View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0766_low_11 (Length: 467)
Name: NF0766_low_11
Description: NF0766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0766_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 58 - 438
Target Start/End: Complemental strand, 762289 - 761909
Alignment:
| Q |
58 |
aacaaatggatacaaacaaaatttataaataactcatcatacatggatgttaagaaagagggaattttgaactcccaaaatggaaaatatcatagaattg |
157 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
762289 |
aacaaatggatacaaacaaaatttataaataactcatcatacatggatgttaagaaagagggaattttgaactcccaaaatggaaaatatcatagaattg |
762190 |
T |
|
| Q |
158 |
tacaaccacgttctacaaatatatctatacaatacaaatcgagtacttaaaaagagacaaaatcaagttcacaggaaaggcaatgtgtctaatggtatta |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
762189 |
tacaaccacgttctacaaatatatctatacaatacaaatcgagtacttaaaaagagacaaaatcaagttcacaggaaaggagatgtgtctaatggtatta |
762090 |
T |
|
| Q |
258 |
tgcctcatatgggcaacaaatatctttgaagaattgaagttccaaaaccaataattacaaagaaataatacactgttgaaatgtaccgaagtaagtggta |
357 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
762089 |
tgcctcatatgggcaataaatatctttgaagaattgaagttccaaaaccaataattacaaagaaataatacactgttgaaatgtaccgaaataagtggtg |
761990 |
T |
|
| Q |
358 |
ttatcnnnnnnngtagtgggttgctccttttttaggttgttgagaccatcttacttgtttcatgattgtgagaattactac |
438 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
761989 |
ttatctttttttgtagtgggttgctccttttttaggttgttgagaccatcttacttgtttcatgattgtgagaattactac |
761909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 5704 times since January 2019
Visitors: 4858