View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0766_low_22 (Length: 404)

Name: NF0766_low_22
Description: NF0766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0766_low_22
NF0766_low_22
[»] chr7 (1 HSPs)
chr7 (30-393)||(44829986-44830349)
[»] chr1 (4 HSPs)
chr1 (271-351)||(16902381-16902461)
chr1 (271-338)||(23525711-23525778)
chr1 (276-338)||(27938428-27938489)
chr1 (266-387)||(24875492-24875613)
[»] chr2 (2 HSPs)
chr2 (294-351)||(31534138-31534195)
chr2 (268-338)||(11365664-11365734)
[»] chr8 (3 HSPs)
chr8 (276-380)||(3096229-3096332)
chr8 (273-338)||(2880598-2880663)
chr8 (274-326)||(12466483-12466535)
[»] chr5 (1 HSPs)
chr5 (268-381)||(41354874-41354987)
[»] chr4 (1 HSPs)
chr4 (266-324)||(952785-952843)


Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 30 - 393
Target Start/End: Original strand, 44829986 - 44830349
Alignment:
Q  30 attgtcgctccccctccatgtttttcctatccatacaataagtattattagcatataacnnnnnnntgaaaagaataaacttgcatacaccccctttcat 129  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  44829986 attgtcgctccccctccatgttttgcctatccatacaataagtattattagcatataacaaaaaaatgaaaagaataaacttgcatacaccccctttcat 44830085  T
Q  130 gcaagcaacaaattagaaattaaagtgatttgaactaggcatggaaacaaaactagtactcttccgatttcaaaatacagacacgcggcgagtaacagag 229  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  44830086 gcaagcaacaaattagaaattaaagtgatttgaactaggcgtggaaacaaaactagtactcttccgatttcaaaatacagacacggggcgagtaacagag 44830185  T
Q  230 atattggtaccgtccccgatcccgtctctaatgtgaaaaattattgatatgcaacatgcaagcttctaaatgtcatccttacttctgagatattttttaa 329  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44830186 atattggtaccgtccccgatcccgtctctaatgtgaaaaattatcgatatgcaacatgcaagcttctaaatgtcatccttacttctgagatattttttaa 44830285  T
Q  330 cttttaatcgttgtgaatatttcccatggtttgcaattgacaaatacacatgatgttgagtatt 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44830286 cttttaatcgttgtgaatatttcccatggtttgcaattgacaaatacacatgatgttgagtatt 44830349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 271 - 351
Target Start/End: Complemental strand, 16902461 - 16902381
Alignment:
Q  271 tattgatatgcaacatgcaagcttctaaatgtcatccttacttctgagatattttttaacttttaatcgttgtgaatattt 351  Q
    ||||| ||||||||||||||||  |||| ||| |||| ||||| ||||||||| || ||||||||||| ||||||||||||    
T  16902461 tattgttatgcaacatgcaagccactaagtgtgatccctacttttgagatattattgaacttttaatcattgtgaatattt 16902381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 271 - 338
Target Start/End: Complemental strand, 23525778 - 23525711
Alignment:
Q  271 tattgatatgcaacatgcaagcttctaaatgtcatccttacttctgagatattttttaacttttaatc 338  Q
    |||| ||||||||||||||| | |||||||||||||| ||||| |||||||||||| || ||||||||    
T  23525778 tattaatatgcaacatgcaaacctctaaatgtcatccctacttttgagatatttttgaatttttaatc 23525711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 338
Target Start/End: Original strand, 27938428 - 27938489
Alignment:
Q  276 atatgcaacatgcaagcttctaaatgtcatccttacttctgagatattttttaacttttaatc 338  Q
    ||||||||||||||||| |||||||||||||| ||||| | |||| ||||| |||||||||||    
T  27938428 atatgcaacatgcaagcctctaaatgtcatccatacttttaagat-tttttgaacttttaatc 27938489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 387
Target Start/End: Original strand, 24875492 - 24875613
Alignment:
Q  266 aaaattattgatatgcaacatgcaagcttctaaatgtcatccttacttctgagatattttttaacttttaatcgttgtgaatatttcccatggtttgcaa 365  Q
    ||||||||||||| |||||||| |  | ||||| | |||||  ||||| ||| |||||||| |||||||||||  |  ||| ||||||  |||||| |||    
T  24875492 aaaattattgataagcaacatgtacacctctaagtttcatcactacttttgacatatttttgaacttttaatcactaagaacatttccgctggttttcaa 24875591  T
Q  366 ttgacaaatacacatgatgttg 387  Q
    ||||||| || ||||| |||||    
T  24875592 ttgacaactatacatggtgttg 24875613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 294 - 351
Target Start/End: Original strand, 31534138 - 31534195
Alignment:
Q  294 tctaaatgtcatccttacttctgagatattttttaacttttaatcgttgtgaatattt 351  Q
    ||||| |||| ||||||||| ||||||||| || ||||||||||||||||||| ||||    
T  31534138 tctaattgtcgtccttacttttgagatattattaaacttttaatcgttgtgaacattt 31534195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 338
Target Start/End: Complemental strand, 11365734 - 11365664
Alignment:
Q  268 aattattgatatgcaacatgcaagcttctaaatgtcatccttacttctgagatattttttaacttttaatc 338  Q
    |||||||||||||| ||||| |||| |||||||||||  |||| || ||| ||||| ||||||||| ||||    
T  11365734 aattattgatatgcgacatgtaagcctctaaatgtcactcttagttttgatatattgtttaactttaaatc 11365664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 380
Target Start/End: Complemental strand, 3096332 - 3096229
Alignment:
Q  276 atatgcaacatgcaagcttctaaatgtcatccttacttctgagatattttttaacttttaatcgttgtgaatatttcccatggtttgcaattgacaaata 375  Q
    ||||||||||| ||||  |||||||||||||| ||||| |||||||||||  |||| ||||||  | | |  ||||||| || ||||||||||| |||||    
T  3096332 atatgcaacatacaagtctctaaatgtcatccatacttttgagatattttagaactgttaatcactatcaccatttccc-tgatttgcaattgaaaaata 3096234  T
Q  376 cacat 380  Q
    |||||    
T  3096233 cacat 3096229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 338
Target Start/End: Original strand, 2880598 - 2880663
Alignment:
Q  273 ttgatatgcaacatgcaagcttctaaatgtcatccttacttctgagatattttttaacttttaatc 338  Q
    ||||| ||||| ||| |||| ||||| |||||||| ||||| |||||| ||||| |||||||||||    
T  2880598 ttgatgtgcaagatgaaagcctctaagtgtcatccctacttttgagatgtttttaaacttttaatc 2880663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 326
Target Start/End: Complemental strand, 12466535 - 12466483
Alignment:
Q  274 tgatatgcaacatgcaagcttctaaatgtcatccttacttctgagatattttt 326  Q
    |||||| |||||||| ||| | |||||||||||| ||||| ||||||||||||    
T  12466535 tgatatacaacatgctagcctttaaatgtcatccatacttttgagatattttt 12466483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 381
Target Start/End: Complemental strand, 41354987 - 41354874
Alignment:
Q  268 aattattgatatgcaacatgcaagcttctaaatgtcatccttacttctgagatatttttt-aacttttaatcgttgtgaatatttcccatggtttgcaat 366  Q
    |||||||||||||||||| | |||| ||||||   ||| | ||| | |||||| |||||| ||||||||||| ||||||| | ||| | || ||||||||    
T  41354987 aattattgatatgcaacacgaaagcatctaaactacattcctacctttgagattttttttaaacttttaatcattgtgaacaattctc-tgatttgcaat 41354889  T
Q  367 tgacaaatacacatg 381  Q
    | |||||||||||||    
T  41354888 taacaaatacacatg 41354874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 324
Target Start/End: Original strand, 952785 - 952843
Alignment:
Q  266 aaaattattgatatgcaacatgcaagcttctaaatgtcatccttacttctgagatattt 324  Q
    ||||||||||||||||||||||||||  ||||||| |||||   |||| ||||||||||    
T  952785 aaaattattgatatgcaacatgcaagtctctaaatttcatcgccacttttgagatattt 952843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 5460 times since January 2019
Visitors: 4854