View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0766_low_34 (Length: 331)
Name: NF0766_low_34
Description: NF0766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0766_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 96 - 302
Target Start/End: Original strand, 2908369 - 2908580
Alignment:
| Q |
96 |
tatggtttataatattattgacatttcgctatattcccag-----gcaaataggattacttggtatcctgagattgtgacctcttattcgatgaagctgg |
190 |
Q |
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| T |
2908369 |
tatggtttataatattattggcatttcgctatattcccagttaaagcaaataggattacttggtatcctgagattgtgacctcttattcgatgaagtcgg |
2908468 |
T |
|
| Q |
191 |
catataggctagttatggctcattttgtggacacaagtgaacttcatattgctaggtgttaaatcttatctagaatttgcagattccaccttgtcttaag |
290 |
Q |
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| T |
2908469 |
catataggctagttatcgctcattttgtggacacaagtgaacttcatattgctaggtgttaaatcttatctagaatttgcagattccaccttgtcttaag |
2908568 |
T |
|
| Q |
291 |
ttgtttctctgc |
302 |
Q |
| |
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| |||||||||| |
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| T |
2908569 |
tagtttctctgc |
2908580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 96 - 300
Target Start/End: Original strand, 1517034 - 1517244
Alignment:
| Q |
96 |
tatggtttataatattattgacatttcgctatattcccaggcaaa-----taggattacttggtatcctgagattgtgacctcttattcgatgaagctgg |
190 |
Q |
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||||| ||||||||||| ||| |||| ||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||| ||||||| || |
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| T |
1517034 |
tatggcttataatattaatgatattttgctatattcccagttaaaaaaaataggattacttggtatcctgagattgtcgcctcttatttgatgaagtcgg |
1517133 |
T |
|
| Q |
191 |
catataggctagttatggctcattttgtggacacaagtgaacttcatattgctaggtgtt-aaatcttatctagaatttgcagattccaccttgtcttaa |
289 |
Q |
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|||||||||||| || ||||||| ||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
1517134 |
catataggctagctacggctcatcttgtggacacaagtgaacttcatattgctcggtgttggaatcttatttagaatttgcagattccaccttgtcttaa |
1517233 |
T |
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| Q |
290 |
gttgtttctct |
300 |
Q |
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||||||||||| |
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| T |
1517234 |
gttgtttctct |
1517244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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