911-21478089)
chr3 (109-150)||(7937444-7937485)
chr3 (102-167)||(21477784-21477849)
chr3 (868-897)||(55428282-55428311)
[»] scaffold0116 (2 HSPs)
scaffold0116 (330-858)||(42462-42990)
scaffold0116 (330-858)||(46382-46910)
[»] chr2 (10 HSPs)
chr2 (106-283)||(33006736-33006912)
chr2 (593-796)||(15140031-15140234)
chr2 (201-273)||(32603178-32603250)
chr2 (102-156)||(39994652-39994706)
chr2 (102-150)||(10005233-10005281)
chr2 (102-150)||(11123653-11123701)
chr2 (205-264)||(26404869-26404928)
chr2 (363-409)||(45468453-45468499)
chr2 (363-420)||(3375851-3375908)
chr2 (326-391)||(12915512-12915577)
[»] scaffold0074 (1 HSPs)
scaffold0074 (203-458)||(36184-36439)
[»] scaffold0267 (1 HSPs)
scaffold0267 (102-168)||(10951-11017)
[»] scaffold0423 (1 HSPs)
scaffold0423 (231-380)||(10187-10336)


Alignment Details
Target: chr7 (Bit Score: 684; Significance: 0; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 684; E-Value: 0
Query Start/End: Original strand, 102 - 934
Target Start/End: Complemental strand, 38651328 - 38650486
Alignment:
Q  102 accccgtacaaggtgtgctaaagtgatgaatcacctaatgtctgttacatcatcacgacacctaaaacagatgtcatcacaactaaaaataaagcataaa 201  Q
    |||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  38651328 accccgcataaggtatgctaaagtgatgaatcacctaatgtctgttacatcatcacgacacctaaaacagatgtcatcacaactaaaaataaagcacaaa 38651229  T
Q  202 caaattacatgatacccatacataggagtggatgtctccaccaatcgtgaaaatcaaaagcaacaggcacaaagtttgaagatagtcacaagaaggaatt 301  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||    
T  38651228 caaattacatgacacccatacataggagtggatgtctccaccaatcgtgaaaatcaaaagcaataggcacaaagtttgaagatagccataagaaggaatt 38651129  T
Q  302 tagctttactttatcaacaatacggtgaggatcaataaccgtatctgtgaagactcggttgtttctctccttccatatagcccaaacacacgcaagccaa 401  Q
    ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  38651128 tagctttactttatcaacaatacggagaggatcaataaccgtatttgtgaagactcggttgtttctctccttccatatagcccaaacacacgcaagtcaa 38651029  T
Q  402 acaaccttcaaatacaaatgtgtagatcgcggtaaccctgccaaatgaacaaactaagtgtaatgatccttaatgctacctgggggaacaaaatagaacc 501  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  38651028 acaaccttcaaatacaaatgtgtagatcgcggtaaccccgccaaatgaacaaactaagtgtaatgatccttaatgttacatgggggaacaaaatagaacc 38650929  T
Q  502 caagccattgacagagtaaaatccaaaccattctaaacgattcacaaccaatgaagagatgatccgttgtttttatcaaatcgcatcctccaacacataa 601  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  38650928 caagccattgacagagtaaaatccaaaccattctaaacgattcacaaccaatgaagagatgatccgttgtttttatcaaatcgcatcctccaatacataa 38650829  T
Q  602 actgtcattaggttgaagaacacgacgtcgcgccagatctgatctcgtaagaattttgtcttgaatgaggcgccaagcaaaaagagaaacctttgtcgga 701  Q
    | ||||||||| ||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38650828 aatgtcattagattgaagaacacgacgtcgcaccagatttgatctcgtaggaattttgtcttgaatgaggcgccaagcaaaaagagaaacctttgtcgga 38650729  T
Q  702 accactttgtgccacacatcaataactgcaccatcagccacctgttcgtcaatagttgttaggaaatgataagttccgcgaaccgagtagccatggacaa 801  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||     
T  38650728 accagtttgtgccacacatcaataactacaccatcagccacctgttcgtcaatagttgttaggaaacgataagttccgcgaaccgagtagccatgaacag 38650629  T
Q  802 gatcaagtaaccaccgccaatggtccttagtataaacctacaaaacaacgttttccaacaaagtgacac----------actctcctcctcccaagccaa 891  Q
    ||||||||||| ||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||          |||||||||||||||||||||    
T  38650628 gatcaagtaactaccgccaatggtcctcagtatcaacctgcaaaacaacgttttccaacaaagtgacacactccctcacactctcctcctcccaagccaa 38650529  T
Q  892 cagacgccttctccaaccccacccattatcgccttcatctcac 934  Q
    ||||||| |||||||||||||||||||||||||||| ||||||    
T  38650528 cagacgcattctccaaccccacccattatcgccttcttctcac 38650486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 104 - 409
Target Start/End: Complemental strand, 43656157 - 43655851
Alignment:
Q  104 cccgtacaaggtgtgctaaagtgatgaatcacctaatgtctgttacatcatcacgacacctaaaacagatgtcatcacaactaaaaataaagcataaa-c 202  Q
    |||| |||||||||||||||||||||||||| ||||| |||| |||| || |  | |||||||   ||||| || ||| |  ||||||||| |  ||| |    
T  43656157 cccgcacaaggtgtgctaaagtgatgaatcatctaatatctgatacaacaccgtggcacctaatgaagatgccaacaccaagaaaaataaaactcaaaac 43656058  T
Q  203 aaattacatgatacccatacataggagtggatgtctccaccaatcgtgaaaatcaaaagcaacaggcacaaagtttgaagatagtcacaagaaggaattt 302  Q
    | ||||||||| ||||||||| ||||||||||||||||||||||| |||||| ||||||| | || |||| |||| |||||||| || | ||||||||||    
T  43656057 acattacatgacacccatacaaaggagtggatgtctccaccaatcatgaaaaccaaaagctaaagacacatagttcgaagatagccaaaggaaggaattt 43655958  T
Q  303 agctttactttatcaacaatacggtgaggatcaataaccgtatctgtgaagactcggttgtttctctccttccatatagcccaaacacacgcaagccaaa 402  Q
    | ||||||||| || ||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||| || ||||||||||| ||||||||||    
T  43655957 aactttactttttcgacaatacggagaggatcaataaccgtatctgtgaaaactcagttgtttctctccttccaaattgcccaaacacaagcaagccaaa 43655858  T
Q  403 caacctt 409  Q
     ||||||    
T  43655857 taacctt 43655851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 102 - 874
Target Start/End: Original strand, 32215623 - 32216394
Alignment:
Q  102 accccgtacaaggtgtgctaaagtgatgaatcacctaatgtctgttacatcatcacgacacctaa-aacagatgtcatcacaactaaaaataaagcataa 200  Q
    |||||| |||||||||||||||||||||||||  ||||| ||||||||| || |||  ||||||| || ||||| || |||  ||||| | |||| |  |    
T  32215623 accccgcacaaggtgtgctaaagtgatgaatcctctaatatctgttacaacaccacatcacctaacaaaagatgccaccac--ctaaacaaaaaggacca 32215720  T
Q  201 acaaattacatgatacccatacataggagtggatgtctccaccaatcgtgaaaatcaaaagcaacaggcacaaagtttgaagatagtcacaagaaggaat 300  Q
    |  | ||| || | |||||||||    || ||||||||||||||||||| |||  | ||||||| |||| |||  || ||||| || || |  || ||||    
T  32215721 aacacttaaatcacacccatacaataaaggggatgtctccaccaatcgtaaaagccgaaagcaataggctcaatattcgaagaaagccagagaaaagaat 32215820  T
Q  301 ttagctttactttatcaacaatacggtgaggatcaataaccgtatctgtgaagactcggttgtttctctccttccatatagcccaaacacacgcaagcca 400  Q
    ||| ||| ||||| ||||||||| |     ||||||||||||||||  |||| || |||||||||| |||||||||||| ||||||||||| ||||||||    
T  32215821 ttaacttaactttttcaacaatatgtaacagatcaataaccgtatcattgaaaacacggttgtttcgctccttccatattgcccaaacacaagcaagcca 32215920  T
Q  401 aacaaccttcaaatacaaatgtgtagatcgcggtaaccctgccaaatgaacaaactaagtgtaatgatccttaatgctacctgggggaacaaaatagaac 500  Q
     | |||||| ||| ||| ||| |||||||  |  || || |||||||||  ||||| | ||||||||||||||||   |||||| ||||||||| | |||    
T  32215921 tataaccttaaaaaacacatgagtagatctagacaaacccgccaaatgagtaaactgaatgtaatgatccttaatagaacctggaggaacaaaagaaaac 32216020  T
Q  501 ccaagccattgacagagtaaaatccaaaccattctaaacgattcacaaccaatgaagagatgatccgttgtttttatcaaatcgcatcctccaacacata 600  Q
    |||||||| ||||| ||||||| ||||||  | | ||| ||||| || || |||||||||||| |||| || |     |   | || ||||||||||| |    
T  32216021 ccaagccagtgacaaagtaaaacccaaacactaccaaaagattcgcatccgatgaagagatgacccgtcgtctcggatagtccacaccctccaacacaca 32216120  T
Q  601 aactgtcattaggttgaagaacacgacgtcgcgccagatctgatctcgtaagaattttgtcttgaatgaggcgccaagcaaaaagagaaacctttgtcgg 700  Q
    || |||| || ||||||||||   |||| ||| |||  | || ||| ||| || || | |||||||  || ||||||||||||||  | || ||||||||    
T  32216121 aattgtcgtttggttgaagaatgagacgacgcaccaagtttgctcttgtaggatttctatcttgaagcagccgccaagcaaaaagcaacacttttgtcgg 32216220  T
Q  701 aaccactttgtgccacacatcaataactgcaccatcagccacctgttcgtcaatagttgttaggaaatgataagttccgcgaaccgagtagccatggaca 800  Q
    ||||| |||||||||||| |||||||  ||| ||| |||||||||| | || | | |||| || ||| ||||||| ||   |||    || ||||| |||    
T  32216221 aaccaatttgtgccacacgtcaataaaagcatcattagccacctgtacttccaaatttgtgagaaaacgataagtcccatcaacactatatccatgaaca 32216320  T
Q  801 agatcaagtaaccaccgccaatggtccttagtataaacctacaaaacaacgttttccaacaaagtgacacactc 874  Q
     |||| ||||||||||||||| |||||| | ||| ||||| |||||||| ||| ||||  ||||||| ||||||    
T  32216321 ggatctagtaaccaccgccaacggtcctgaatatgaacctgcaaaacaatgttatccagtaaagtgatacactc 32216394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 231 - 745
Target Start/End: Complemental strand, 27294151 - 27293637
Alignment:
Q  231 ggatgtctccaccaatcgtgaaaatcaaaagcaacaggcacaaagtttgaagatagtcacaagaaggaatttagctttactttatcaacaatacggtgag 330  Q
    ||||||||||||||||||| |||  ||||||||| |||| |||  || ||||| || || |  || ||||||| ||| ||||| || | |||| |    |    
T  27294151 ggatgtctccaccaatcgtaaaagccaaaagcaataggctcaatattcgaagaaagccagagaaaagaatttaacttaactttttcgagaatatgtaacg 27294052  T
Q  331 gatcaataaccgtatctgtgaagactcggttgtttctctccttccatatagcccaaacacacgcaagccaaacaaccttcaaatacaaatgtgtagatcg 430  Q
    ||||||||||||||||  |||| || |||||||||| |||||||||||| ||||||||||| |||||||||| |||||| ||| ||| ||| |||||||     
T  27294051 gatcaataaccgtatcattgaaaacacggttgtttcgctccttccatattgcccaaacacaagcaagccaaataaccttaaaaaacacatgagtagatct 27293952  T
Q  431 cggtaaccctgccaaatgaacaaactaagtgtaatgatccttaatgctacctgggggaacaaaatagaacccaagccattgacagagtaaaatccaaacc 530  Q
     || || || |||||||||  ||||| |  |||||||||||||||   |||||| ||||||||| | ||||||||||| ||||| ||||||| ||||||     
T  27293951 aggcaaacccgccaaatgagtaaactgaaagtaatgatccttaatagaacctggaggaacaaaagaaaacccaagccagtgacaaagtaaaacccaaaca 27293852  T
Q  531 attctaaacgattcacaaccaatgaagagatgatccgttgtttttatcaaatcgcatcctccaacacataaactgtcattaggttgaagaacacgacgtc 630  Q
     ||| |||  |||| || |||||||| |||||| |||| ||||     | | | || ||||||||||||| | |||| || ||||||||||   |||| |    
T  27293851 cttccaaaatattcgcatccaatgaatagatgacccgtcgtttcggatagaccacaccctccaacacatacattgtcgtttggttgaagaatgagacgac 27293752  T
Q  631 gcgccagatctgatctcgtaagaattttgtcttgaatgaggcgccaagcaaaaagagaaacctttgtcggaaccactttgtgccacacatcaataactgc 730  Q
     | ||| || || ||| ||| ||||| |||||||||  |  |||||||||||||| || || ||| ||||||||| ||| |||||||  |||||||  ||    
T  27293751 acaccaaatttgctcttgtaggaattctgtcttgaagcaaccgccaagcaaaaagcgacacttttttcggaaccaatttatgccacatgtcaataaaagc 27293652  T
Q  731 accatcagccacctg 745  Q
    | ||| |||||||||    
T  27293651 atcatgagccacctg 27293637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 291 - 871
Target Start/End: Complemental strand, 8752316 - 8751736
Alignment:
Q  291 aagaaggaatttagctttactttatcaacaatacggtgaggatcaataaccgtatctgtgaagactcggttgtttctctccttccatatagcccaaacac 390  Q
    ||||||||||| ||||| ||||| || ||||||  |||||||||||||||||  | |||||||||||||||||||||||| ||||| || ||||||||||    
T  8752316 aagaaggaattaagcttcactttttctacaatattgtgaggatcaataaccgcttatgtgaagactcggttgtttctctctttccaaattgcccaaacac 8752217  T
Q  391 acgcaagccaaacaaccttcaaatacaaatgtgtagatcgcggtaaccctgccaaatgaacaaactaagtgtaatgatccttaatgctacctgggggaac 490  Q
    | ||||||||||  ||||| ||||| || ||||| |||| || ||| || |||| ||||| ||||| |  ||| |||||   |||| | |||||   |||    
T  8752216 aagcaagccaaattaccttaaaataaaattgtgttgatctcgttaatcccgccatatgaataaactgacagtagtgatctgcaatggtgcctggaccaac 8752117  T
Q  491 aaaatagaacccaagccattgacagagtaaaatccaaaccattctaaacgattcacaaccaatgaagagatgatccgttgtttttatcaaatcgcatcct 590  Q
    |||| | ||  |||||||  ||||||  | | |||||||  ||| |||  | |||||   |||||| ||||| | ||| || |   | ||| | ||||||    
T  8752116 aaaagaaaaatcaagccaaagacagacaagattccaaactcttccaaataaatcacattgaatgaaaagatggtacgtcgtctcactgaaaccacatcct 8752017  T
Q  591 ccaacacataaactgtcattaggttgaagaacacgacgtcgcgccagatctgatctcgtaagaattttgtcttgaatgaggcgccaagcaaaaagagaaa 690  Q
    |||||||| ||  |||| || |||||||||||| | || ||  |||| | |||||| ||  ||||| | ||||||| ||  |||||||| |||| |||||    
T  8752016 ccaacacagaagttgtcgtttggttgaagaacatgtcgacgaaccaggtttgatctagttggaattctatcttgaaggacacgccaagcgaaaaaagaaa 8751917  T
Q  691 cctttgtcggaaccactttgtgccacacatcaataactgcaccatcagccacctgttcgtcaatagttgttaggaaatgataagttccgcgaaccgagta 790  Q
    | || |||||||||| |||||||||||||||  | | || |||| || | |||||| | || |  |||||||||||| |||| || || | | |||||||    
T  8751916 ctttagtcggaaccagtttgtgccacacatctttgattgaaccaacaactacctgtacttctaatgttgttaggaaacgatacgtcccactagccgagta 8751817  T
Q  791 gccatggacaagatcaagtaaccaccgccaatggtccttagtataaacctacaaaacaacgttttccaacaaagtgacaca 871  Q
    ||||||   | ||||||||||||| || |||||||||| ||| | ||||| ||||| |||||||||||||||||| |||||    
T  8751816 gccatgattaggatcaagtaaccaacgtcaatggtcctgagtgttaacctgcaaaataacgttttccaacaaagtaacaca 8751736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 203 - 415
Target Start/End: Complemental strand, 17263331 - 17263119
Alignment:
Q  203 aaattacatgatacccatacataggagtggatgtctccaccaatcgtgaaaatcaaaagcaacaggcacaaagtttgaagatagtcacaagaaggaattt 302  Q
    ||||||||||| | ||||| | |||||||| |||||||||||||| || ||| |||||| || ||| |||   || |||||||  || || ||||||||     
T  17263331 aaattacatgacatccatataaaggagtgggtgtctccaccaatcatggaaaccaaaagaaaaaggaacattattcgaagataaccataaaaaggaattc 17263232  T
Q  303 agctttactttatcaacaatacggtgaggatcaataaccgtatctgtgaagactcggttgtttctctccttccatatagcccaaacacacgcaagccaaa 402  Q
    | ||| ||||| |||| || || ||||||||| || |||| || | | || || | ||||||||| ||||||||||| |||||| |||| ||||||||||    
T  17263231 aacttcactttttcaagaacactgtgaggatcgattaccgcattttttaatacacagttgtttctatccttccatattgcccaagcacaagcaagccaaa 17263132  T
Q  403 caaccttcaaata 415  Q
      ||||| |||||    
T  17263131 tgaccttaaaata 17263119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 203 - 409
Target Start/End: Original strand, 22358829 - 22359035
Alignment:
Q  203 aaattacatgatacccatacataggagtggatgtctccaccaatcgtgaaaatcaaaagcaacaggcacaaagtttgaagatagtcacaagaaggaattt 302  Q
    ||||||||||| | ||||||| | |||||| |||| ||||||||| |||||| | || || | ||| ||||| || ||||| || || || ||||| ||     
T  22358829 aaattacatgacatccatacaaacgagtgggtgtcgccaccaatcatgaaaacctaacgctataggaacaaaattcgaagaaagccataaaaaggagttc 22358928  T
Q  303 agctttactttatcaacaatacggtgaggatcaataaccgtatctgtgaagactcggttgtttctctccttccatatagcccaaacacacgcaagccaaa 402  Q
    ||||| ||||| |||||||||| |  |||||||||||||     | |||||||   |||||||||||| || || || ||||||| ||| ||||||||||    
T  22358929 agcttcactttttcaacaatactgaaaggatcaataaccacgcttttgaagacatagttgtttctctcttttcaaattgcccaaatacaagcaagccaaa 22359028  T
Q  403 caacctt 409  Q
     ||||||    
T  22359029 taacctt 22359035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 3092009 - 3091954
Alignment:
Q  111 aaggtgtgctaaagtgatgaatcacctaatgtctgttacatcatcacgacacctaa 166  Q
    ||||||| |||||||||||||||||||||| ||||||||| || ||| ||||||||    
T  3092009 aaggtgtactaaagtgatgaatcacctaatatctgttacaacaccacaacacctaa 3091954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 104 - 221
Target Start/End: Complemental strand, 21120617 - 21120501
Alignment:
Q  104 cccgtacaaggtgtgctaaagtgatgaatcacctaatgtctgttacatcatcacgacacctaaaacagatgtcatcacaactaaaaataaagca-taaac 202  Q
    |||| |||||||||||||||||||||||||  ||||| ||||||||| || ||   ||||||| | ||||| || ||||  |||| ||||||||  ||||    
T  21120617 cccgcacaaggtgtgctaaagtgatgaatcctctaatatctgttacaacaccaaagcacctaataaagatgccaccaca--taaacataaagcaccaaac 21120520  T
Q  203 aaattacatgatacccata 221  Q
    ||||||||||| |||||||    
T  21120519 aaattacatgacacccata 21120501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 259
Target Start/End: Original strand, 13428100 - 13428156
Alignment:
Q  203 aaattacatgatacccatacataggagtggatgtctccaccaatcgtgaaaatcaaa 259  Q
    ||||||||||||||||||||| |  ||||||| || ||||||||| |||||||||||    
T  13428100 aaattacatgatacccatacaaaaaagtggatatcgccaccaatcatgaaaatcaaa 13428156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 150
Target Start/End: Original strand, 13427999 - 13428040
Alignment:
Q  109 acaaggtgtgctaaagtgatgaatcacctaatgtctgttaca 150  Q
    |||||||||| ||||||||||||||||| || ||||||||||    
T  13427999 acaaggtgtgttaaagtgatgaatcacccaacgtctgttaca 13428040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 111 - 828
Target Start/End: Complemental strand, 9018087 - 9017369
Alignment:
Q  111 aaggtgtgctaaagtgatgaatcacctaatgtctgttacatcatcacgacacctaaaacagatgtcatcacaactaaaaataaagcat-aaacaaattac 209  Q
    |||||||||||||||||||||||||||||| ||||||||| || ||| | |||||| | ||||| || ||   ||||||||||||||  |||||||||||    
T  9018087 aaggtgtgctaaagtgatgaatcacctaatatctgttacaacaccacaaaacctaataaagatgccaccat--ctaaaaataaagcaccaaacaaattac 9017990  T
Q  210 atgatacccatacatag-----gagtggatgtctccaccaatcgtgaaaatcaaaagcaacaggcacaaagtttgaagatagtcacaagaaggaatttag 304  Q
    |||||||||||||| ||     ||||||||||||||||||||    |||| ||||||||| |||| ||||||| || ||||| || | ||| |||||||     
T  9017989 atgatacccatacaaagctaaggagtggatgtctccaccaata---aaaaccaaaagcaataggctcaaagttcgaggatagccaaaggaaagaatttaa 9017893  T
Q  305 ctttactttatcaacaatacggtgaggatcaataaccgtatctgtgaagactcggttgtttctctccttccatatagcccaaacacacgcaagccaaaca 404  Q
    ||||||||| |||||||||| |  | |||||||||||||||| ||||| |||||||||||||||||||||||||  ||||||||||| |||||||||| |    
T  9017892 ctttactttttcaacaatacagaaatgatcaataaccgtatcagtgaaaactcggttgtttctctccttccataatgcccaaacacaagcaagccaaata 9017793  T
Q  405 accttcaaatacaaatgtgtagatcgcggtaaccctgccaaatgaacaaactaagtgtaatgatccttaatgctacctgggggaacaaaatagaacccaa 504  Q
    ||||| | ||| || ||||||| |||||| || || ||||| |||| |||||  | |||||||||||||| |  |||||| ||||||||| | |||||||    
T  9017792 accttaagataaaagtgtgtaggtcgcggcaaacccgccaagtgaataaactgtgagtaatgatccttaacggaacctggaggaacaaaagaaaacccaa 9017693  T
Q  505 gccattgacagagtaaaatccaaaccattctaaacgattcacaaccaatgaagagatgatccgttgtttttatcaaatcgcatcctccaacacataaact 604  Q
    |||| ||||| | ||||  ||| ||  ||| ||| ||||| || || ||||||||||||||||| |||| ||| | | | |||||||||||||||||| |    
T  9017692 gccaatgacaaactaaataccagacacttccaaatgattcgcatcctatgaagagatgatccgtcgtttctattagaccacatcctccaacacataaatt 9017593  T
Q  605 gtcattaggttgaagaacacgacgtcgcgccagatctgatctcgtaagaattttgtcttgaatgaggcgccaagcaaaaagagaaacctttgtcggaacc 704  Q
    ||| || ||||| |||||| |||| ||| |||| | |||||||||| ||||| ||||||||| ||| |||||| ||||||| ||||| ||||||||||||    
T  9017592 gtcgtttggttgtagaacatgacgacgcaccaggtttgatctcgtaggaattctgtcttgaaggagacgccaaacaaaaagtgaaacttttgtcggaacc 9017493  T
Q  705 actttgtgccacacatcaataactgcaccatcagccacctgttcgtcaatagttgttaggaaatgataagttccgcgaaccgagtagccatggacaagat 804  Q
    | |||||||||||||||||||| || |||||| ||||||| ||| ||| ||||||| || | | ||||||| || | ||||| |||||||||||||||||    
T  9017492 aatttgtgccacacatcaataattgtaccatcggccacctattcttcattagttgtgagaatacgataagtcccacaaaccgtgtagccatggacaagat 9017393  T
Q  805 caagtaaccaccgccaatggtcct 828  Q
    | |||||||||| |||||||||||    
T  9017392 ctagtaaccaccaccaatggtcct 9017369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 231 - 874
Target Start/End: Complemental strand, 21313701 - 21313058
Alignment:
Q  231 ggatgtctccaccaatcgtgaaaatcaaaagcaacaggcacaaagtttgaagatagtcacaagaaggaatttagctttactttatcaacaatacggtgag 330  Q
    ||||||||||||||||||| |||  ||||||||| |||| |||  |||||||| || || |  || ||||||| ||| ||||| || |||||| |         
T  21313701 ggatgtctccaccaatcgtaaaagccaaaagcaataggctcaatatttgaagaaagccagagaaaagaatttaacttaactttttcgacaatatgtaaca 21313602  T
Q  331 gatcaataaccgtatctgtgaagactcggttgtttctctccttccatatagcccaaacacacgcaagccaaacaaccttcaaatacaaatgtgtagatcg 430  Q
    |||||||||| |||||  |||| || | |||||||| |||||||||||| ||||||||||| |||||||||| |||||| ||| ||| ||| |||||||     
T  21313601 gatcaataactgtatcattgaaaacacagttgtttcgctccttccatattgcccaaacacaagcaagccaaataaccttaaaaaacacatgagtagatct 21313502  T
Q  431 cggtaaccctgccaaatgaacaaactaagtgtaatgatccttaatgctacctgggggaacaaaatagaacccaagccattgacagagtaaaatccaaacc 530  Q
     || || || |||||||||  ||||| | |||||||||||||| |   |||||| ||||||||| | ||||||||||||||||| ||||||| ||| ||     
T  21313501 aggcaaacccgccaaatgagtaaactgactgtaatgatccttagtagaacctggaggaacaaaagaaaacccaagccattgacaaagtaaaacccagaca 21313402  T
Q  531 attctaaacgattcacaaccaatgaagagatgatccgttgtttttatcaaatcgcatcctccaacacataaactgtcattaggttgaagaacacgacgtc 630  Q
     ||| |||   ||| || ||||| || |||||| |||| ||||     |   | || ||||||||||| ||| |||| || |||||||| |   |||| |    
T  21313401 cttccaaaaagttcgcatccaataaaaagatgacccgtcgtttcggatagtccacaccctccaacacaaaaattgtcgtttggttgaaggatgagacgac 21313302  T
Q  631 gcgccagatctgatctcgtaagaattttgtcttgaatgaggcgccaagcaaaaagagaaacctttgtcggaaccactttgtgccacacatcaataactgc 730  Q
     | ||| || || ||| ||| ||||| | |||||||  |  |||||||||||||| || || |||||||| |||| |||||||||||| |||||||   |    
T  21313301 acaccaaatttgctcttgtaggaattctatcttgaagcaaccgccaagcaaaaagcgacacttttgtcgggaccaatttgtgccacacgtcaataaaaac 21313202  T
Q  731 accatcagccacctgttcgtcaatagttgttaggaaatgataagttccgcgaaccgagtagccatggacaagatcaagtaaccaccgccaatggtcctta 830  Q
    | ||| |||||||||||| |||  | |||| || ||| ||||||| || | |||    || ||||| ||| |||| ||||||||||||||| |||||| |    
T  21313201 atcattagccacctgttcttcagaatttgtgagaaaacgataagtcccaccaacactataaccatgaacaggatcgagtaaccaccgccaacggtcctga 21313102  T
Q  831 gtataaacctacaaaacaacgttttccaacaaagtgacacactc 874  Q
     ||| ||||| |||||||||||| ||||  ||||||| ||||||    
T  21313101 atatgaacctgcaaaacaacgttatccagtaaagtgatacactc 21313058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 234 - 726
Target Start/End: Original strand, 8304788 - 8305280
Alignment:
Q  234 tgtctccaccaatcgtgaaaatcaaaagcaacaggcacaaagtttgaagatagtcacaagaaggaatttagctttactttatcaacaatacggtgaggat 333  Q
    |||||||||||||||| |||  |||||| || |||| |||  || |||||||| || |  || ||||||| ||| ||||| ||||||||| |    ||||    
T  8304788 tgtctccaccaatcgtaaaagccaaaagaaataggctcaacattcgaagatagccagagaaaagaatttaacttaactttttcaacaatatgtaacggat 8304887  T
Q  334 caataaccgtatctgtgaagactcggttgtttctctccttccatatagcccaaacacacgcaagccaaacaaccttcaaatacaaatgtgtagatcgcgg 433  Q
    |||||| |||||| | |||||| ||||||||||||||||||||||| ||||||||||| |||||||||| |||||| ||| |||  || |||||||  ||    
T  8304888 caataatcgtatcagagaagacacggttgtttctctccttccatattgcccaaacacaagcaagccaaataaccttaaaaaacacgtgagtagatctagg 8304987  T
Q  434 taaccctgccaaatgaacaaactaagtgtaatgatccttaatgctacctgggggaacaaaatagaacccaagccattgacagagtaaaatccaaaccatt 533  Q
     || |  ||||| |||  ||||| | | ||||||||||||||   |||||| | ||||||| | |||||||| || ||||| ||||||| ||| ||  ||    
T  8304988 caaactcgccaagtgagtaaactgaatataatgatccttaatagaacctggagaaacaaaagaaaacccaagtcagtgacaaagtaaaacccagactctt 8305087  T
Q  534 ctaaacgattcacaaccaatgaagagatgatccgttgtttttatcaaatcgcatcctccaacacataaactgtcattaggttgaagaacacgacgtcgcg 633  Q
    | ||| ||||| || ||||||||||||||| | || |||| |   ||| | || ||||||||||| | |||||| || ||||||||||   |||| | |     
T  8305088 ccaaaagattcgcatccaatgaagagatgacctgtcgtttctgataaaccacaccctccaacacacacactgtcgtttggttgaagaatgagacgacaca 8305187  T
Q  634 ccagatctgatctcgtaagaattttgtcttgaatgaggcgccaagcaaaaagagaaacctttgtcggaaccactttgtgccacacatcaataa 726  Q
    ||| || || ||| ||| ||||| ||||||| |  |  |||||||||||||  || || ||| ||||||| | ||||||||||||||||||||    
T  8305188 ccaaatttgctcttgtaggaattatgtcttgtagcatccgccaagcaaaaaacgacacttttttcggaactaatttgtgccacacatcaataa 8305280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 291 - 458
Target Start/End: Original strand, 20877434 - 20877601
Alignment:
Q  291 aagaaggaatttagctttactttatcaacaatacggtgaggatcaataaccgtatctgtgaagactcggttgtttctctccttccatatagcccaaacac 390  Q
    ||||||||||| ||||| ||||| || ||||||  |||||||||||||||| | |||||||||||||||||||||||||||||||| || ||||||||||    
T  20877434 aagaaggaattaagcttcactttttctacaatattgtgaggatcaataaccatttctgtgaagactcggttgtttctctccttccaaattgcccaaacac 20877533  T
Q  391 acgcaagccaaacaaccttcaaatacaaatgtgtagatcgcggtaaccctgccaaatgaacaaactaa 458  Q
    | ||||||||||  ||||| ||||| || || || |||| |||||| || |||| ||||| |||||||    
T  20877534 aagcaagccaaattaccttaaaataaaattgagttgatctcggtaatcccgccatatgaataaactaa 20877601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 203 - 474
Target Start/End: Complemental strand, 29934623 - 29934352
Alignment:
Q  203 aaattacatgatacccatacataggagtggatgtctccaccaatcgtgaaaatcaaaagcaacaggcacaaagtttgaagatagtcacaagaaggaattt 302  Q
    |||||||||||||||||||||  | ||||| | ||||||||||||||| ||  |||| | || ||||||||  ||||| || || || || || |||||     
T  29934623 aaattacatgatacccatacaaggtagtgggtatctccaccaatcgtggaagccaaacgaaagaggcacaacatttgacgaaagccataaaaaagaattc 29934524  T
Q  303 agctttactttatcaacaatacggtgaggatcaataaccgtatctgtgaagactcggttgtttctctccttccatatagcccaaacacacgcaagccaaa 402  Q
    | ||| || || || |||||||   |||||||||||||| |||   | ||||| |  || ||||||||||||||||| ||||||| ||||||   |||||    
T  29934523 aacttcaccttttctacaatactaagaggatcaataaccttattgttaaagacacaattatttctctccttccatattgcccaaatacacgcctaccaaa 29934424  T
Q  403 caaccttcaaatacaaatgtgtagatcgcggtaaccctgccaaatgaacaaactaagtgtaatgatccttaa 474  Q
     ||| |||||||| ||||| ||||||||||| || || |||||||||| ||||| || | |||| |||||||    
T  29934423 taactttcaaataaaaatgagtagatcgcggcaaacccgccaaatgaataaactgagagaaatgttccttaa 29934352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 203 - 264
Target Start/End: Complemental strand, 15172745 - 15172684
Alignment:
Q  203 aaattacatgatacccatacataggagtggatgtctccaccaatcgtgaaaatcaaaagcaa 264  Q
    ||||||||||| ||||||||| |||||||| |||||||| |||||||||||| |||||||||    
T  15172745 aaattacatgacacccatacaaaggagtgggtgtctccatcaatcgtgaaaaacaaaagcaa 15172684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 39143347 - 39143299
Alignment:
Q  102 accccgtacaaggtgtgctaaagtgatgaatcacctaatgtctgttaca 150  Q
    |||||| |||||||||| ||||||||||||||||||||| |||||||||    
T  39143347 accccgcacaaggtgtggtaaagtgatgaatcacctaatatctgttaca 39143299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 168
Target Start/End: Complemental strand, 21313827 - 21313761
Alignment:
Q  102 accccgtacaaggtgtgctaaagtgatgaatcacctaatgtctgttacatcatcacgacacctaaaa 168  Q
    |||||||||||||||||||||| |||||||||| |||   ||||||||| || |||| |||||||||    
T  21313827 accccgtacaaggtgtgctaaaatgatgaatcatctagaatctgttacaacaccacggcacctaaaa 21313761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 150
Target Start/End: Original strand, 39919347 - 39919388
Alignment:
Q  109 acaaggtgtgctaaagtgatgaatcacctaatgtctgttaca 150  Q
    ||||||||||||||| |||||||||||| |||||||||||||    
T  39919347 acaaggtgtgctaaaatgatgaatcacccaatgtctgttaca 39919388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 675 - 814
Target Start/End: Original strand, 20877818 - 20877956
Alignment:
Q  675 caagcaaaaagagaaacctttgtcggaaccactttgtgccacacatcaataactgcaccatcagccacctgttcgtcaatagttgttaggaaatgataag 774  Q
    ||||| ||||||||||| || |||||||||  |||||||||||||||  | | || |||| |||| |||||||  | ||| |||||||||||| |||| |    
T  20877818 caagcgaaaagagaaactttagtcggaaccggtttgtgccacacatctttgattgaaccaacagctacctgttgtttaat-gttgttaggaaaggatacg 20877916  T
Q  775 ttccgcgaaccgagtagccatggacaagatcaagtaacca 814  Q
    | || | |||| || ||||||| | | |||||||||||||    
T  20877917 tcccactaaccaagcagccatgaataggatcaagtaacca 20877956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 810 - 871
Target Start/End: Original strand, 20879850 - 20879911
Alignment:
Q  810 aaccaccgccaatggtccttagtataaacctacaaaacaacgttttccaacaaagtgacaca 871  Q
    ||||| ||||||||||| | ||| | ||||| ||||||| |||||||||||||||| |||||    
T  20879850 aaccaacgccaatggtcttgagtgttaacctgcaaaacagcgttttccaacaaagtaacaca 20879911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 160; Significance: 9e-85; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 160; E-Value: 9e-85
Query Start/End: Original strand, 102 - 726
Target Start/End: Original strand, 16423239 - 16423862
Alignment:
Q  102 accccgtacaaggtgtgctaaagtgatgaatcacctaatgtctgttacatcatcacgacacctaaaacagatgtcatcacaactaaaaataaagcat-aa 200  Q
    |||||| |||||||||  |||| ||||||| ||| |||| ||||||||| || |||  ||||||| | ||||| || | |  ||||||||||||||  ||    
T  16423239 accccgcacaaggtgttttaaactgatgaaacacgtaatatctgttacaacaccacatcacctaataaagatgccaccgc--ctaaaaataaagcaccaa 16423336  T
Q  201 acaaattacatgatacccatacataggagtggatgtctccaccaatcgtgaaaatcaaaagcaacaggcacaaagtttgaagatagtcacaagaaggaat 300  Q
    ||||||||||||| ||||||||| |  |||||||||||||||| |||||||||||||||||||| |||| ||||||| |||||||| |  | ||| ||||    
T  16423337 acaaattacatgacacccatacaaaaaagtggatgtctccaccgatcgtgaaaatcaaaagcaataggctcaaagttcgaagatagccgtaggaaagaat 16423436  T
Q  301 ttagctttactttatcaacaatacggtgaggatcaataaccgtatctgtgaagactcggttgtttctctccttccatatagcccaaacacacgcaagcca 400  Q
    ||| ||||||||| ||||||||| ||  | |||||||||||||||| ||||| ||||||||||||| | |||||||||| ||||||||||| ||||||||    
T  16423437 ttaactttactttttcaacaatatggaaatgatcaataaccgtatcagtgaaaactcggttgtttcgcaccttccatattgcccaaacacaagcaagcca 16423536  T
Q  401 aacaaccttcaaatacaaatgtgtagatcgcggtaaccctgccaaatgaacaaactaagtgtaatgatccttaatgctacctgggggaacaaaatagaac 500  Q
    || |||||| | |||||| || |||||||| || || || |||||||||| ||||| |  ||||||||||||| ||  |||||| ||||||||  | |||    
T  16423537 aataaccttaagatacaagtgagtagatcgtggcaaacccgccaaatgaataaactgatagtaatgatccttattggaacctggaggaacaaaggaaaac 16423636  T
Q  501 ccaagccattgacagagtaaaatccaaaccattctaaacgattcacaaccaatgaagagatgatccgttgtttttatcaaatcgcatcctccaacacata 600  Q
    |||||||  ||||| ||||||| ||| ||  ||| ||  ||||| || || ||||||||||||  | | |||| ||| | | | ||||||||||||||||    
T  16423637 ccaagcctgtgacaaagtaaaacccagacacttccaacagattcgcatcctatgaagagatgactcatcgtttctattagaccacatcctccaacacata 16423736  T
Q  601 aactgtcattaggttgaagaacacgacgtcgcgccagatctga-tctcgtaagaattttgtcttgaatgaggcgccaagcaaaaagagaaacctttgtcg 699  Q
    || | || || |||||||||    || | ||| |||| | ||| ||| ||| ||||| ||||||| | ||| |||||| ||||||| ||||| |||| ||    
T  16423737 aattttcgtttggttgaagagtttgatgacgcaccaggt-tgactcttgtaggaattctgtcttgtaggagccgccaaacaaaaagcgaaacttttggcg 16423835  T
Q  700 gaaccactttgtgccacacatcaataa 726  Q
    |||||| ||||||||| ||||||||||    
T  16423836 gaaccaatttgtgccatacatcaataa 16423862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 199 - 650
Target Start/End: Original strand, 8303892 - 8304343
Alignment:
Q  199 aaacaaattacatgatacccatacataggagtggatgtctccaccaatcgtgaaaatcaaaagcaacaggcacaaagtttgaagatagtcacaagaagga 298  Q
    ||||| ||||||||| | ||||| | ||||||||||||||||||||||| |||||| ||||||| |   ||||| |||| |||||||| || | ||||||    
T  8303892 aaacacattacatgacatccatataaaggagtggatgtctccaccaatcatgaaaaccaaaagctattagcacatagttcgaagatagccaaacgaagga 8303991  T
Q  299 atttagctttactttatcaacaatacggtgaggatcaataaccgtatctgtgaagactcggttgtttctctccttccatatagcccaaacacacgcaagc 398  Q
    ||||| ||||||||| || || |||||| ||||||| ||||||||||||||||| |||| ||||| ||||||||| || || ||||||||||| ||||||    
T  8303992 atttaactttactttttcgaccatacggagaggatcgataaccgtatctgtgaaaactcagttgtatctctccttgcaaattgcccaaacacaagcaagc 8304091  T
Q  399 caaacaaccttcaaatacaaatgtgtagatcgcggtaaccctgccaaatgaacaaactaagtgtaatgatccttaatgctacctgggggaacaaaataga 498  Q
    ||||  ||||| | ||| || || ||||||  ||| ||||| ||||| |||  ||||| || ||||||||| |||||   |||||| |  |||||| | |    
T  8304092 caaatgacctttagataaaagtgagtagatttcggcaaccccgccaattgagtaaactgagagtaatgatctttaatataacctggagatacaaaagaaa 8304191  T
Q  499 acccaagccattgacagagtaaaatccaaaccattctaaacgattcacaaccaatgaagagatgatccgttgtttttatcaaatcgcatcctccaacaca 598  Q
      |||||||| ||||| | ||||| ||| ||  ||| ||| |||||||| || ||||| |||||| |||| |||| ||| ||  | | | || |||||||    
T  8304192 cgccaagccaatgacatactaaaaaccacacacttccaaaagattcacatcctatgaaaagatgaaccgtcgtttctattaacccacgtgcttcaacaca 8304291  T
Q  599 taaactgtcattaggttgaagaacacgacgtcgcgccagatctgatctcgta 650  Q
    |||| | || || |||||||||||| | |||||| |||| | ||||||||||    
T  8304292 taaattttcgtttggttgaagaacatgtcgtcgcaccaggtttgatctcgta 8304343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 203 - 264
Target Start/End: Original strand, 12527082 - 12527143
Alignment:
Q  203 aaattacatgatacccatacataggagtggatgtctccaccaatcgtgaaaatcaaaagcaa 264  Q
    ||||||||||| ||||||||| || ||||| |||||| ||||||| ||||||||||||||||    
T  12527082 aaattacatgacacccatacacagaagtgggtgtctcgaccaatcatgaaaatcaaaagcaa 12527143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 203 - 261
Target Start/End: Original strand, 33567291 - 33567349
Alignment:
Q  203 aaattacatgatacccatacataggagtggatgtctccaccaatcgtgaaaatcaaaag 261  Q
    |||||||||||   ||||||| ||||||||||||||||||||||| |||||| ||||||    
T  33567291 aaattacatgacgtccatacaaaggagtggatgtctccaccaatcatgaaaaccaaaag 33567349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 139; Significance: 3e-72; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 106 - 308
Target Start/End: Complemental strand, 52762959 - 52762757
Alignment:
Q  106 cgtacaaggtgtgctaaagtgatgaatcacctaatgtctgttacatcatcacgacacctaaaacagatgtcatcacaactaaaaataaagcataaacaaa 205  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||| |||| ||||||| |||||||||||||| ||||||||||||| | | |||||    
T  52762959 cgtacaaggtgtgttaaagtgatgaatcacctaatgtctgtcacatcaacacggcacctaatacagatgtcatcaccactaaaaataaagtacagacaaa 52762860  T
Q  206 ttacatgatacccatacataggagtggatgtctccaccaatcgtgaaaatcaaaagcaacaggcacaaagtttgaagatagtcacaagaaggaatttagc 305  Q
    |||||||| ||||| ||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| || |||||||||||||||    
T  52762859 ttacatgacacccaaacatatgagtggatgtctccaccaatcttgaaaaccaaaagcaacaggcacaaagtttgaagatagccataagaaggaatttagc 52762760  T
Q  306 ttt 308  Q
    |||    
T  52762759 ttt 52762757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 102 - 563
Target Start/End: Original strand, 17712716 - 17713180
Alignment:
Q  102 accccgtacaaggtgtgctaaagtgatgaatcacctaatgtctgttacatcatcacgacacctaaaac---agatgtcatcacaactaaaaataaagcat 198  Q
    |||||| |||||||||||||||||||||||||  ||||| ||||||||| || |||  |||||||||    ||||| || |||  ||||| |||||  |     
T  17712716 accccgcacaaggtgtgctaaagtgatgaatcctctaatatctgttacaacaccacatcacctaaaaataaagatgccaccac--ctaaacataaaagac 17712813  T
Q  199 --aaacaaattacatgatacccatacataggagtggatgtctccaccaatcgtgaaaatcaaaagcaacaggcacaaagtttgaagatagtcacaagaag 296  Q
      |||||| ||| || | |||||||||    || ||||||||||||||||||| |||  |||||| || |||| |||  || |||||||| || |  ||     
T  17712814 gaaaacaacttaaatcacacccatacaataaaggggatgtctccaccaatcgtaaaagccaaaagaaataggctcaagattcgaagatagccagagaaaa 17712913  T
Q  297 gaatttagctttactttatcaacaatacggtgaggatcaataaccgtatctgtgaagactcggttgtttctctccttccatatagcccaaacacacgcaa 396  Q
    ||||||| ||| ||||| ||||||||| |     ||||||||||||||||   ||| || ||||||||||||||||||||||| ||||||||||| ||||    
T  17712914 gaatttaacttaactttttcaacaatatgtaacagatcaataaccgtatcatagaaaacacggttgtttctctccttccatattgcccaaacacaagcaa 17713013  T
Q  397 gccaaacaaccttcaaatacaaatgtgtagatcgcggtaaccctgccaaatgaacaaactaagtgtaatgatccttaatgctacctgggggaacaaaata 496  Q
    |||||| |||||| ||| |||  || |||||||  || || || ||||| |||  ||||| | ||||||| ||||||||   ||||||  |||||||| |    
T  17713014 gccaaataaccttaaaaaacacgtgagtagatctaggcaaacccgccaagtgagtaaactgaatgtaatggtccttaatagaacctggatgaacaaaaga 17713113  T
Q  497 gaacccaagccattgacagagtaaaatccaaaccattctaaacgattcacaaccaatgaagagatga 563  Q
     ||||||||||| ||||| ||||| | ||| ||  ||| ||| ||||| ||||||||||||||||||    
T  17713114 aaacccaagccagtgacaaagtaagacccagactcttccaaaagattcgcaaccaatgaagagatga 17713180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 203 - 402
Target Start/End: Original strand, 22322555 - 22322754
Alignment:
Q  203 aaattacatgatacccatacataggagtggatgtctccaccaatcgtgaaaatcaaaagcaacaggcacaaagtttgaagatagtcacaagaaggaattt 302  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||| | ||  || ||||| || ||||| || || || ||||||||     
T  22322555 aaattacatgatacccatacaaaggagtgggtgtctccaccaatcgtgaaaaccaaacgaaattggtacaaaattcgaagagagccataaaaaggaattc 22322654  T
Q  303 agctttactttatcaacaatacggtgaggatcaataaccgtatctgtgaagactcggttgtttctctccttccatatagcccaaacacacgcaagccaaa 402  Q
    | ||| ||||| |||||||||| | ||||||||||||||| || | |||||||    ||||||||||||||||| || ||||||| ||| ||||||||||    
T  22322655 aacttcactttttcaacaataccgagaggatcaataaccgcatttttgaagacataattgtttctctccttccaaattgcccaaatacaagcaagccaaa 22322754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 579 - 828
Target Start/End: Original strand, 22322931 - 22323180
Alignment:
Q  579 aaatcgcatcctccaacacataaactgtcattaggttgaagaacacgacgtcgcgccagatctgatctcgtaagaattttgtcttgaatgaggcgccaag 678  Q
    ||||| ||||| |||||||||||  ||||  ||||||| | |||| | || ||| ||| || |||||| ||  ||||| | ||||||| ||| ||||||     
T  22322931 aaatcacatccaccaacacataagttgtcgataggttggaaaacatgtcgacgcaccaaatttgatcttgttggaattctatcttgaaggagacgccaat 22323030  T
Q  679 caaaaagagaaacctttgtcggaaccactttgtgccacacatcaataactgcaccatcagccacctgttcgtcaatagttgttaggaaatgataagttcc 778  Q
    |||| | ||| || ||||| ||||| | |||||||||||||| | ||||   |||||||||||||||||| || ||||| ||||||||| ||||||| ||    
T  22323031 caaacaaagatacttttgtaggaactagtttgtgccacacattattaaccaaaccatcagccacctgttcatctatagtggttaggaaacgataagtccc 22323130  T
Q  779 gcgaaccgagtagccatggacaagatcaagtaaccaccgccaatggtcct 828  Q
     | |||| | |||||||| |  |||||||| |||||||||||||||||||    
T  22323131 actaacctaatagccatgaatcagatcaagcaaccaccgccaatggtcct 22323180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 228 - 370
Target Start/End: Complemental strand, 1463245 - 1463103
Alignment:
Q  228 agtggatgtctccaccaatcgtgaaaatcaaaagcaacaggcacaaagtttgaagatagtcacaagaaggaatttagctttactttatcaacaatacggt 327  Q
    ||||| |||| ||||||||| |||||| |||||| || ||| ||||| || ||||| |||||||| ||||||||  |||| ||||| |||||||||  |     
T  1463245 agtgggtgtcgccaccaatcatgaaaaccaaaagaaataggtacaaaattcgaagacagtcacaaaaaggaattctgcttcactttttcaacaatattga 1463146  T
Q  328 gaggatcaataaccgtatctgtgaagactcggttgtttctctc 370  Q
    ||||||||||| ||| || | ||||||| ||||||||||||||    
T  1463145 gaggatcaatacccgcatttttgaagacacggttgtttctctc 1463103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 363 - 420
Target Start/End: Complemental strand, 39868099 - 39868042
Alignment:
Q  363 tttctctccttccatatagcccaaacacacgcaagccaaacaaccttcaaatacaaat 420  Q
    ||||||||||||||||| ||||| ||||| |||||||||| |||||| ||||||||||    
T  39868099 tttctctccttccatattgcccatacacaggcaagccaaataaccttaaaatacaaat 39868042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 363 - 447
Target Start/End: Complemental strand, 28067992 - 28067908
Alignment:
Q  363 tttctctccttccatatagcccaaacacacgcaagccaaacaaccttcaaatacaaatgtgtagatcgcggtaaccctgccaaat 447  Q
    |||||||||||||| ||||||||||||| ||| ||||||| || |||||||||  |||| | | |||||||||| || |||||||    
T  28067992 tttctctccttccaaatagcccaaacactcgccagccaaataatcttcaaataagaatgggaaaatcgcggtaaacccgccaaat 28067908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 150
Target Start/End: Original strand, 42396736 - 42396788
Alignment:
Q  98 atttaccccgtacaaggtgtgctaaagtgatgaatcacctaatgtctgttaca 150  Q
    |||||||||| ||||||| ||||||||||||||| |||| |||||||||||||    
T  42396736 atttaccccgcacaaggtatgctaaagtgatgaaacacccaatgtctgttaca 42396788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 264
Target Start/End: Original strand, 135987 - 136048
Alignment:
Q  203 aaattacatgatacccatacataggagtggatgtctccaccaatcgtgaaaatcaaaagcaa 264  Q
    ||||||||||| ||||||||| || | |||||||||||||||||| |||||  |||||||||    
T  135987 aaattacatgacacccatacacagaattggatgtctccaccaatcatgaaagccaaaagcaa 136048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 331 - 456
Target Start/End: Complemental strand, 11821305 - 11821180
Alignment:
Q  331 gatcaataaccgtatctgtgaagactcggttgtttctctccttccatatagcccaaacacacgcaagccaaacaaccttcaaatacaaatgtgtagatcg 430  Q
    ||||||| ||||||| | ||||||  | ||| ||||||||||| ||||| ||||| ||||| |||||||||| |||| | | |||  |||||| ||||||    
T  11821305 gatcaattaccgtatttttgaagatacagttatttctctcctttcatattgcccatacacaagcaagccaaataaccgtaagataagaatgtgaagatcg 11821206  T
Q  431 cggtaaccctgccaaatgaacaaact 456  Q
     ||||| ||  ||||||||| |||||    
T  11821205 tggtaaacccaccaaatgaataaact 11821180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 205 - 261
Target Start/End: Original strand, 2632897 - 2632953
Alignment:
Q  205 attacatgatacccatacataggagtggatgtctccaccaatcgtgaaaatcaaaag 261  Q
    ||||||| ||||||||||| || ||||| |||||||| |||||||||||| ||||||    
T  2632897 attacataatacccatacaaagaagtgggtgtctccatcaatcgtgaaaaccaaaag 2632953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 363 - 409
Target Start/End: Complemental strand, 17186045 - 17185999
Alignment:
Q  363 tttctctccttccatatagcccaaacacacgcaagccaaacaacctt 409  Q
    ||||||||||||||||| ||||| ||||| |||||||||| ||||||    
T  17186045 tttctctccttccatattgcccatacacaggcaagccaaataacctt 17185999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 363 - 409
Target Start/End: Original strand, 17187609 - 17187655
Alignment:
Q  363 tttctctccttccatatagcccaaacacacgcaagccaaacaacctt 409  Q
    ||||||||||||||||| ||||| ||||| |||||||||| ||||||    
T  17187609 tttctctccttccatattgcccatacacaggcaagccaaataacctt 17187655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 588 - 726
Target Start/End: Original strand, 17713205 - 17713343
Alignment:
Q  588 cctccaacacataaactgtcattaggttgaagaacacgacgtcgcgccagatctgatctcgtaagaattttgtcttgaatgaggcgccaagcaaaaagag 687  Q
    ||||||||||| ||| |||| || ||||||||||   |||| ||| ||| || || ||| ||| ||||| ||||||| |  |  |||||||||||| | |    
T  17713205 cctccaacacacaaattgtcgtttggttgaagaatgagacgacgcaccaaatttgctcttgtaggaattctgtcttgtagcaaccgccaagcaaaaggcg 17713304  T
Q  688 aaacctttgtcggaaccactttgtgccacacatcaataa 726  Q
    | || ||| ||||||||| ||||||| ||||||||||||    
T  17713305 acacttttttcggaaccaatttgtgctacacatcaataa 17713343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 337
Target Start/End: Original strand, 37014054 - 37014188
Alignment:
Q  203 aaattacatgatacccatacataggagtggatgtctccaccaatcgtgaaaatcaaaagcaacaggcacaaagtttgaagatagtcacaagaaggaattt 302  Q
    |||||||| || || |||||| || ||||| |||||||||||||| |||||| |||| ||||  |||||||| || || || |  || || ||||||||     
T  37014054 aaattacacgacactcatacaaagaagtgggtgtctccaccaatcatgaaaaccaaatgcaattggcacaaaattcgacgaaaaccataaaaaggaattc 37014153  T
Q  303 agctttactttatcaacaatacggtgaggatcaat 337  Q
    ||||| || || || ||||||  ||||||||||||    
T  37014154 agcttcaccttttcgacaatattgtgaggatcaat 37014188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 351 - 432
Target Start/End: Complemental strand, 21141713 - 21141632
Alignment:
Q  351 aagactcggttgtttctctccttccatatagcccaaacacacgcaagccaaacaaccttcaaatacaaatgtgtagatcgcg 432  Q
    ||||| ||||||||  | ||||||||||| |||||||||||  ||||||||| |||||| ||| |  |||||| ||||||||    
T  21141713 aagacgcggttgttcttttccttccatattgcccaaacacaatcaagccaaataacctttaaagatgaatgtgaagatcgcg 21141632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 130; Significance: 7e-67; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 130; E-Value: 7e-67
Query Start/End: Original strand, 102 - 573
Target Start/End: Complemental strand, 1585504 - 1585034
Alignment:
Q  102 accccgtacaaggtgtgctaaagtgatgaatcacctaatgtctgttacatcatcacgacacctaaaacagatgtcatcacaactaaaaataaagcat-aa 200  Q
    ||||||||||||||||||||||||||||||||  ||||| | ||||||| || |||  ||||||| | ||||| || |||  ||||| ||||||||  ||    
T  1585504 accccgtacaaggtgtgctaaagtgatgaatcctctaatatatgttacaacaccacatcacctaataaagatgccaccac--ctaaacataaagcaccaa 1585407  T
Q  201 acaaattacatgatacccatacataggagtggatgtctccaccaatcgtgaaaatcaaaagcaacaggcacaaagtttgaagatagtcacaagaaggaat 300  Q
    ||||||||||||| |||||||||    || |||||||||||||||||||||||| |||||||||  ||| ||||||| |||||||| || |  || ||||    
T  1585406 acaaattacatgacacccatacaataaaggggatgtctccaccaatcgtgaaaaccaaaagcaatgggctcaaagttcgaagatagccagagaaaagaat 1585307  T
Q  301 ttagctttactttatcaacaatacggtgaggatcaataaccgtatctgtgaagactcggttgtttctctccttccatatagcccaaacacacgcaagcca 400  Q
    ||| ||| ||||| |||||||||  |    |||||||||||||||| ||||| |||||  ||||||  ||||||||||| ||||||||||| ||||||||    
T  1585306 ttaacttaactttttcaacaatattgaacagatcaataaccgtatcagtgaaaactcgaatgtttcagtccttccatattgcccaaacacaagcaagcca 1585207  T
Q  401 aacaaccttcaaatacaaatgtgtagatcgcggtaaccctgccaaatgaacaaactaagtgtaatgatccttaatgctacctgggggaacaaaatagaac 500  Q
    || |||||| | |||||| || |||||||| || || || ||||| |||  ||||| |  ||||||||||||| |   |||||| ||||||||| | |||    
T  1585206 aataaccttaatatacaagtgagtagatcgtggcaaacccgccaagtgagtaaactgatagtaatgatccttactagaacctggaggaacaaaagaaaac 1585107  T
Q  501 ccaagccattgacagagtaaaatccaaaccattctaaacgattcacaaccaatgaagagatgatccgttgttt 573  Q
    |||||||| ||||| ||||||| ||| ||  ||| ||| ||||| || || ||||||||||||||||| ||||    
T  1585106 ccaagccagtgacaaagtaaaaaccagacacttccaaaagattcgcatccgatgaagagatgatccgtcgttt 1585034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 102 - 924
Target Start/End: Original strand, 17945918 - 17946749
Alignment:
Q  102 accccgtacaaggtgtgctaaagtgatgaatcacctaatgtctgttacatcatcacgacacctaaaaca--gatgtcatcacaactaaaaataaagcata 199  Q
    |||||| ||||||||||||||| |||||||||  ||||| ||||||||| || ||| |||||||||| |  |||| || |||  ||||| | ||||        
T  17945918 accccgcacaaggtgtgctaaaatgatgaatcctctaatatctgttacaacaccacaacacctaaaaaaaagatgccaccac--ctaaacaaaaaggtcc 17946015  T
Q  200 aacaaattacatgatacccatacataggagtggatgtctccaccaatcgtgaaaatcaaaagcaacaggcacaaagtttgaagatagtcacaagaaggaa 299  Q
    ||  | ||| || | ||||||||| |  || ||||||||||||||||||| |||  ||||||||| |||| |||  || ||||| || || |  || |||    
T  17946016 aaacacttaaatcacacccatacaaaaaaggggatgtctccaccaatcgtaaaagccaaaagcaataggctcaatattcgaagaaagccagagaaaagaa 17946115  T
Q  300 tttagctttactttatcaacaatacggtgaggatcaataaccgtatctgtgaagactcggttgtttctctccttccatatagcccaaacacacgcaagcc 399  Q
    |||| ||| ||||| || |||||| |    ||||||||||||||||   |||| || ||| |||||| |||||||||||| ||||||||||| |||||||    
T  17946116 tttaacttaactttttcgacaatatgtaacggatcaataaccgtattattgaaaacacggctgtttcgctccttccatattgcccaaacacaagcaagcc 17946215  T
Q  400 aaacaaccttcaaatacaaatgtgtagatcgcggtaaccctgccaaatgaacaaactaagtgtaatgatccttaatgctacctgggggaacaaaatagaa 499  Q
    ||  |||||| ||| ||| ||| |||||||  || || || |||||||||  ||||| | ||||||||||||||||   |||||| ||||||||| | ||    
T  17946216 aagtaaccttaaaaaacacatgagtagatctaggcaaacccgccaaatgagtaaactgaatgtaatgatccttaatagaacctggaggaacaaaaga-aa 17946314  T
Q  500 cccaagccattgacagagtaaaatccaaaccattctaaacgattcacaaccaatgaagagatgatccgttgtttttatcaaatcgcatcctccaacacat 599  Q
     |||||||| ||||| ||||||| ||| || |||| |||  ||||||  ||||||||||||||| || | ||||     | | | || ||||||||||||    
T  17946315 accaagccagtgacaaagtaaaacccagacaattccaaaatattcacctccaatgaagagatgacccatcgtttcggatagaccacaccctccaacacat 17946414  T
Q  600 aaactgtcattaggttgaagaacacgacgtcgcgccagatctgatctcgtaagaattttgtcttgaatgaggcgccaagcaaaaagagaaacctttgtcg 699  Q
    ||| |||| || ||||||||||   |||| ||| |||  | || ||| ||| ||||| |||||||||  |  |||||||||||||  || || |||||||    
T  17946415 aaattgtcgtttggttgaagaatgagacgacgcaccaagtttgctcttgtaggaattctgtcttgaaacaaccgccaagcaaaaaacgacacttttgtcg 17946514  T
Q  700 gaaccactttgtgccacacatcaataactgcaccatcagccacctgttcgtcaatagttgttaggaaatgataagttccgcgaaccgagtagccatggac 799  Q
    | |||| |||||||||||| |||||||  ||| ||| |||||||||||| |||  | |||| || ||| ||||||| || | |||    || ||||| ||    
T  17946515 ggaccaatttgtgccacacgtcaataaaagcatcattagccacctgttcttcagaatttgtgagaaaacgataagtcccaccaacactataaccatgaac 17946614  T
Q  800 aagatcaagtaaccaccgccaatggtccttagtataaacctacaaaacaacgttttccaacaaagtga----------cacactctcctcctcccaagcc 889  Q
    | |||| ||||||||||||||| |||||| | ||| ||||| |||||||||||| ||||  |||||||          || ||||||||||||||||||     
T  17946615 aggatctagtaaccaccgccaacggtcctgaatatgaacctgcaaaacaacgttatccagtaaagtgatacactccctcatactctcctcctcccaagct 17946714  T
Q  890 aacagacgccttctccaaccccacccattatcgcc 924  Q
    ||||  |||| ||||||| ||||||||||| ||||    
T  17946715 aacaaccgccatctccaaacccacccattaccgcc 17946749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 231 - 874
Target Start/End: Original strand, 17696205 - 17696848
Alignment:
Q  231 ggatgtctccaccaatcgtgaaaatcaaaagcaacaggcacaaagtttgaagatagtcacaagaaggaatttagctttactttatcaacaatacggtgag 330  Q
    ||||||||||||||||||| |||  ||||||||| |||| |||  || ||||| || || |  || ||||||| ||| ||||| || |||||| |    |    
T  17696205 ggatgtctccaccaatcgtaaaagccaaaagcaataggctcaatattcgaagaaagccagagaaaagaatttaacttaactttttcgacaatatgtaacg 17696304  T
Q  331 gatcaataaccgtatctgtgaagactcggttgtttctctccttccatatagcccaaacacacgcaagccaaacaaccttcaaatacaaatgtgtagatcg 430  Q
    ||||||||||||||||  |||| || |||||||||| |||||||||||| ||||||||||| |||||||||| |||||| | | ||| ||  |||||||     
T  17696305 gatcaataaccgtatcattgaaaacgcggttgtttcgctccttccatattgcccaaacacaagcaagccaaataaccttaagaaacacataagtagatct 17696404  T
Q  431 cggtaaccctgccaaatgaacaaactaagtgtaatgatccttaatgctacctgggggaacaaaatagaacccaagccattgacagagtaaaatccaaacc 530  Q
     || || || |||||||||  ||||| | ||||||||||||||||    ||||| ||||||||| | ||||||||||| ||||  ||||||| ||||||     
T  17696405 aggcaaacccgccaaatgagtaaactgaatgtaatgatccttaatagagcctggaggaacaaaagaaaacccaagccagtgaccaagtaaaacccaaaca 17696504  T
Q  531 attctaaacgattcacaaccaatgaagagatgatccgttgtttttatcaaatcgcatcctccaacacataaactgtcattaggttgaagaacacgacgtc 630  Q
     ||| ||| ||||| || ||||||||||||||| |||| ||||     |   | || ||||||||||| ||| |||| || ||||||||||   |||| |    
T  17696505 cttccaaaagattcgcatccaatgaagagatgacccgtcgtttcggatagtccacaccctccaacacacaaattgtcgtttggttgaagaatgagacgac 17696604  T
Q  631 gcgccagatctgatctcgtaagaattttgtcttgaatgaggcgccaagcaaaaagagaaacctttgtcggaaccactttgtgccacacatcaataactgc 730  Q
    || |||  | |  ||| ||| ||||| |||||||||  |  |||||||||||||| || || |||||||| |||| |||||||||||| |||||||   |    
T  17696605 gcaccaagttttctcttgtaggaattctgtcttgaagcaaccgccaagcaaaaagcgacacttttgtcgggaccaatttgtgccacacgtcaataaaaac 17696704  T
Q  731 accatcagccacctgttcgtcaatagttgttaggaaatgataagttccgcgaaccgagtagccatggacaagatcaagtaaccaccgccaatggtcctta 830  Q
      ||| |||||||||||| |||  | |||| || ||  ||||||| || | |||    || ||||| ||| |||| ||||||||||||||| |||||| |    
T  17696705 gtcattagccacctgttcttcagaatttgtgagaaagcgataagtcccaccaacactataaccatgaacaggatctagtaaccaccgccaacggtcctga 17696804  T
Q  831 gtataaacctacaaaacaacgttttccaacaaagtgacacactc 874  Q
     ||| ||||| |||||||| ||| ||||  ||||||| ||||||    
T  17696805 atatgaacctgcaaaacaatgttatccagtaaagtgatacactc 17696848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 231 - 429
Target Start/End: Complemental strand, 15504802 - 15504603
Alignment:
Q  231 ggatgtctccaccaatcgtgaaaatcaaaagcaacaggcacaaagtttgaagatagtcacaagaaggaatttagctttactttatcaacaatacggtgag 330  Q
    ||||||||||||||||||| |||| ||||||||| |||| |||  || ||||| || || |  || ||||||| ||| ||||| ||||||||| |    |    
T  15504802 ggatgtctccaccaatcgtaaaaaccaaaagcaataggctcaatattcgaagaaagccagagaaaagaatttaacttaactttttcaacaatatgtaacg 15504703  T
Q  331 gatcaataacc-gtatctgtgaagactcggttgtttctctccttccatatagcccaaacacacgcaagccaaacaaccttcaaatacaaatgtgtagatc 429  Q
    ||||||||||| |||||  |||| || |||||||||| |||||||||||| ||||||||||| |||||||||| |||||| ||| ||| ||| |||||||    
T  15504702 gatcaataacccgtatcattgaaaacacggttgtttcgctccttccatattgcccaaacacaagcaagccaaataaccttaaaaaacacatgagtagatc 15504603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 204 - 402
Target Start/End: Complemental strand, 16119941 - 16119743
Alignment:
Q  204 aattacatgatacccatacataggagtggatgtctccaccaatcgtgaaaatcaaaagcaacaggcacaaagtttgaagatagtcacaagaaggaattta 303  Q
    |||||||||||||||||||| || ||||||| |||||||||||||||||||||||| | || ||  ||||  ||||| ||  | || || || ||||| |    
T  16119941 aattacatgatacccatacaaagtagtggatatctccaccaatcgtgaaaatcaaacggaagagaaacaacatttgacgaaggccataaaaaagaattca 16119842  T
Q  304 gctttactttatcaacaatacggtgaggatcaataaccgtatctgtgaagactcggttgtttctctccttccatatagcccaaacacacgcaagccaaa 402  Q
     ||| ||||| |||||||||| | ||||||| | ||||  || | |||| ||   ||| |||||||||||||| || ||||||||||| || |||||||    
T  16119841 acttcactttttcaacaatactgagaggatccacaaccacatttttgaaaacatagttatttctctccttccaaattgcccaaacacaagccagccaaa 16119743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 203 - 264
Target Start/End: Complemental strand, 23257101 - 23257040
Alignment:
Q  203 aaattacatgatacccatacataggagtggatgtctccaccaatcgtgaaaatcaaaagcaa 264  Q
    ||||||||||| ||||||||| || ||||| |||||||||||||| ||||||||||||||||    
T  23257101 aaattacatgacacccatacacagaagtgggtgtctccaccaatcatgaaaatcaaaagcaa 23257040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 234 - 409
Target Start/End: Original strand, 9194710 - 9194885
Alignment:
Q  234 tgtctccaccaatcgtgaaaatcaaaagcaacaggcacaaagtttgaagatagtcacaagaaggaatttagctttactttatcaacaatacggtgaggat 333  Q
    |||||||||||||| |||||| |||| ||||| || ||||| || || || || || || |||||||| ||||| || || || || |||  ||||||||    
T  9194710 tgtctccaccaatcatgaaaaccaaacgcaactggtacaaaattcgacgaaagccataaaaaggaattcagcttcaccttttcgactatattgtgaggat 9194809  T
Q  334 caataaccgtatctgtgaagactcggttgtttctctccttccatatagcccaaacacacgcaagccaaacaacctt 409  Q
    |||| |||| || | ||||||  | |||||||||||||||||| || | ||||||||| || ||||| | ||||||    
T  9194810 caattaccgcatttttgaagatacagttgtttctctccttccaaattgtccaaacacaagcgagccagataacctt 9194885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 222 - 324
Target Start/End: Original strand, 7124089 - 7124191
Alignment:
Q  222 cataggagtggatgtctccaccaatcgtgaaaatcaaaagcaacaggcacaaagtttgaagatagtcacaagaaggaatttagctttactttatcaacaa 321  Q
    ||||||||||| ||||||||||||||||||||  |||| |||| ||| |||||||| ||||| |   | || |||||||| ||||||||| | |||||||    
T  7124089 cataggagtgggtgtctccaccaatcgtgaaatccaaacgcaagaggaacaaagttcgaagagaactataaaaaggaattcagctttactctttcaacaa 7124188  T
Q  322 tac 324  Q
    |||    
T  7124189 tac 7124191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 203 - 253
Target Start/End: Original strand, 12824482 - 12824532
Alignment:
Q  203 aaattacatgatacccatacataggagtggatgtctccaccaatcgtgaaa 253  Q
    ||||||||||| |||||||||||| | |||||||||||||||||| |||||    
T  12824482 aaattacatgacacccatacatagaattggatgtctccaccaatcatgaaa 12824532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 203 - 253
Target Start/End: Original strand, 12851546 - 12851596
Alignment:
Q  203 aaattacatgatacccatacataggagtggatgtctccaccaatcgtgaaa 253  Q
    ||||||||||| |||||||||||| | |||||||||||||||||| |||||    
T  12851546 aaattacatgacacccatacatagaattggatgtctccaccaatcatgaaa 12851596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 206 - 456
Target Start/End: Original strand, 13390502 - 13390752
Alignment:
Q  206 ttacatgatacccatacataggagtggatgtctccaccaatcgtgaaaatcaaaagcaacaggcacaaagtttgaagatagtcacaagaaggaatttagc 305  Q
    ||||||||||||||||||  | ||||| | ||| ||||||||||||||  |||| | || ||| ||||  ||||| || ||  | || || ||||| | |    
T  13390502 ttacatgatacccatacaaggtagtgggtatcttcaccaatcgtgaaagccaaacggaagaggaacaacatttgacgaaagctataaaaaagaattcaac 13390601  T
Q  306 tttactttatcaacaatacggtgaggatcaataaccgtatctgtgaagactcggttgtttctctccttccatatagcccaaacacacgcaagccaaacaa 405  Q
    || || || || |||||||   |||||||||||||| |||   | ||||| | ||| |||||||| |||||||| ||||||| ||| ||  |||||| ||    
T  13390602 ttcaccttttctacaatactaagaggatcaataaccatattgttaaagacacagttatttctctcattccatattgcccaaatacaagcctgccaaataa 13390701  T
Q  406 ccttcaaatacaaatgtgtagatcgcggtaaccctgccaaatgaacaaact 456  Q
    | || ||||| ||||| ||||||||||| |  || |||||||||| |||||    
T  13390702 cttttaaataaaaatgagtagatcgcggcatacccgccaaatgaataaact 13390752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 219 - 409
Target Start/End: Original strand, 40632806 - 40632996
Alignment:
Q  219 atacataggagtggatgtctccaccaatcgtgaaaatcaaaagcaacaggcacaaagtttgaagatagtcacaagaaggaatttagctttactttatcaa 318  Q
    ||||| || ||||| || ||||||||||| ||||||||||| || | ||  ||| | ||||| || || || || || ||||| ||||| || || || |    
T  40632806 atacaaagaagtgggtgcctccaccaatcatgaaaatcaaatgccaaagttacagaatttgacgagagccataaaaaagaattcagcttcaccttttcga 40632905  T
Q  319 caatacggtgaggatcaataaccgtatctgtgaagactcggttgtttctctccttccatatagcccaaacacacgcaagccaaacaacctt 409  Q
    |||||  || ||||||||| || |||||| |||| |  | ||| ||||||||||||||||| || || ||||| |||||||||| ||||||    
T  40632906 caatattgtaaggatcaattactgtatctttgaataagcagttatttctctccttccatattgcacatacacaggcaagccaaataacctt 40632996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 363 - 409
Target Start/End: Original strand, 26397594 - 26397640
Alignment:
Q  363 tttctctccttccatatagcccaaacacacgcaagccaaacaacctt 409  Q
    ||||||||||||||||| ||||| ||||| |||||||||| ||||||    
T  26397594 tttctctccttccatattgcccatacacaggcaagccaaataacctt 26397640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 672 - 717
Target Start/End: Original strand, 9195147 - 9195192
Alignment:
Q  672 cgccaagcaaaaagagaaacctttgtcggaaccactttgtgccaca 717  Q
    ||||||||||| |||||||| ||||| ||||||| |||||||||||    
T  9195147 cgccaagcaaagagagaaacttttgtaggaaccaatttgtgccaca 9195192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 672 - 721
Target Start/End: Original strand, 26397903 - 26397952
Alignment:
Q  672 cgccaagcaaaaagagaaacctttgtcggaaccactttgtgccacacatc 721  Q
    ||||| |||||||||||||| ||||| ||||||| ||| |||||||||||    
T  26397903 cgccatgcaaaaagagaaacttttgtaggaaccaatttatgccacacatc 26397952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 1e-53; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 231 - 874
Target Start/End: Original strand, 2854286 - 2854928
Alignment:
Q  231 ggatgtctccaccaatcgtgaaaatcaaaagcaacaggcacaaagtttgaagatagtcacaagaaggaatttagctttactttatcaacaatacggtgag 330  Q
    ||||||||||||||||||| |||  ||||||||| |||| |||  || ||||| || || |  || ||||||| ||| ||||| || |||||| |    |    
T  2854286 ggatgtctccaccaatcgtaaaagccaaaagcaataggctcaatattcgaagaaagccagagaaaagaatttaacttaactttttcgacaatatgtaacg 2854385  T
Q  331 gatcaataaccgtatctgtgaagactcggttgtttctctccttccatatagcccaaacacacgcaagccaaacaaccttcaaatacaaatgtgtagatcg 430  Q
    |||||||||||||||   |||| || ||| |||||| |||||||||||| ||||||||||| |||||||||  |||||| ||| ||| ||| |||||||     
T  2854386 gatcaataaccgtattattgaaaacacggctgtttcgctccttccatattgcccaaacacaagcaagccaagtaaccttaaaaaacacatgagtagatct 2854485  T
Q  431 cggtaaccctgccaaatgaacaaactaagtgtaatgatccttaatgctacctgggggaacaaaatagaacccaagccattgacagagtaaaatccaaacc 530  Q
     || || || |||||||||  ||||| | ||||||||||||||||   |||||| ||||||||| | || |||||||| ||||| ||||||| ||| ||     
T  2854486 aggcaaacccgccaaatgagtaaactgaatgtaatgatccttaatagaacctggaggaacaaaaga-aaaccaagccagtgacaaagtaaaacccagaca 2854584  T
Q  531 attctaaacgattcacaaccaatgaagagatgatccgttgtttttatcaaatcgcatcctccaacacataaactgtcattaggttgaagaacacgacgtc 630  Q
    |||| |||  ||||||  ||||||||||||||| || | ||||     | | | || ||||||||||||||| |||| || ||||||||||   |||| |    
T  2854585 attccaaaatattcacctccaatgaagagatgacccatcgtttcggatagaccacaccctccaacacataaattgtcgtttggttgaagaatgagacgac 2854684  T
Q  631 gcgccagatctgatctcgtaagaattttgtcttgaatgaggcgccaagcaaaaagagaaacctttgtcggaaccactttgtgccacacatcaataactgc 730  Q
    || |||  | || ||| ||| ||||| |||||||||  |  |||||||||||||  || || ||||||||||||| |||||||||||| |||| ||  ||    
T  2854685 gcaccaagtttgctcttgtaggaattctgtcttgaaacaaccgccaagcaaaaaacgacacttttgtcggaaccaatttgtgccacacgtcaagaaaagc 2854784  T
Q  731 accatcagccacctgttcgtcaatagttgttaggaaatgataagttccgcgaaccgagtagccatggacaagatcaagtaaccaccgccaatggtcctta 830  Q
    | ||| |||||||||||| |||  | |||| || ||| ||||||| || | |||    || ||||| ||| |||| ||||||||||||||| |||||| |    
T  2854785 atcattagccacctgttcttcagaatttgtgagaaaacgataagtcccaccaacactataaccatgaacaggatctagtaaccaccgccaacggtcctga 2854884  T
Q  831 gtataaacctacaaaacaacgttttccaacaaagtgacacactc 874  Q
     ||| ||||| |||||||||||| ||||  ||||||| ||||||    
T  2854885 atatgaacctgcaaaacaacgttatccagtaaagtgatacactc 2854928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 201 - 564
Target Start/End: Complemental strand, 29361589 - 29361226
Alignment:
Q  201 acaaattacatgatacccatacataggagtggatgtctccaccaatcgtgaaaatcaaaagcaacaggcacaaagtttgaagatagtcacaagaaggaat 300  Q
    |||| |||||||| ||||||||| |||||||| ||||||||||||||||||||| ||||||||| ||||||  |    || ||||| || ||||||||||    
T  29361589 acaagttacatgacacccatacaaaggagtgggtgtctccaccaatcgtgaaaaccaaaagcaataggcaccgataacgaggatagccataagaaggaat 29361490  T
Q  301 ttagctttactttatcaacaatacggtgaggatcaataaccgtatctgtgaagactcggttgtttctctccttccatatagcccaaacacacgcaagcca 400  Q
    | ||||| ||||| || ||||||  ||| |||||||||| || |||||||||||||| ||||||||||||||||||||| | |||||||||  |||||||    
T  29361489 taagcttcactttttctacaataatgtggggatcaataatcgcatctgtgaagactcagttgtttctctccttccatattggccaaacacaaacaagcca 29361390  T
Q  401 aacaaccttcaaatacaaatgtgtagatcgcggtaaccctgccaaatgaacaaactaagtgtaatgatccttaatgctacctgggggaacaaaatagaac 500  Q
    || |||||| | ||| || |||||  ||| ||| || || |||||||||| |||||||  ||| |||||   ||||  ||||||   ||||||| | ||     
T  29361389 aataaccttaagataaaagtgtgtcaatctcggcaaacccgccaaatgaataaactaaaagtagtgatctaaaatggaacctggacaaacaaaagaaaaa 29361290  T
Q  501 ccaagccattgacagagtaaaatccaaaccattctaaacgattcacaaccaatgaagagatgat 564  Q
    |||||||| ||||||| || || ||||||  ||| |||  | ||||| |||| |||||||||||    
T  29361289 ccaagccaatgacagactagaaaccaaactcttcaaaataaatcacatccaacgaagagatgat 29361226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 674 - 919
Target Start/End: Complemental strand, 29359890 - 29359637
Alignment:
Q  674 ccaagcaaaaagagaaacctttgtcggaaccactttgtgccacacatcaataactgcaccatcagccacctgttcgtcaatagttgttaggaaatgataa 773  Q
    |||||||||||||||||| ||||||||||||  ||| |||||||||||  | | || |||| || |||| |  || || ||||||||| ||||| ||||     
T  29359890 ccaagcaaaaagagaaacttttgtcggaaccggtttatgccacacatcgtttattgaaccaacaaccactt--tcttctatagttgtttggaaacgatac 29359793  T
Q  774 gttccgcgaaccgagtagccatggacaagatcaagtaaccaccgccaatggtccttagtataaacctacaaaacaacgttttccaacaaagtgacacact 873  Q
    || ||  |||||||||||||||| | | |||||||||||||    |||||||| | ||| | ||||||||||||||| |||||||||||||| |||||||    
T  29359792 gtcccatgaaccgagtagccatgaataggatcaagtaaccaatatcaatggtcatgagtgttaacctacaaaacaacattttccaacaaagtaacacact 29359693  T
Q  874 c----------tcctcctcccaagccaacagacgccttctccaaccccacccatta 919  Q
    |          ||||||||||| ||||||| |||||  ||||||||||||||||||    
T  29359692 ccctcacactatcctcctcccatgccaacaaacgccgcctccaaccccacccatta 29359637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 215 - 409
Target Start/End: Original strand, 4103231 - 4103425
Alignment:
Q  215 acccatacataggagtggatgtctccaccaatcgtgaaaatcaaaagcaacaggcacaaagtttgaagatagtcacaagaaggaatttagctttacttta 314  Q
    ||||||||| || | ||| |||||||||||||| ||||||  ||| ||||  || ||||| || || || || || ||||||||||| | ||| || ||     
T  4103231 acccatacaaagtaatgggtgtctccaccaatcatgaaaactaaatgcaattggtacaaaattcgacgaaagccataagaaggaattcatcttcaccttt 4103330  T
Q  315 tcaacaatacggtgaggatcaataaccgtatctgtgaagactcggttgtttctctccttccatatagcccaaacacacgcaagccaaacaacctt 409  Q
    |||||||||  || ||||||||| |||| || | ||||||  | |||||||||||||||||| || | ||||||||| |||||||| | ||||||    
T  4103331 tcaacaatattgtaaggatcaattaccgcatttttgaagatacagttgtttctctccttccaaattgtccaaacacaagcaagccatataacctt 4103425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 206 - 409
Target Start/End: Complemental strand, 9756416 - 9756209
Alignment:
Q  206 ttacatgatacccatacataggagtggatgtctccaccaatcgtgaaaatcaaaagc----aacaggcacaaagtttgaagatagtcacaagaaggaatt 301  Q
    |||||| | |||| |||| |||||||| |||||||||||||| |||| | |||| ||    || ||| ||||| || ||||| || || || ||||||||    
T  9756416 ttacataacacccctacaaaggagtgggtgtctccaccaatcatgaagaccaaacgcgcacaataggaacaaaattcgaagagagccataaaaaggaatt 9756317  T
Q  302 tagctttactttatcaacaatacggtgaggatcaataaccgtatctgtgaagactcggttgtttctctccttccatatagcccaaacacacgcaagccaa 401  Q
     | ||| || || |||||||||  | ||||||||||||||| || | | ||||| |||||||||  ||||||||| || | ||||| ||| |||||||||    
T  9756316 catcttcaccttgtcaacaataatgagaggatcaataaccgcatttttaaagacacggttgttttgctccttccaaattgtccaaatacaagcaagccaa 9756217  T
Q  402 acaacctt 409  Q
    | ||||||    
T  9756216 ataacctt 9756209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 206 - 456
Target Start/End: Original strand, 12607396 - 12607646
Alignment:
Q  206 ttacatgatacccatacataggagtggatgtctccaccaatcgtgaaaatcaaaagcaacaggcacaaagtttgaagatagtcacaagaaggaatttagc 305  Q
    |||||||| | ||||||| | |||| ||| |||||||||||| |||||| |||| |||| ||| ||  | |  || || || || || ||||||||||||    
T  12607396 ttacatgacatccatacaaaagagtagatatctccaccaatcatgaaaaccaaacgcaataggaacggaatgcgacgaaagccataaaaaggaatttagc 12607495  T
Q  306 tttactttatcaacaatacggtgaggatcaataaccgtatctgtgaagactcggttgtttctctccttccatatagcccaaacacacgcaagccaaacaa 405  Q
    || |||||||| ||||| | |  |||||||| ||||| || | ||||||| |  ||||||||||||||| | || ||||||  ||| || | |||||  |    
T  12607496 ttcactttatccacaatgctgaaaggatcaagaaccgcatttttgaagacgcatttgtttctctccttctagattgcccaactacaagccaaccaaatga 12607595  T
Q  406 ccttcaaatacaaatgtgtagatcgcggtaaccctgccaaatgaacaaact 456  Q
    |||| | |||  |||| ||| || ||||||| ||||||||||||| |||||    
T  12607596 ccttaagataagaatgagtacattgcggtaagcctgccaaatgaataaact 12607646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 315 - 411
Target Start/End: Complemental strand, 5195377 - 5195281
Alignment:
Q  315 tcaacaatacggtgaggatcaataaccgtatctgtgaagactcggttgtttctctccttccatatagcccaaacacacgcaagccaaacaaccttca 411  Q
    |||||||||| |  |||||||||||||| || | ||||||  | |||||| ||||||||||| || ||||||| ||| |||||||||| ||||||||    
T  5195377 tcaacaatactgaaaggatcaataaccgcatttttgaagatacagttgttcctctccttccaaattgcccaaatacaagcaagccaaataaccttca 5195281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 363 - 409
Target Start/End: Original strand, 31848352 - 31848398
Alignment:
Q  363 tttctctccttccatatagcccaaacacacgcaagccaaacaacctt 409  Q
    |||||||||||||| || ||||||| |||||||||||||||||||||    
T  31848352 tttctctccttccaaattgcccaaatacacgcaagccaaacaacctt 31848398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 202 - 266
Target Start/End: Original strand, 14782125 - 14782189
Alignment:
Q  202 caaattacatgatacccatacataggagtggatgtctccaccaatcgtgaaaatcaaaagcaaca 266  Q
    |||||||||||| ||||||||| |||||||| |||| ||||||||| || ||  |||||||||||    
T  14782125 caaattacatgacacccatacaaaggagtgggtgtcaccaccaatcatgcaagccaaaagcaaca 14782189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 259
Target Start/End: Original strand, 31848192 - 31848248
Alignment:
Q  203 aaattacatgatacccatacataggagtggatgtctccaccaatcgtgaaaatcaaa 259  Q
    ||||||||||| ||||||||| |||||||  |||||||||||||| |||||| ||||    
T  31848192 aaattacatgacacccatacaaaggagtgagtgtctccaccaatcatgaaaaccaaa 31848248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 363 - 409
Target Start/End: Original strand, 5675798 - 5675844
Alignment:
Q  363 tttctctccttccatatagcccaaacacacgcaagccaaacaacctt 409  Q
    ||||||||||||||||| ||||| ||||| |||||||||| ||||||    
T  5675798 tttctctccttccatattgcccatacacaggcaagccaaataacctt 5675844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 868 - 902
Target Start/End: Original strand, 17798721 - 17798755
Alignment:
Q  868 cacactctcctcctcccaagccaacagacgccttc 902  Q
    |||||||||||||||||||||||||| ||||||||    
T  17798721 cacactctcctcctcccaagccaacaaacgccttc 17798755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 660 - 722
Target Start/End: Original strand, 31848649 - 31848711
Alignment:
Q  660 tcttgaatgaggcgccaagcaaaaagagaaacctttgtcggaaccactttgtgccacacatca 722  Q
    ||||||| ||| ||||||||||| | ||| |||||||| ||||| | ||||||||||||||||    
T  31848649 tcttgaaagagacgccaagcaaacaaagacacctttgtaggaactaatttgtgccacacatca 31848711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 672 - 721
Target Start/End: Original strand, 4103688 - 4103737
Alignment:
Q  672 cgccaagcaaaaagagaaacctttgtcggaaccactttgtgccacacatc 721  Q
    ||||||||||||||||| || ||||| ||||||| ||| |||||||||||    
T  4103688 cgccaagcaaaaagagatacttttgtaggaaccaatttatgccacacatc 4103737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 1e-43; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 330 - 852
Target Start/End: Complemental strand, 12215323 - 12214801
Alignment:
Q  330 ggatcaataaccgtatctgtgaagactcggttgtttctctccttccatatagcccaaacacacgcaagccaaacaaccttcaaatacaaatgtgtagatc 429  Q
    |||||||||||||||||  |||| || |||||||||| |||||||||||| || |||||||| |||||||||| |||||| ||| ||| ||| |||||||    
T  12215323 ggatcaataaccgtatcattgaaaacacggttgtttcgctccttccatattgctcaaacacaagcaagccaaataaccttaaaaaacacatgagtagatc 12215224  T
Q  430 gcggtaaccctgccaaatgaacaaactaagtgtaatgatccttaatgctacctgggggaacaaaatagaacccaagccattgacagagtaaaatccaaac 529  Q
      || || || |||||||||  ||||| | ||||||||||||||||   |||||| ||||||||| | ||||||||||| ||||| ||  ||| ||||||    
T  12215223 taggcaaacccgccaaatgagtaaactgaatgtaatgatccttaatagaacctggaggaacaaaagaaaacccaagccagtgacaaagacaaacccaaac 12215124  T
Q  530 cattctaaacgattcacaaccaatgaagagatgatccgttgtttttatcaaatcgcatcctccaacacataaactgtcattaggttgaagaacacgacgt 629  Q
      ||| |||  |||| || |||||||| |||||| ||||  |||     |   | || ||||||||||||||| |||| |||||||||||||   ||||     
T  12215123 acttccaaaatattcgcatccaatgaaaagatgacccgtcatttcggataggccacaccctccaacacataaattgtcgttaggttgaagaatgagacga 12215024  T
Q  630 cgcgccagatctgatctcgtaagaattttgtcttgaatgaggcgccaagcaaaaagagaaacctttgtcggaaccactttgtgccacacatcaataactg 729  Q
    ||| |||  | || ||| ||| ||||| |||||||||  |   ||||||||||||| || || ||||||||||||| |||||||||||||||| |||       
T  12215023 cgcaccaagtttgctcttgtaggaattctgtcttgaagcaactgccaagcaaaaagcgacacttttgtcggaaccaatttgtgccacacatcagtaaaaa 12214924  T
Q  730 caccatcagccacctgttcgtcaatagttgttaggaaatgataagttccgcgaaccgagtagccatggacaagatcaagtaaccaccgccaatggtcctt 829  Q
    || ||| ||||||||| || |||  | |||| || ||| ||||||| || | |||    || ||||| ||| |||| ||||||||||||||| ||||||     
T  12214923 catcattagccacctgatcttcagaatttgtgagaaaacgataagtcccaccaacactataaccatgaacaggatctagtaaccaccgccaacggtcctg 12214824  T
Q  830 agtataaacctacaaaacaacgt 852  Q
    | ||| ||| | |||||||||||    
T  12214823 aatatgaacgtgcaaaacaacgt 12214801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 205 - 450
Target Start/End: Original strand, 19667625 - 19667870
Alignment:
Q  205 attacatgatacccatacataggagtggatgtctccaccaatcgtgaaaatcaaaagcaacaggcacaaagtttgaagatagtcacaagaaggaatttag 304  Q
    ||||||||| ||||||||| |||||||| |||||||||||||| |||||  |||| |||| ||| |||||||| ||||| |  || || |||||||| |     
T  19667625 attacatgacacccatacaaaggagtgggtgtctccaccaatcatgaaagccaaacgcaataggaacaaagttcgaagagatccataaaaaggaattcaa 19667724  T
Q  305 ctttactttatcaacaatacggtgaggatcaataaccgtatctgtgaagactcggttgtttctctccttccatatagcccaaacacacgcaagccaaaca 404  Q
    ||| ||||| |||||||||| | ||| ||| ||||||| || | | |||||   |||||||||||||||||| ||  |||||| ||| ||||  |||| |    
T  19667725 cttcactttttcaacaatactgagagaatcgataaccgcatttttaaagacaaagttgtttctctccttccaaatttcccaaatacaagcaaatcaaata 19667824  T
Q  405 accttcaaatacaaatgtgtagatcgcggtaaccctgccaaatgaa 450  Q
    ||||| | ||| ||||| | ||||| |||||| || ||||| ||||    
T  19667825 accttgagataaaaatgagaagatcacggtaagcccgccaagtgaa 19667870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 197 - 402
Target Start/End: Complemental strand, 10752183 - 10751978
Alignment:
Q  197 ataaacaaatt-acatgatacccatacataggagtggatgtctccaccaatcgtgaaaatcaaaagcaacaggcacaaagtttgaagatagtcacaagaa 295  Q
    ||||||||||| |||||| ||| ||||| | | |||| |||||||||||||| ||||||  ||| ||||  ||||    ||| |||||||| || || ||    
T  10752183 ataaacaaatttacatgacacc-atacaaatgggtgggtgtctccaccaatcatgaaaacgaaatgcaattggcattgtgttcgaagatagccataaaaa 10752085  T
Q  296 ggaatttagctttactttatcaacaatacggtgaggatcaataaccgtatctgtgaagactcggttgtttctctccttccatatagcccaaacacacgca 395  Q
    |||||| ||||| ||||| ||||||||||  ||||| ||||| |||  || | | ||||| |||||||||||||||||| |||| ||||||| ||| |||    
T  10752084 ggaattcagcttcactttttcaacaatactttgagggtcaattaccacatttttaaagacgcggttgtttctctccttctatattgcccaaagacaagca 10751985  T
Q  396 agccaaa 402  Q
    |||||||    
T  10751984 agccaaa 10751978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 231 - 409
Target Start/End: Original strand, 21477911 - 21478089
Alignment:
Q  231 ggatgtctccaccaatcgtgaaaatcaaaagcaacaggcacaaagtttgaagatagtcacaagaaggaatttagctttactttatcaacaatacggtgag 330  Q
    ||||||||||||||||||| ||| | |||| ||| |||| |||  || ||||| ||||| |  || ||||||| ||| ||||| ||||||||| |         
T  21477911 ggatgtctccaccaatcgtaaaagtaaaaaacaataggctcaatattcgaagaaagtcaaagaaaagaatttaacttaactttttcaacaatatgtaaca 21478010  T
Q  331 gatcaataaccgtatctgtgaagactcggttgtttctctccttccatatagcccaaacacacgcaagccaaacaacctt 409  Q
    ||||||||| |||||   |||| || |||||||| | |||||||||||| ||||||| ||| |||||||||| ||||||    
T  21478011 gatcaataatcgtattattgaaaacacggttgttccgctccttccatattgcccaaatacaagcaagccaaataacctt 21478089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 150
Target Start/End: Complemental strand, 7937485 - 7937444
Alignment:
Q  109 acaaggtgtgctaaagtgatgaatcacctaatgtctgttaca 150  Q
    |||||||||||||||||||||||||||| || ||||||||||    
T  7937485 acaaggtgtgctaaagtgatgaatcacccaaagtctgttaca 7937444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 167
Target Start/End: Original strand, 21477784 - 21477849
Alignment:
Q  102 accccgtacaaggtgtgctaaagtgatgaatcacctaatgtctgttacatcatcacgacacctaaa 167  Q
    |||||| ||||||||||||||| |||||||||  ||||| ||||||||| || ||| |||||||||    
T  21477784 accccgcacaaggtgtgctaaaatgatgaatcctctaatatctgttacaacaccacaacacctaaa 21477849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 868 - 897
Target Start/End: Original strand, 55428282 - 55428311
Alignment:
Q  868 cacactctcctcctcccaagccaacagacg 897  Q
    ||||||||||||||||||||||||||||||    
T  55428282 cacactctcctcctcccaagccaacagacg 55428311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 89; Significance: 2e-42; HSPs: 2)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 330 - 858
Target Start/End: Original strand, 42462 - 42990
Alignment:
Q  330 ggatcaataaccgtatctgtgaagactcggttgtttctctccttccatatagcccaaacacacgcaagccaaacaaccttcaaatacaaatgtgtagatc 429  Q
    |||||||||||||||||  |||| ||  ||||||||| ||||||||||||  |||||||||| |||||||||| |||||| ||| ||| ||| |||||||    
T  42462 ggatcaataaccgtatcattgaaaacatggttgtttcgctccttccatattacccaaacacaagcaagccaaataaccttaaaaaacacatgagtagatc 42561  T
Q  430 gcggtaaccctgccaaatgaacaaactaagtgtaatgatccttaatgctacctgggggaacaaaatagaacccaagccattgacagagtaaaatccaaac 529  Q
      || || || |||||||||  ||||| | ||||||||||||||||   |||||| ||||||||| | ||||||||||| ||||| ||||||| ||||||    
T  42562 taggcaaacccgccaaatgagtaaactgactgtaatgatccttaatagaacctggaggaacaaaagaaaacccaagccagtgacaaagtaaaacccaaac 42661  T
Q  530 cattctaaacgattcacaaccaatgaagagatgatccgttgtttttatcaaatcgcatcctccaacacataaactgtcattaggttgaagaacacgacgt 629  Q
      ||| |||  |||| || |||| ||| |||||  |||| ||||     |   | || ||||||||||||||| |||| |||||||||||||   ||||     
T  42662 acttccaaaatattcgcatccaaggaaaagatgccccgtcgtttaggatagcccacaccctccaacacataaattgtcgttaggttgaagaatgagacga 42761  T
Q  630 cgcgccagatctgatctcgtaagaattttgtcttgaatgaggcgccaagcaaaaagagaaacctttgtcggaaccactttgtgccacacatcaataactg 729  Q
    ||| |||  | || | | ||||||||| |||||||||  |  |||||||||||||| || || ||||||||||||| ||| |||  ||| ||| |||       
T  42762 cgcaccaagtttgctgttgtaagaattctgtcttgaagcaaccgccaagcaaaaagtgacacttttgtcggaaccaatttctgctccacgtcagtaaaaa 42861  T
Q  730 caccatcagccacctgttcgtcaatagttgttaggaaatgataagttccgcgaaccgagtagccatggacaagatcaagtaaccaccgccaatggtcctt 829  Q
    || ||| |||||||||||| |||  | |||| || ||| ||||||| || | |||    || ||||| ||| |||| ||||||||||||||| ||||||     
T  42862 catcattagccacctgttcttcagaatttgtgagaaaacgataagtcccaccaacactataaccatgaacaggatctagtaaccaccgccaacggtcctg 42961  T
Q  830 agtataaacctacaaaacaacgttttcca 858  Q
    | ||| ||||| |||||||||||| ||||    
T  42962 aatatgaacctgcaaaacaacgttatcca 42990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 330 - 858
Target Start/End: Original strand, 46382 - 46910
Alignment:
Q  330 ggatcaataaccgtatctgtgaagactcggttgtttctctccttccatatagcccaaacacacgcaagccaaacaaccttcaaatacaaatgtgtagatc 429  Q
    |||||||||||||||||  |||| ||  ||||||||| ||||||||||||  |||||||||| |||||||||| |||||| ||| ||| ||| |||||||    
T  46382 ggatcaataaccgtatcattgaaaacatggttgtttcgctccttccatattacccaaacacaagcaagccaaataaccttaaaaaacacatgagtagatc 46481  T
Q  430 gcggtaaccctgccaaatgaacaaactaagtgtaatgatccttaatgctacctgggggaacaaaatagaacccaagccattgacagagtaaaatccaaac 529  Q
      || || || |||||||||  ||||| | ||||||||||||||||   |||||| ||||||||| | ||||||||||| ||||| ||||||| ||||||    
T  46482 taggcaaacccgccaaatgagtaaactgactgtaatgatccttaatagaacctggaggaacaaaagaaaacccaagccagtgacaaagtaaaacccaaac 46581  T
Q  530 cattctaaacgattcacaaccaatgaagagatgatccgttgtttttatcaaatcgcatcctccaacacataaactgtcattaggttgaagaacacgacgt 629  Q
      ||| |||  |||| || |||| ||| |||||  |||| ||||     |   | || ||||||||||||||| |||| |||||||||||||   ||||     
T  46582 acttccaaaatattcgcatccaaggaaaagatgccccgtcgtttaggatagcccacaccctccaacacataaattgtcgttaggttgaagaatgagacga 46681  T
Q  630 cgcgccagatctgatctcgtaagaattttgtcttgaatgaggcgccaagcaaaaagagaaacctttgtcggaaccactttgtgccacacatcaataactg 729  Q
    ||| |||  | || | | ||||||||| |||||||||  |  |||||||||||||| || || ||||||||||||| ||| |||  ||| ||| |||       
T  46682 cgcaccaagtttgctgttgtaagaattctgtcttgaagcaaccgccaagcaaaaagtgacacttttgtcggaaccaatttctgctccacgtcagtaaaaa 46781  T
Q  730 caccatcagccacctgttcgtcaatagttgttaggaaatgataagttccgcgaaccgagtagccatggacaagatcaagtaaccaccgccaatggtcctt 829  Q
    || ||| |||||||||||| |||  | |||| || ||| ||||||| || | |||    || ||||| ||| |||| ||||||||||||||| ||||||     
T  46782 catcattagccacctgttcttcagaatttgtgagaaaacgataagtcccaccaacactataaccatgaacaggatctagtaaccaccgccaacggtcctg 46881  T
Q  830 agtataaacctacaaaacaacgttttcca 858  Q
    | ||| ||||| |||||||||||| ||||    
T  46882 aatatgaacctgcaaaacaacgttatcca 46910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 2e-39; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 106 - 283
Target Start/End: Original strand, 33006736 - 33006912
Alignment:
Q  106 cgtacaaggtgtgctaaagtgatgaatcacctaatgtctgttacatcatcacgacacctaaaacagatgtcatcacaactaaaaataaagcat-aaacaa 204  Q
    |||||||||||| |||||||||||||||||||||| ||| ||||| || |||||||||||| | ||||| || |||  |||||||||||| || ||||||    
T  33006736 cgtacaaggtgtcctaaagtgatgaatcacctaatatctcttacaacaccacgacacctaataaagatgccaccac--ctaaaaataaagtatcaaacaa 33006833  T
Q  205 attacatgatacccatacataggagtggatgtctccaccaatcgtgaaaatcaaaagcaacaggcacaaagtttgaaga 283  Q
     |||||||  ||||||||| |||||||||||||||||||||||||||||| ||||| ||| |||| ||||||| |||||    
T  33006834 tttacatgccacccatacaaaggagtggatgtctccaccaatcgtgaaaaccaaaaacaataggctcaaagttcgaaga 33006912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 593 - 796
Target Start/End: Complemental strand, 15140234 - 15140031
Alignment:
Q  593 aacacataaactgtcattaggttgaagaacacgacgtcgcgccagatctgatctcgtaagaattttgtcttgaatgaggcgccaagcaaaaagagaaacc 692  Q
    |||||||||| ||||  ||||||| |||||| | || ||| ||| ||  ||||| ||  ||||| | ||||||| ||| ||||||||||| ||||||||     
T  15140234 aacacataaattgtcgataggttggagaacatgtcgacgcaccaaattagatctagttggaattctatcttgaaggagacgccaagcaaacagagaaact 15140135  T
Q  693 tttgtcggaaccactttgtgccacacatcaataactgcaccatcagccacctgttcgtcaatagttgttaggaaatgataagttccgcgaaccgagtagc 792  Q
    ||||| ||||||| |||||||||||||||| | |    |||||||||||||||||| || ||| | |||||||||  |||||| || | |||||| ||||    
T  15140134 tttgtaggaaccaatttgtgccacacatcatttaacaaaccatcagccacctgttcctctatattggttaggaaacaataagtcccactaaccgaatagc 15140035  T
Q  793 catg 796  Q
    ||||    
T  15140034 catg 15140031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 201 - 273
Target Start/End: Complemental strand, 32603250 - 32603178
Alignment:
Q  201 acaaattacatgatacccatacataggagtggatgtctccaccaatcgtgaaaatcaaaagcaacaggcacaa 273  Q
    ||||||||||||| ||||||||| ||||  || |||||||||||||| |||||||||||||||| ||| ||||    
T  32603250 acaaattacatgacacccatacaaaggatggggtgtctccaccaatcatgaaaatcaaaagcaataggaacaa 32603178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 39994706 - 39994652
Alignment:
Q  102 accccgtacaaggtgtgctaaagtgatgaatcacctaatgtctgttacatcatca 156  Q
    |||||||||||||||||||||| |||||||||  ||||| ||||||||| |||||    
T  39994706 accccgtacaaggtgtgctaaaatgatgaatcctctaatatctgttacaacatca 39994652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 10005281 - 10005233
Alignment:
Q  102 accccgtacaaggtgtgctaaagtgatgaatcacctaatgtctgttaca 150  Q
    |||||| |||||||||||||||||||||||||  ||||| |||||||||    
T  10005281 accccgcacaaggtgtgctaaagtgatgaatcctctaatatctgttaca 10005233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 11123701 - 11123653
Alignment:
Q  102 accccgtacaaggtgtgctaaagtgatgaatcacctaatgtctgttaca 150  Q
    |||||| ||||||||||||||| |||||||||||| || ||||||||||    
T  11123701 accccgcacaaggtgtgctaaaatgatgaatcacccaacgtctgttaca 11123653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 264
Target Start/End: Complemental strand, 26404928 - 26404869
Alignment:
Q  205 attacatgatacccatacataggagtggatgtctccaccaatcgtgaaaatcaaaagcaa 264  Q
    ||||||||| | ||||||| || ||||| |||||||||||||| |||||| |||||||||    
T  26404928 attacatgacatccatacagagaagtgggtgtctccaccaatcatgaaaaccaaaagcaa 26404869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 363 - 409
Target Start/End: Original strand, 45468453 - 45468499
Alignment:
Q  363 tttctctccttccatatagcccaaacacacgcaagccaaacaacctt 409  Q
    ||||||||||||||||| ||||| ||||| |||||||||| ||||||    
T  45468453 tttctctccttccatattgcccatacacaagcaagccaaataacctt 45468499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 363 - 420
Target Start/End: Complemental strand, 3375908 - 3375851
Alignment:
Q  363 tttctctccttccatatagcccaaacacacgcaagccaaacaaccttcaaatacaaat 420  Q
    ||||||||||||||||| ||||| ||||| ||||| |||| |||||| | ||||||||    
T  3375908 tttctctccttccatattgcccatacacaggcaagtcaaataaccttaagatacaaat 3375851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 326 - 391
Target Start/End: Complemental strand, 12915577 - 12915512
Alignment:
Q  326 gtgaggatcaataaccgtatctgtgaagactcggttgtttctctccttccatatagcccaaacaca 391  Q
    ||||| |||||| |||| || | ||||||| ||||||||||| || |||||||| |||||||||||    
T  12915577 gtgagaatcaattaccgcatttttgaagacacggttgtttctatcattccatattgcccaaacaca 12915512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 56; Significance: 1e-22; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 203 - 458
Target Start/End: Original strand, 36184 - 36439
Alignment:
Q  203 aaattacatgatacccatacataggagtggatgtctccaccaatcgtgaaaatcaaaagcaacaggcacaaagtttgaagatagtcacaagaaggaattt 302  Q
    ||||||||||| ||||||||| |||||||  |||||||||||||| |||||| |||||||||  ||  |    || |||||||  || || | ||||||     
T  36184 aaattacatgacacccatacaaaggagtgagtgtctccaccaatcatgaaaaccaaaagcaattggagcgtgattcgaagataaccataaaatggaattc 36283  T
Q  303 agctttactttatcaacaatacggtgaggatcaataaccgtatctgtgaagactcggttgtttctctccttccatatagcccaaacacacgcaagccaaa 402  Q
      ||| ||||| |||| |||||  |||||||| || ||||||| | | ||||| ||||||||||| ||||||||||| |||||| || | | ||||||||    
T  36284 tacttcactttttcaagaatactatgaggatcgattaccgtattttttaagacacggttgtttctttccttccatattgcccaaccagaagaaagccaaa 36383  T
Q  403 caaccttcaaatacaaatgtgtagatcgcggtaaccctgccaaatgaacaaactaa 458  Q
     |||||| ||||| ||||||| |||||| ||||  || ||||||| || |||||||    
T  36384 taaccttaaaatataaatgtgaagatcgtggtatacccgccaaattaataaactaa 36439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0267 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 168
Target Start/End: Complemental strand, 11017 - 10951
Alignment:
Q  102 accccgtacaaggtgtgctaaagtgatgaatcacctaatgtctgttacatcatcacgacacctaaaa 168  Q
    |||||| |||||||||| ||||||||||||||  ||||| ||||||||| || ||| ||||||||||    
T  11017 accccgcacaaggtgtgttaaagtgatgaatcctctaatatctgttacaacaccacaacacctaaaa 10951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0423 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0423
Description:

Target: scaffold0423; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 231 - 380
Target Start/End: Original strand, 10187 - 10336
Alignment:
Q  231 ggatgtctccaccaatcgtgaaaatcaaaagcaacaggcacaaagtttgaagatagtcacaagaaggaatttagctttactttatcaacaatacggtgag 330  Q
    ||||||||||||||||||| |||  ||||||||| |||| |||  |||||||| || || |  || ||||||| ||| ||||| || |||||| |    |    
T  10187 ggatgtctccaccaatcgtaaaagccaaaagcaataggctcaatatttgaagaaagccagagaaaagaatttaacttaactttttcgacaatatgtaacg 10286  T
Q  331 gatcaataaccgtatctgtgaagactcggttgtttctctccttccatata 380  Q
    ||||||||||||||||  |||| || | ||||||||  ||||||||||||    
T  10287 gatcaataaccgtatcattgaaaacacagttgtttcgttccttccatata 10336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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