View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0766_low_27 (Length: 379)

Name: NF0766_low_27
Description: NF0766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0766_low_27
NF0766_low_27
[»] chr4 (8 HSPs)
chr4 (258-375)||(55724457-55724575)
chr4 (132-194)||(55724331-55724393)
chr4 (283-376)||(1827284-1827377)
chr4 (274-376)||(19732722-19732825)
chr4 (271-373)||(23641322-23641425)
chr4 (271-373)||(23646980-23647083)
chr4 (271-373)||(47420110-47420213)
chr4 (274-376)||(11585920-11586022)
[»] scaffold1350 (1 HSPs)
scaffold1350 (264-379)||(844-962)
[»] chr3 (6 HSPs)
chr3 (268-376)||(19891979-19892088)
chr3 (274-376)||(17077032-17077135)
chr3 (274-376)||(12333822-12333925)
chr3 (274-376)||(961897-962000)
chr3 (271-373)||(2365584-2365687)
chr3 (271-376)||(19918960-19919066)
[»] chr2 (1 HSPs)
chr2 (274-376)||(33514927-33515030)
[»] chr8 (5 HSPs)
chr8 (265-376)||(13878212-13878324)
chr8 (271-355)||(41664099-41664183)
chr8 (271-373)||(7925692-7925795)
chr8 (280-370)||(36493690-36493781)
chr8 (295-376)||(32267857-32267939)
[»] chr6 (8 HSPs)
chr6 (271-355)||(24766158-24766242)
chr6 (274-376)||(15955717-15955820)
chr6 (274-376)||(17605068-17605171)
chr6 (274-376)||(13939021-13939124)
chr6 (274-376)||(17576451-17576554)
chr6 (274-376)||(18681308-18681411)
chr6 (271-361)||(2554923-2555013)
chr6 (289-355)||(13086868-13086934)
[»] chr5 (7 HSPs)
chr5 (274-376)||(25856173-25856276)
chr5 (274-376)||(33170961-33171064)
chr5 (281-361)||(27164836-27164917)
chr5 (271-377)||(28534407-28534514)
chr5 (271-373)||(42515026-42515129)
chr5 (286-379)||(38358767-38358861)
chr5 (283-355)||(23239706-23239778)
[»] chr1 (2 HSPs)
chr1 (277-373)||(47621813-47621910)
chr1 (274-376)||(19171412-19171515)
[»] scaffold0034 (1 HSPs)
scaffold0034 (271-373)||(104574-104677)
[»] chr7 (3 HSPs)
chr7 (271-373)||(4936859-4936962)
chr7 (286-379)||(18768703-18768797)
chr7 (283-376)||(29969277-29969371)
[»] scaffold0472 (1 HSPs)
scaffold0472 (283-376)||(4555-4649)


Alignment Details
Target: chr4 (Bit Score: 103; Significance: 4e-51; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 258 - 375
Target Start/End: Original strand, 55724457 - 55724575
Alignment:
Q  258 attagtcgccacggcctcagttttagtgaatggtagccctacggatgagtttccccttgagaggggtttacgtcagggtgaccctctat-cccctttttg 356  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  55724457 attagtcgccacggcttcagttttagtgaatggtagccctgcggatgagtttccccttgagaggggtttacgtcagggtgaccctctatccccctttttg 55724556  T
Q  357 tttttgttagcagcagaag 375  Q
    |||||||||||||||||||    
T  55724557 tttttgttagcagcagaag 55724575  T

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Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 132 - 194
Target Start/End: Original strand, 55724331 - 55724393
Alignment:
Q  132 atgagtacttgtcataataaaaaattgtatttgatacattttaggcacatgtgtttggtttac 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55724331 atgagtacttgtcataataaaaaattgtatttgatacattttaggcacatgtgtttggtttac 55724393  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 283 - 376
Target Start/End: Original strand, 1827284 - 1827377
Alignment:
Q  283 gtgaatggtagccctacggatgagtttccccttgagaggggtttacgtcagggtgaccctctatcccctttttgtttttgttagcagcagaagg 376  Q
    ||||||||||| | ||| |||||||||| ||||||  |||| |||||||||||||||||| |||| ||||||| ||||| || |||||||||||    
T  1827284 gtgaatggtagtcatactgatgagtttcaccttgaacggggattacgtcagggtgaccctttatctcctttttatttttattggcagcagaagg 1827377  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 274 - 376
Target Start/End: Original strand, 19732722 - 19732825
Alignment:
Q  274 tcagttttagtgaatggtagccctacggatgagtttccccttgagaggggtttacgtcagggtgaccctctatc-ccctttttgtttttgttagcagcag 372  Q
    ||||| ||||||||||| || |||||  | ||||| || |||||  ||||||||||||||||||||||| |||| || |||||||| || || |||||||    
T  19732722 tcagtgttagtgaatggcagtcctactaacgagttccctcttgaacggggtttacgtcagggtgaccctttatcgccttttttgttcttattggcagcag 19732821  T
Q  373 aagg 376  Q
    ||||    
T  19732822 aagg 19732825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 373
Target Start/End: Original strand, 23641322 - 23641425
Alignment:
Q  271 gcctcagttttagtgaatggtagccctacggatgagtttccccttgagaggggtttacgtcagggtgaccctctatccccttt-ttgtttttgttagcag 369  Q
    ||||||||| | |||||||| || ||||| ||||||||| | |||||  |||| |||||||||||||| |||||||| ||||| || ||||| || ||||    
T  23641322 gcctcagttcttgtgaatggcagtcctactgatgagttttctcttgaacggggattacgtcagggtgatcctctatctcctttcttatttttattggcag 23641421  T
Q  370 caga 373  Q
    ||||    
T  23641422 caga 23641425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 373
Target Start/End: Original strand, 23646980 - 23647083
Alignment:
Q  271 gcctcagttttagtgaatggtagccctacggatgagtttccccttgagaggggtttacgtcagggtgaccctctatccccttt-ttgtttttgttagcag 369  Q
    ||||||||| | |||||||| || ||||| ||||||||| | |||||  |||| |||||||||||||| |||||||| ||||| || ||||| || ||||    
T  23646980 gcctcagttcttgtgaatggcagtcctactgatgagttttctcttgaacggggattacgtcagggtgatcctctatctcctttcttatttttattggcag 23647079  T
Q  370 caga 373  Q
    ||||    
T  23647080 caga 23647083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 373
Target Start/End: Complemental strand, 47420213 - 47420110
Alignment:
Q  271 gcctcagttttagtgaatggtagccctacggatgagtttccccttgagaggggtttacgtcagggtgaccctctatccccttt-ttgtttttgttagcag 369  Q
    ||||||||| | |||||||| || ||||| ||||||||| | |||||  |||| |||||||||||||| |||||||| ||||| || ||||| || ||||    
T  47420213 gcctcagttctggtgaatggaagtcctactgatgagttttctcttgaacggggattacgtcagggtgatcctctatctcctttcttatttttattggcag 47420114  T
Q  370 caga 373  Q
    ||||    
T  47420113 caga 47420110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 376
Target Start/End: Original strand, 11585920 - 11586022
Alignment:
Q  274 tcagttttagtgaatggtagccctacggatgagtttccccttgagaggggtttacgtcagggtgaccctctatcccctttttgtttttgttagcagcaga 373  Q
    |||||||||||||||||||| || || || ||||||   || ||| ||||| |  | |||||||||||| || |||| |||| ||||| |||||||||||    
T  11585920 tcagttttagtgaatggtagtccgactgaagagttttatctggagtggggtcttaggcagggtgaccctttaacccccttttatttttattagcagcaga 11586019  T
Q  374 agg 376  Q
    |||    
T  11586020 agg 11586022  T

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Target: scaffold1350 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold1350
Description:

Target: scaffold1350; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 264 - 379
Target Start/End: Complemental strand, 962 - 844
Alignment:
Q  264 cgccacggcctcagttttagtgaatggtagccctacggatgagtttccccttgagaggggtttacgtcagggtgaccctctatcccc---tttttgtttt 360  Q
    ||||||| | |||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||| |||||   ||||||||||    
T  962 cgccacgacttcagttttagtgaatggtagccctacagattagtttccccttgagcggggtttacgtcagggtgaccctctttccccccttttttgtttt 863  T
Q  361 tgttagcagcagaaggact 379  Q
    ||||||||||| |||||||    
T  862 tgttagcagcataaggact 844  T

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Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 268 - 376
Target Start/End: Complemental strand, 19892088 - 19891979
Alignment:
Q  268 acggcctcagttttagtgaatggtagccctacggatgagtttccccttgagaggggtttacgtcagggtgaccctctatccccttt-ttgtttttgttag 366  Q
    ||||| ||||||||||||||||| ||||||| |||||||||||| || ||   ||||||| ||||||||||||||||||| ||||| |||||||||||||    
T  19892088 acggcttcagttttagtgaatggcagccctaaggatgagtttcctctagaacagggtttaagtcagggtgaccctctatctcctttcttgtttttgttag 19891989  T
Q  367 cagcagaagg 376  Q
    ||||||||||    
T  19891988 cagcagaagg 19891979  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 274 - 376
Target Start/End: Original strand, 17077032 - 17077135
Alignment:
Q  274 tcagttttagtgaatggtagccctacggatgagtttccccttgagaggggtttacgtcagggtgaccctctatc-ccctttttgtttttgttagcagcag 372  Q
    ||||||||||||||||  || ||||| ||||||||||  ||||| |||||||||||| |||||||  ||||||| |||||| ||||||| |||| |||||    
T  17077032 tcagttttagtgaatgacagtcctactgatgagtttcatcttgaaaggggtttacgtaagggtgaatctctatctccctttatgtttttattagaagcag 17077131  T
Q  373 aagg 376  Q
    ||||    
T  17077132 aagg 17077135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 274 - 376
Target Start/End: Original strand, 12333822 - 12333925
Alignment:
Q  274 tcagttttagtgaatggtagccctacggatgagtttccccttgagaggggtttacgtcagggtgaccctctatccccttt-ttgtttttgttagcagcag 372  Q
    |||||||||||||| || || ||||| ||||||||  | || ||| | ||||||||||||||||||||||| || ||||| |||||| ||||||| ||||    
T  12333822 tcagttttagtgaacggcagtcctacagatgagttctctctagagcgaggtttacgtcagggtgaccctctctctcctttcttgtttctgttagctgcag 12333921  T
Q  373 aagg 376  Q
    ||||    
T  12333922 aagg 12333925  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 274 - 376
Target Start/End: Original strand, 961897 - 962000
Alignment:
Q  274 tcagttttagtgaatggtagccctacggatgagtttccccttgagaggggtttacgtcagggtgaccctctatc-ccctttttgtttttgttagcagcag 372  Q
    ||||| ||||||||||| |||||||| || ||||| || |||||  ||||||||||| |||| || |||||||| || |||||||||||  ||||| |||    
T  961897 tcagtgttagtgaatggaagccctacagacgagttccctcttgaacggggtttacgttagggcgatcctctatcgccttttttgtttttactagcaacag 961996  T
Q  373 aagg 376  Q
    ||||    
T  961997 aagg 962000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 373
Target Start/End: Complemental strand, 2365687 - 2365584
Alignment:
Q  271 gcctcagttttagtgaatggtagccctacggatgagtttccccttgagaggggtttacgtcagggtgaccctctatccccttt-ttgtttttgttagcag 369  Q
    ||||||||| | |||||||| || ||||| ||||||||| | |||||  |||| |||||||||||||| |||||||| ||||| || ||||| || ||||    
T  2365687 gcctcagttcttgtgaatggcagtcctactgatgagttttctcttgaacggggattacgtcagggtgatcctctatctcctttcttatttttattggcag 2365588  T
Q  370 caga 373  Q
    ||||    
T  2365587 caga 2365584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 376
Target Start/End: Original strand, 19918960 - 19919066
Alignment:
Q  271 gcctcagttttagtgaatggtagccctacggatgagtttccccttgagaggggtttacgtcagggtgaccctctatc-ccctttttgtttttgttagcag 369  Q
    ||||||||| | |||||||| || ||||| |||||||||   |||||  |||| ||||||||||| || |||||||| || ||||| ||||| || ||||    
T  19918960 gcctcagttcttgtgaatggcagtcctactgatgagttttttcttgaacggggattacgtcagggagatcctctatctccttttttatttttattggcag 19919059  T
Q  370 cagaagg 376  Q
    |||||||    
T  19919060 cagaagg 19919066  T

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Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 274 - 376
Target Start/End: Original strand, 33514927 - 33515030
Alignment:
Q  274 tcagttttagtgaatggtagccctacggatgagtttccccttgagaggggtttacgtcagggtgaccctctatc-ccctttttgtttttgttagcagcag 372  Q
    ||||||||||||||||| || ||||||||||||||||| |||||| |||||||| |||||||||| |||||||| ||||| ||||| || |||||||| |    
T  33514927 tcagttttagtgaatggcagtcctacggatgagtttcctcttgagcggggtttatgtcagggtgatcctctatctcccttcttgttcttcttagcagctg 33515026  T
Q  373 aagg 376  Q
    ||||    
T  33515027 aagg 33515030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 265 - 376
Target Start/End: Original strand, 13878212 - 13878324
Alignment:
Q  265 gccacggcctcagttttagtgaatggtagccctacggatgagtttccccttgagaggggtttacgtcagggtgaccctctatc-ccctttttgtttttgt 363  Q
    ||||| || ||||||||||||||||| || |||||||||||||| || |||||| |||||||||| |||||||| ||||| || ||||| ||||| ||||    
T  13878212 gccacagcttcagttttagtgaatggcagtcctacggatgagttccctcttgagcggggtttacggcagggtgatcctctttctcccttcttgttcttgt 13878311  T
Q  364 tagcagcagaagg 376  Q
    ||||||| |||||    
T  13878312 tagcagctgaagg 13878324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 271 - 355
Target Start/End: Original strand, 41664099 - 41664183
Alignment:
Q  271 gcctcagttttagtgaatggtagccctacggatgagtttccccttgagaggggtttacgtcagggtgaccctctatccccttttt 355  Q
    ||||||||| | ||||||||||| | ||| ||||||||||  |||||  ||||||||||||||||||||||| |||| |||||||    
T  41664099 gcctcagttcttgtgaatggtagtcatactgatgagtttcatcttgaacggggtttacgtcagggtgaccctttatctccttttt 41664183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 271 - 373
Target Start/End: Complemental strand, 7925795 - 7925692
Alignment:
Q  271 gcctcagttttagtgaatggtagccctacggatgagtttccccttgagaggggtttacgtcagggtgaccctctatccccttt-ttgtttttgttagcag 369  Q
    ||||||||| | |||||||| || ||||| ||||||||| | | |||  |||| |||||||||||||| |||||||| ||||| || ||||| || ||||    
T  7925795 gcctcagttcttgtgaatggcagtcctactgatgagttttctcgtgaacggggattacgtcagggtgatcctctatctcctttcttatttttattggcag 7925696  T
Q  370 caga 373  Q
    ||||    
T  7925695 caga 7925692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 280 - 370
Target Start/End: Complemental strand, 36493781 - 36493690
Alignment:
Q  280 ttagtgaatggtagccctacggatgagtttccccttgagaggggtttacgtcagggtgaccctctatcccctttt-tgtttttgttagcagc 370  Q
    ||||| ||||||||||| || |||||||||||  | |||||||| ||||| || ||||| ||||| ||||||||| | ||| ||||||||||    
T  36493781 ttagttaatggtagcccaactgatgagtttcctttagagagggggttacgccaaggtgatcctctttccccttttctttttctgttagcagc 36493690  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 376
Target Start/End: Complemental strand, 32267939 - 32267857
Alignment:
Q  295 cctacggatgagtttccccttgagaggggtttacgtcagggtgaccctctatc-ccctttttgtttttgttagcagcagaagg 376  Q
    ||||| ||||||||||  |||||  |||| |||||||||||||||||| |||| || ||||| ||||| || |||||||||||    
T  32267939 cctactgatgagtttcatcttgaacggggattacgtcagggtgaccctttatctccttttttatttttattggcagcagaagg 32267857  T

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Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 271 - 355
Target Start/End: Original strand, 24766158 - 24766242
Alignment:
Q  271 gcctcagttttagtgaatggtagccctacggatgagtttccccttgagaggggtttacgtcagggtgaccctctatccccttttt 355  Q
    ||||||||| | ||||||||||| ||||| ||||||||||| |||||  ||||||||||||||||||||||| |||| |||||||    
T  24766158 gcctcagttcttgtgaatggtagtcctaccgatgagtttcctcttgaacggggtttacgtcagggtgaccctttatctccttttt 24766242  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 274 - 376
Target Start/End: Original strand, 15955717 - 15955820
Alignment:
Q  274 tcagttttagtgaatggtagccctacggatgagtttccccttgagaggggtttacgtcagggtgaccctctatc-ccctttttgtttttgttagcagcag 372  Q
    ||||||||||||||||||||  | || ||||||||| |  ||||||||||| | ||||||||||||||||||||  ||||||||||||| ||||||| ||    
T  15955717 tcagttttagtgaatggtagttcaactgatgagttttctattgagaggggtcttcgtcagggtgaccctctatctgcctttttgtttttattagcagtag 15955816  T
Q  373 aagg 376  Q
    ||||    
T  15955817 aagg 15955820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 274 - 376
Target Start/End: Original strand, 17605068 - 17605171
Alignment:
Q  274 tcagttttagtgaatggtagccctacggatgagtttccccttgagaggggtttacgtcagggtgaccctctatccccttt-ttgtttttgttagcagcag 372  Q
    |||||||||||||| || || ||||| |||||||  || || ||| | ||||||||||||||||||||||| || ||||| |||||||||||||| ||||    
T  17605068 tcagttttagtgaacggcagtcctacagatgagtaccctctagagcgaggtttacgtcagggtgaccctctctctcctttcttgtttttgttagctgcag 17605167  T
Q  373 aagg 376  Q
    ||||    
T  17605168 aagg 17605171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 274 - 376
Target Start/End: Complemental strand, 13939124 - 13939021
Alignment:
Q  274 tcagttttagtgaatggtagccctacggatgagtttccccttgagaggggtttacgtcagggtgaccctctatcccctttt-tgtttttgttagcagcag 372  Q
    ||||| ||||||||||| || ||||| || ||||| || |||||  ||||||||||||| || || |||||||| |||||| ||||||| || |||||||    
T  13939124 tcagtgttagtgaatggaagtcctacagacgagttccctcttgaacggggtttacgtcaaggcgatcctctatcgccttttctgtttttattggcagcag 13939025  T
Q  373 aagg 376  Q
    ||||    
T  13939024 aagg 13939021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 274 - 376
Target Start/End: Original strand, 17576451 - 17576554
Alignment:
Q  274 tcagttttagtgaatggtagccctacggatgagtttccccttgagaggggtttacgtcagggtgaccctctatc-ccctttttgtttttgttagcagcag 372  Q
    ||||||||||| ||||| || ||||| |||||||| ||  | ||| | |||||||| |||||||||||||| || || ||||||||||||||||| || |    
T  17576451 tcagttttagtcaatggcagtcctacagatgagttccctttagagcgaggtttacgacagggtgaccctctttctccttttttgtttttgttagctgctg 17576550  T
Q  373 aagg 376  Q
    ||||    
T  17576551 aagg 17576554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 274 - 376
Target Start/End: Original strand, 18681308 - 18681411
Alignment:
Q  274 tcagttttagtgaatggtagccctacggatgagtttccccttgagaggggtttacgtcagggtgaccctctatc-ccctttttgtttttgttagcagcag 372  Q
    ||||| ||||||||||| || ||||| |||||||| |  |||||  ||||| |  ||||||||||||||||||| || ||||||||||| |||||| |||    
T  18681308 tcagtgttagtgaatggcagtcctactgatgagttccatcttgaatggggtctcggtcagggtgaccctctatcgccttttttgtttttattagcatcag 18681407  T
Q  373 aagg 376  Q
    ||||    
T  18681408 aagg 18681411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 361
Target Start/End: Complemental strand, 2555013 - 2554923
Alignment:
Q  271 gcctcagttttagtgaatggtagccctacggatgagtttccccttgagaggggtttacgtcagggtgaccctctatcccctttttgttttt 361  Q
    ||||||||| | ||||||||||| ||||| |||||||||   |||||  |||| |||||||||||||||||  |||| ||||||| |||||    
T  2555013 gcctcagttcttgtgaatggtagtcctactgatgagttttatcttgaacggggattacgtcagggtgacccattatctccttttttttttt 2554923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 355
Target Start/End: Complemental strand, 13086934 - 13086868
Alignment:
Q  289 ggtagccctacggatgagtttccccttgagaggggtttacgtcagggtgaccctctatccccttttt 355  Q
    ||||||||||| ||||||||||| ||| | |||||| | |||||||| |||||||| || |||||||    
T  13086934 ggtagccctaccgatgagtttccgcttaaaaggggtctccgtcagggggaccctctgtctccttttt 13086868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 274 - 376
Target Start/End: Original strand, 25856173 - 25856276
Alignment:
Q  274 tcagttttagtgaatggtagccctacggatgagtttccccttgagaggggtttacgtcagggtgaccctctatc-ccctttttgtttttgttagcagcag 372  Q
    ||||||||||||||||| || ||||| |||||||| ||  | ||| | |||||||| |||||||||||||| || || ||||||||||||||||| || |    
T  25856173 tcagttttagtgaatggcagtcctacagatgagttcccgttagagcgaggtttacgacagggtgaccctctttctccttttttgtttttgttagctgctg 25856272  T
Q  373 aagg 376  Q
    ||||    
T  25856273 aagg 25856276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 274 - 376
Target Start/End: Complemental strand, 33171064 - 33170961
Alignment:
Q  274 tcagttttagtgaatggtagccctacggatgagtttccccttgagaggggtttacgtcagggtgaccctctatc-ccctttttgtttttgttagcagcag 372  Q
    ||||| ||||||||||| |||||||| || ||||| || |||||  |||||||||||||||| || |||||||| || |||||||||||  | |||||||    
T  33171064 tcagtgttagtgaatggcagccctacagacgagttccctcttgaacggggtttacgtcagggcgatcctctatcgccttttttgtttttactggcagcag 33170965  T
Q  373 aagg 376  Q
    ||||    
T  33170964 aagg 33170961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 281 - 361
Target Start/End: Original strand, 27164836 - 27164917
Alignment:
Q  281 tagtgaatggtagccctacggatgagtttccccttgagaggggtttacgtcagggtgaccctctatc-ccctttttgttttt 361  Q
    |||||||||| |||||||| || |||||||  |||||||||||||||| |||  |||| |||||||| ||||||||||||||    
T  27164836 tagtgaatggcagccctactgacgagtttcatcttgagaggggtttacttcaatgtgatcctctatctccctttttgttttt 27164917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 377
Target Start/End: Original strand, 28534407 - 28534514
Alignment:
Q  271 gcctcagttttagtgaatggtagccctacggatgagtttccccttgagaggggtttacgtcagggtgaccctctatc-ccctttttgtttttgttagcag 369  Q
    ||||||||| | ||||||||  | ||||| ||||||||| | |||||  |||||||||| |||||||||||| |||| || ||||| ||||| || ||||    
T  28534407 gcctcagttcttgtgaatggatgtcctactgatgagttttctcttgaacggggtttacgccagggtgaccctttatctccttttttatttttattggcag 28534506  T
Q  370 cagaagga 377  Q
    ||||||||    
T  28534507 cagaagga 28534514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 373
Target Start/End: Complemental strand, 42515129 - 42515026
Alignment:
Q  271 gcctcagttttagtgaatggtagccctacggatgagtttccccttgagaggggtttacgtcagggtgaccctctatccccttt-ttgtttttgttagcag 369  Q
    ||||||||| | |||||||| || ||||| ||||||||| | |||||  |||| |||||||||||||| |||||||| ||||| || ||||| || ||||    
T  42515129 gcctcagttcttgtgaatggcagtcctactgatgagttttctcttgaacggggattacgtcagggtgatcctctatctcctttcttatttttattggcag 42515030  T
Q  370 caga 373  Q
    ||||    
T  42515029 caga 42515026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 379
Target Start/End: Complemental strand, 38358861 - 38358767
Alignment:
Q  286 aatggtagccctacggatgagtttccccttgagaggggtttacgtcagggtgaccctctat-cccctttttgtttttgttagcagcagaaggact 379  Q
    ||||| |||||||| ||||||||||   || |||| |||||||||||||| || ||||| | |||||||||||||||| |||| || ||||||||    
T  38358861 aatggcagccctactgatgagtttcattttcagagaggtttacgtcagggggatcctctgtccccctttttgtttttgctagcggctgaaggact 38358767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 355
Target Start/End: Complemental strand, 23239778 - 23239706
Alignment:
Q  283 gtgaatggtagccctacggatgagtttccccttgagaggggtttacgtcagggtgaccctctatccccttttt 355  Q
    |||||||| || ||||| ||||||||||  |||||  |||| |||||||||||||||||| |||| |||||||    
T  23239778 gtgaatgggagtcctactgatgagtttcatcttgaacggggattacgtcagggtgaccctttatctccttttt 23239706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 277 - 373
Target Start/End: Original strand, 47621813 - 47621910
Alignment:
Q  277 gttttagtgaatggtagccctacggatgagtttccccttgagaggggtttacgtcagggtgaccctctatc-ccctttttgtttttgttagcagcaga 373  Q
    |||||||||||||||||||| || || |||||  | |||||| ||||| | || ||||||| ||||||||| || ||||||||||| |||||||||||    
T  47621813 gttttagtgaatggtagcccaactgaggagttctctcttgagcggggtcttcggcagggtggccctctatctccatttttgtttttattagcagcaga 47621910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 274 - 376
Target Start/End: Complemental strand, 19171515 - 19171412
Alignment:
Q  274 tcagttttagtgaatggtagccctacggatgagtttccccttgagaggggtttacgtcagggtgaccctctat-cccctttttgtttttgttagcagcag 372  Q
    ||||| ||||||||||||||  | ||  | |||||| | |||||| ||||| | || |||||||| ||| ||| ||||||||||||||| ||||||||||    
T  19171515 tcagtattagtgaatggtagttcgactaaggagttttctcttgagcggggtcttcggcagggtgatcctttatgcccctttttgtttttattagcagcag 19171416  T
Q  373 aagg 376  Q
    ||||    
T  19171415 aagg 19171412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 373
Target Start/End: Original strand, 104574 - 104677
Alignment:
Q  271 gcctcagttttagtgaatggtagccctacggatgagtttccccttgagaggggtttacgtcagggtgaccctctatccccttt-ttgtttttgttagcag 369  Q
    ||||||||| | |||||||| || ||||| ||||||||| | |||||  |||| |||||||||||||| |||||||| ||||| || ||||| || ||||    
T  104574 gcctcagttcttgtgaatggcagtcctactgatgagttttctcttgaacggggattacgtcagggtgatcctctatctcctttcttatttttattggcag 104673  T
Q  370 caga 373  Q
    ||||    
T  104674 caga 104677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 373
Target Start/End: Original strand, 4936859 - 4936962
Alignment:
Q  271 gcctcagttttagtgaatggtagccctacggatgagtttccccttgagaggggtttacgtcagggtgaccctctatccccttt-ttgtttttgttagcag 369  Q
    ||||||||| | |||||||| || ||||| ||||||||| | |||||  |||| |||||||||||||| |||||||| ||||| || ||||| || ||||    
T  4936859 gcctcagttcttgtgaatggcagtcctactgatgagttttctcttgaacggggattacgtcagggtgatcctctatctcctttcttatttttattggcag 4936958  T
Q  370 caga 373  Q
    ||||    
T  4936959 caga 4936962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 379
Target Start/End: Complemental strand, 18768797 - 18768703
Alignment:
Q  286 aatggtagccctacggatgagtttccccttgagaggggtttacgtcagggtgaccctctatcccc-tttttgtttttgttagcagcagaaggact 379  Q
    ||||| |||||||| ||||||||||   || |||| |||||||||||||| || ||||| ||||| |||||||||||| |||| || ||||||||    
T  18768797 aatggcagccctactgatgagtttcattttcagagaggtttacgtcagggggatcctctgtccccttttttgtttttgctagcggctgaaggact 18768703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 376
Target Start/End: Complemental strand, 29969371 - 29969277
Alignment:
Q  283 gtgaatggtagccctacggatgagtttccccttgagaggggtttacgtcagggtgaccctctatc-ccctttttgtttttgttagcagcagaagg 376  Q
    |||||||| || ||||| ||||||||||  |||||  | || |||||||||||||||||| |||| || ||||| ||||| || |||||||||||    
T  29969371 gtgaatggcagtcctactgatgagtttcatcttgaacgaggattacgtcagggtgaccctttatctccttttttatttttattggcagcagaagg 29969277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 376
Target Start/End: Complemental strand, 4649 - 4555
Alignment:
Q  283 gtgaatggtagccctacggatgagtttccccttgagaggggtttacgtcagggtgaccctctatc-ccctttttgtttttgttagcagcagaagg 376  Q
    |||||||| || ||||| ||||||||||  || ||  |||| |||||||||||||||||| |||| || ||||| ||||| || |||||||||||    
T  4649 gtgaatggcagtcctactgatgagtttcatctcgaacggggattacgtcagggtgaccctttatctccttttttatttttattggcagcagaagg 4555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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