View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0766_low_2 (Length: 781)
Name: NF0766_low_2
Description: NF0766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0766_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 608; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 608; E-Value: 0
Query Start/End: Original strand, 1 - 772
Target Start/End: Original strand, 28128967 - 28129739
Alignment:
| Q |
1 |
cagatgatggagccatcagtttctgtccctaatgaaactgtaaccatgtttgttgccactgaaattgcagatctaaagctagacccacatggactcttag |
100 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
28128967 |
cagataatggagccatcagtttctgtccctaatgaaactgtaaccatgtttgttgccactgaaattgcagatccaaagctagacccacatggactcttag |
28129066 |
T |
|
| Q |
101 |
actccacataaggattctgcaataacatgttactaatcagtaatactatacttaaattaaaaatcaaccaatatcaaagttagcatatcacaaatgtcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28129067 |
actccacataaggattctgcaataacatgttactaatcagtaatactatacttaaattaaaaatcaaccaatatcaaagttagcatatcacaaatgtcat |
28129166 |
T |
|
| Q |
201 |
ttgtgtcactctgaaattacattctatttttaagccgatttttatatacaacttcattaagttcttctaccnnnnnnnnnngagagacttaagttcttct |
300 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
28129167 |
ttgtgtcactctgaaattacattctatttttaagccgatttttatatacaacttcattaagttcttctacc-tttttttttgagagacttaagttcttct |
28129265 |
T |
|
| Q |
301 |
acttcttctttactatac--atatatgtagtatatcatggacacttcagatagatagtgtgtgagtgtgtccattgttcgacatctatcagtgtccgact |
398 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
28129266 |
acttcttctttactatacatatatatgtagtatatcatggacacttcagatagatattgtgtgagtgtgtccattgttggacatctatcagtgtccgact |
28129365 |
T |
|
| Q |
399 |
caacacatgtagttaaattcaattacttcnnnnnnnaaataattattgttagtgtggtgtatagggtttgtatctatatcaatacttcgtagtacataac |
498 |
Q |
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| T |
28129366 |
cggcacatgtatttaaatttaattacttttttttttaaataattattgttagtgtggtgtctagggtttgtatctatatcaatacttcatagtacataac |
28129465 |
T |
|
| Q |
499 |
ttggtgtcatgaaannnnnnnnnnnnnnnnngtaaccatgtaattggggcatacacaccagcttttgtcgatgattaatctctgtagtggattctctcca |
598 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
28129466 |
ttggtgtcatgaaattttttatatcttttttgtaaccatgtaattggggcatacacaccagcttttgtcgatgattaaactctgtagtggattctctcca |
28129565 |
T |
|
| Q |
599 |
ctcaacatgttttcattcagagcgttcaaacccgagactttattttagagattaagagagagtgaagtgatgagtactaaccaatgcaaatccacctcta |
698 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28129566 |
ctcaacatgttttcattcagagcgttcaaacccgagactttattttagagattaagagagagtgaagtgatgagtactaaccaatgcaaatccacctcta |
28129665 |
T |
|
| Q |
699 |
gcgcaccaagtttttggcatggtggtagaacgagcgccataccactctgggagactagttttccccagaataat |
772 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28129666 |
gcgcaccaagtttttggcatggtggtagaacgagcgccataccactctgggagactagttttccccagaataat |
28129739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 28110460 - 28110580
Alignment:
| Q |
1 |
cagatgatggagccatcagtttctgtccctaatgaaactgtaaccatgtttgttgccactgaaattgcagatctaaagctagacccacatggactcttag |
100 |
Q |
| |
|
||||| |||||||||| |||||||||||| || ||||||| ||||||||| |||||||||||||| || ||| |||||||||| |||||||| | | |
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| T |
28110460 |
cagataatggagccatgagtttctgtccccaaagaaactgcaaccatgttagttgccactgaaatggcttatccaaagctagacgtgcatggactttcgg |
28110559 |
T |
|
| Q |
101 |
actccacataaggattctgca |
121 |
Q |
| |
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| ||||||||||| ||||||| |
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| T |
28110560 |
attccacataagggttctgca |
28110580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 651 - 769
Target Start/End: Original strand, 28114076 - 28114201
Alignment:
| Q |
651 |
taagagagagtga-agtgatgagtacta---accaatgcaaatccacctctagcgcaccaagtttttg---gcatggtggtagaacgagcgccataccac |
743 |
Q |
| |
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||||||||||||| |||||||||||||| ||||| ||||||||||||||| |||||||| || | |||| | | ||||||| ||||||||| |
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| T |
28114076 |
taagagagagtgatagtgatgagtactactaaccaagccaaatccacctctagggcaccaagcttgtcctagcatttttgaagaacgaatcccataccac |
28114175 |
T |
|
| Q |
744 |
tctgggagactagttttccccagaat |
769 |
Q |
| |
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||||| |||||||||||||||||||| |
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|
| T |
28114176 |
tctggaagactagttttccccagaat |
28114201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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