View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0766_low_30 (Length: 372)
Name: NF0766_low_30
Description: NF0766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0766_low_30 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 6 - 364
Target Start/End: Complemental strand, 7117584 - 7117243
Alignment:
| Q |
6 |
attaggttaatgaagttattgaaagaaaagaacgaggactttcagaatagctacagcaacgatgtaaaagctctatcaaattcttcaacaaacaataaaa |
105 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7117584 |
attatgttaatgaagttattgaaagaaaagaacgaggactttcagaatagctacagcaacgatgtaaaagctctatcaaattcttcaacaaacaataaaa |
7117485 |
T |
|
| Q |
106 |
tnnnnnnnnnnctctattaaattgcttcgttacattacactcttgaaacaaattaaccaggaaacac--gttgatttgcatacatcaaacaaacttcgta |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7117484 |
-----aaaaaactctattaaattgcttcgttacattacactcttgaaacaaattaaccaggaaacacacgttgatttgcatacatcaaacaaacttcgta |
7117390 |
T |
|
| Q |
204 |
aatagcaacatgagtgagtgagaactccaaaaacgaacaccgctattggttcaacactagtcataatactacattatatattgatgtgacataaatatat |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
7117389 |
aatagcaacatgagtgagtgagaactccaaaaacgaacaccgcttttggttcaacactagtcatactactacattatat--------------tatatat |
7117304 |
T |
|
| Q |
304 |
acaaggtttagtgcttagttagatttatatgatcaatcactaacttcatctatagggttca |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7117303 |
acaaggtttagtgcttagttagatttatatgatcaatcactaacttcatctacagggttca |
7117243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 5890 times since January 2019
Visitors: 4860