View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0766_low_19 (Length: 416)
Name: NF0766_low_19
Description: NF0766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0766_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 74 - 406
Target Start/End: Complemental strand, 27612831 - 27612493
Alignment:
| Q |
74 |
atcatccatggatgttaacaaactcttcagcaaccaacgttctctcagattaatttctcctctatttgtttcttcttcccgtacaagtttccttggttgc |
173 |
Q |
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| T |
27612831 |
atcatccatggatgttaacaaactcttcagcaaccaacgttctctcagattaatttctcctctatttgtttcttcttcccgtacaagtttccttggttgc |
27612732 |
T |
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| Q |
174 |
aaccacagtctcaaaccacctacatctttatcttca------gcttcatcacttcgttctcgaaataaacggaacaagttaggacttcttcgtcttcatt |
267 |
Q |
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|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
27612731 |
aaccacagtctcaaaccacctacatcttcatcttcatcttcagcttcatcacttcgttctccaaataaacggaacaagttaggacttcttcgtcttcatt |
27612632 |
T |
|
| Q |
268 |
ctccgcggtttgtattcaaagctgctttaaactctcaacttattgttgttgttgtcgttgttactttatctgctgtttcttggattcatttcactcttaa |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27612631 |
ctccgcggtttgtattcaaagctgctttaaactctcaacttattgttgttgttgtcgttgttactttatctgctgtttcttggattcatttcactcttaa |
27612532 |
T |
|
| Q |
368 |
caataagaaaaagaagaatctcaaccaggttagttcatc |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
27612531 |
caataagaaaaagaagaatctcaaccaggttagttcatc |
27612493 |
T |
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