View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0766_low_15 (Length: 439)
Name: NF0766_low_15
Description: NF0766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0766_low_15 |
 | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
| [»] scaffold0076 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 30 - 427
Target Start/End: Original strand, 5911176 - 5911581
Alignment:
| Q |
30 |
gttttcatgtagtatctacgactaaaattaacccaaaaatcatgatttctttgcaactactggcttaattttgtgattgacattctgctttattcttttg |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5911176 |
gttttcatgtagtatctacgactaaaattaacccaaaaatcatgatttctttgcaactactggcttaattttgtgattgacattctgctttattcttttg |
5911275 |
T |
|
| Q |
130 |
gcagaaaggtgtgtgaatgaagtaatggagtcaaaaggtggtaagaagaagtctagcagtagtagttcctcctttttgtacgaagctcctctcggttaca |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5911276 |
gcagaaaggtgtgtgaatgaagtaatggagtcaaaaggtggtaagaagaagtctagcagtagtagttcctcctttttgtacgaagctcctctcggttaca |
5911375 |
T |
|
| Q |
230 |
tcattgaagatgttcgacctaacggtggagtagaaaaattcaaatctgctgattactcaaacgtaagttgtttccatttcaatttcaattcctttgatta |
329 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
5911376 |
tcattgaagacgttcgacctaacggtggagtagaaaaattcaaatctgctgattactcaaacgtaagttgttcccatttcaatttcaattcctttgaata |
5911475 |
T |
|
| Q |
330 |
atgtcaacatt-------atagtttaaaatggttaaatttggctttgttttttaacacccctt-ttctttattgtgcagtgcacccgcaaaccatcctga |
421 |
Q |
| |
|
|| | |||||| ||||| ||| || | | | |||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5911476 |
attttaacattatagtagatagtataagattggttgacttggctttgttttttaacaccctttgttctttattatgcagtgcacccgcaaaccatcctga |
5911575 |
T |
|
| Q |
422 |
gatttt |
427 |
Q |
| |
|
|||||| |
|
|
| T |
5911576 |
gatttt |
5911581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 42 - 427
Target Start/End: Original strand, 5917851 - 5918247
Alignment:
| Q |
42 |
tatctacgactaaaattaacccaaaaatcatgatttctttgcaactactggcttaattttgtgattgacattctgctttattcttttggcagaaaggtgt |
141 |
Q |
| |
|
|||||||||| || | ||| ||| |||||||||||||||||||| |||||||||| ||||||| |||||||| ||||| |||| ||||||||||||||| |
|
|
| T |
5917851 |
tatctacgacaaatagtaatccagaaatcatgatttctttgcaattactggcttatttttgtgtttgacattttgcttctttctcttggcagaaaggtgt |
5917950 |
T |
|
| Q |
142 |
gtgaatgaagtaatggagtcaaaaggtggtaagaagaagtctagcagtagtagttcctcctttttgtacgaagctcctctcggttacatcattgaagatg |
241 |
Q |
| |
|
||||||||| |||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
5917951 |
gtgaatgaactaatggagtctaaaggtggtaaaaagaagtctagcagtagtaattcctcctttttgtacgaagctcctctcggttacatcattgaagacg |
5918050 |
T |
|
| Q |
242 |
ttcgacctaacggtggagtagaaaaattcaaatctgctgattactcaaacgtaagtt---gtttccatttcaatttcaattcctttgattaatgtcaaca |
338 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||| |||||||||||||||||| || |||| |||||||||| |||||||| ||||||||| |||| |
|
|
| T |
5918051 |
ttcgacccaacggtggcgtagaaaaattcaaatcacctgattactcaaacgtaatttcccatttcaatttcaattttaattccttcgattaatgttaaca |
5918150 |
T |
|
| Q |
339 |
t-------tatagtttaaaatggttaaatttggctttgttttttaacaccc-cttttctttattgtgcagtgcacccgcaaaccatcctgagatttt |
427 |
Q |
| |
|
| |||||| ||| || | ||||||||||| ||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5918151 |
ttatagtatatagtataagattggatgatttggctttgctttttgacacccttttttctttattatgcagtgcacccgcaaaccatcctgagatttt |
5918247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 115 - 427
Target Start/End: Complemental strand, 5903941 - 5903621
Alignment:
| Q |
115 |
tgctttattcttttggcagaaaggtgtgtgaatgaagtaatggagtcaaaaggtggtaagaagaagtctagcagtagtagttcctcctttttgtacgaag |
214 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5903941 |
tgctttattctttttgcagaaagttgtgtgaatgaactaatggagtcaaaaggtggtaagaagaagtctagcagtagtagttcctcctttttgtacgaag |
5903842 |
T |
|
| Q |
215 |
ctcctctcggttacatcattgaagatgttcgacctaacggtggagtagaaaaattcaaatctgctgattactcaaacgtaagtt---gtttccatttcaa |
311 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||| || ||| ||||| | |
|
|
| T |
5903841 |
ctcctctcggttacatcattgaagacgttcgacccaacggtggcgtagaaaaattcaaatctgctgattactcaaacgtaatttctcattttaatttcta |
5903742 |
T |
|
| Q |
312 |
tttcaattcctttgattaatgtcaacattatagtttaaaatggttaaatttggctttg-ttttttaacacccctttt-cttta---ttgtgcagtgcacc |
406 |
Q |
| |
|
||| |||||||||||||||| | ||||| ||||| ||| || | ||||||||||| ||||||||||||| |||| ||||| || ||||||||||| |
|
|
| T |
5903741 |
ttttaattcctttgattaattttaacatcatagtataagattggatgatttggctttgtttttttaacaccctttttgctttatttttatgcagtgcacc |
5903642 |
T |
|
| Q |
407 |
cgcaaaccatcctgagatttt |
427 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
5903641 |
cgcaaaccatcctgagatttt |
5903621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 160; Significance: 4e-85; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 79 - 427
Target Start/End: Complemental strand, 364079 - 363725
Alignment:
| Q |
79 |
tttgcaactactggcttaattttgtgattgacattctgctttattcttttggcagaaaggtgtgtgaatgaagtaatggagtcaaaaggtggtaagaaga |
178 |
Q |
| |
|
||||||| ||| |||||| ||||||| || ||||| || ||||||||||| ||| || ||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
364079 |
tttgcaattaccggcttatttttgtgttttacattttgatttattctttttccagtaa--agtgtgaatgaactaatggagtctaaaggtggtaagaaga |
363982 |
T |
|
| Q |
179 |
agtctagcagtagtagttcctcctttttgtacgaagctcctctcggttacatcattgaagatgttcgacctaacggtggagtagaaaaattcaaatctgc |
278 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
363981 |
agtctagcagtagtaattcctcctttttgtacgaagctcctctcggttacatcattgaagacgttcgacctaatggtggagtagaaaaattcaaatcacc |
363882 |
T |
|
| Q |
279 |
tgattactcaaacgta--agtt----------gtttccatttcaatttcaattcctttgattaatgtcaacattatagtttaaaatggttaaatttggct |
366 |
Q |
| |
|
|||||||||||||||| | || |||| |||||||||||||||||||||||||||||| |||||||| | | ||||| |||||||| |
|
|
| T |
363881 |
tgattactcaaacgtaataatttcccatttcaatttcaatttcaatttcaattcctttgattaatgtctacattata----agattggtt-gatttggct |
363787 |
T |
|
| Q |
367 |
ttgttttttaacaccc-cttttctttattgtgcagtgcacccgcaaaccatcctgagatttt |
427 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
363786 |
ttgttttttaacacccttttttctttattatgcagtgcacccgcaaaccatcctgacatttt |
363725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 143 - 297
Target Start/End: Original strand, 3703 - 3863
Alignment:
| Q |
143 |
tgaatgaagtaatggagtcaaaaggtggtaagaagaagtctagcagtagtagt------tcctcctttttgtacgaagctcctctcggttacatcattga |
236 |
Q |
| |
|
||||||| |||||||||| ||||| ||||| |||||||| || ||||||||| || || || || ||||||||||| ||||| |||| |||||| |
|
|
| T |
3703 |
tgaatgagctaatggagtctaaaggaggtaaaaagaagtccagtagtagtagtaaatcatcatcattattctacgaagctcccctcggatacagcattga |
3802 |
T |
|
| Q |
237 |
agatgttcgacctaacggtggagtagaaaaattcaaatctgctgattactcaaacgtaagt |
297 |
Q |
| |
|
||| |||| |||||||||||| | | || |||| ||| |||| |||||| ||||||||| |
|
|
| T |
3803 |
agacattcgtcctaacggtggaatcaagaagttcagatcagctgcttactccaacgtaagt |
3863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 5033 times since January 2019
Visitors: 4845