View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0766_low_38 (Length: 314)
Name: NF0766_low_38
Description: NF0766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0766_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 85 - 310
Target Start/End: Original strand, 5469337 - 5469555
Alignment:
| Q |
85 |
acagacactagatctgcacccaaaatcttaaggtaatatgtatatgagtacctatct-acatccaacattgaccattcatttatagtcgatgttgaatta |
183 |
Q |
| |
|
||||||||| ||| ||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5469337 |
acagacactggatatgcacccaaaatcataaggtaat--------gagtacctatcttacatccaacattgaccattcatttatagtcgatgttgaatta |
5469428 |
T |
|
| Q |
184 |
accactcacacttgaattcaacaatccaannnnnnnttatacacccaacattgaacttaatttggaaggaaccatttacacttgaattcaacaatcttac |
283 |
Q |
| |
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|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5469429 |
accactcacacttgtattcaacaatccaacccccccttatacacccaacattgaacttaatttggaaggaaccatttacacttgaattcaacaatcttac |
5469528 |
T |
|
| Q |
284 |
cctcaagagagtcttctacatcttata |
310 |
Q |
| |
|
||||||| ||||||||||||||||||| |
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|
| T |
5469529 |
cctcaagtgagtcttctacatcttata |
5469555 |
T |
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