View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0766_low_12 (Length: 453)
Name: NF0766_low_12
Description: NF0766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0766_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 20 - 311
Target Start/End: Original strand, 32856037 - 32856328
Alignment:
| Q |
20 |
tatcttcaaagcactgtaactgttctgcactctgtggctactaccatcacccaataaatcatctctctttggaaagaaatcacactttaatttctgcaca |
119 |
Q |
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| T |
32856037 |
tatcttcaaagcactgtaactgttctgcactctgtggctactaccgtcacccaataaatcatctctctttggaaagaaatcacactttaatttctgcaca |
32856136 |
T |
|
| Q |
120 |
atttatgtagaaacagatacactttttaatctatttctaatctaacattttccccaaattagaaaccacggatgagagagggttggatagctcttgcttt |
219 |
Q |
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| T |
32856137 |
atttatgtagaaacagatacactttttaatctatttctaatctaacattttccccaaattagaaaccacggatgagagagggttggatagctcttgcttt |
32856236 |
T |
|
| Q |
220 |
gagttaagagagaaagagttgggggttctgggttcgaacgtggacaaagaaatagatctaaatttaacaactaattactaacctttgtcatt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32856237 |
gagttaagagagaaagagttgggggttctgggttcgaacgtggacagagaaatagatctaaatttaacaactaattactaacctttgtcatt |
32856328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 58 - 159
Target Start/End: Original strand, 32850670 - 32850766
Alignment:
| Q |
58 |
tactaccatcacccaataaatcatctctctttggaaagaaatcacactttaatttctgcacaatttatgtagaaacagatacactttttaatctatttct |
157 |
Q |
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||||||| ||||| | |||||||||| |||||| || | |||||||||| |||||||||||||| |||||||| |||||||||| |||||||||| |
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| T |
32850670 |
tactaccgtcacctagtaaatcatctatctttgcaaggtaatcacacttc-----ctgcacaatttatgcagaaacagctacactttttcatctatttct |
32850764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 312
Target Start/End: Complemental strand, 10223426 - 10223394
Alignment:
| Q |
280 |
aatttaacaactaattactaacctttgtcatta |
312 |
Q |
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|||||||||||||||||||||| |||||||||| |
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| T |
10223426 |
aatttaacaactaattactaacatttgtcatta |
10223394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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