View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0766_low_23 (Length: 395)
Name: NF0766_low_23
Description: NF0766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0766_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 19 - 366
Target Start/End: Complemental strand, 762256 - 761909
Alignment:
| Q |
19 |
tcatcatacatggatgttaagaaagagggaattttgaactcccaaaatggaaaatatcatagaattgtacaaccacgttctacaaatatatctatacaat |
118 |
Q |
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| T |
762256 |
tcatcatacatggatgttaagaaagagggaattttgaactcccaaaatggaaaatatcatagaattgtacaaccacgttctacaaatatatctatacaat |
762157 |
T |
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| Q |
119 |
acaaatcgagtacttaaaaagagacaaaatcaagttcacaggaaaggcaatgtgtctaatggtattatgcctcatatgggcaacaaatatctttgaagaa |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
762156 |
acaaatcgagtacttaaaaagagacaaaatcaagttcacaggaaaggagatgtgtctaatggtattatgcctcatatgggcaataaatatctttgaagaa |
762057 |
T |
|
| Q |
219 |
ttgaagttccaaaaccaataattacaaagaaataatacactgttgaaatgtaccgaagtaagtggtattatcnnnnnnngtagtgggttgctcctttttt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||| |
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| T |
762056 |
ttgaagttccaaaaccaataattacaaagaaataatacactgttgaaatgtaccgaaataagtggtgttatctttttttgtagtgggttgctcctttttt |
761957 |
T |
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| Q |
319 |
aggttgttgagaccatcttacttgtttcatgattgtgagaattactac |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
761956 |
aggttgttgagaccatcttacttgtttcatgattgtgagaattactac |
761909 |
T |
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