View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0766_low_39 (Length: 311)

Name: NF0766_low_39
Description: NF0766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0766_low_39
NF0766_low_39
[»] chr3 (1 HSPs)
chr3 (30-305)||(31981769-31982044)
[»] chr4 (2 HSPs)
chr4 (176-260)||(20634519-20634603)
chr4 (178-222)||(22466401-22466445)
[»] chr1 (3 HSPs)
chr1 (178-228)||(41087933-41087983)
chr1 (178-228)||(41092674-41092724)
chr1 (176-260)||(3400017-3400101)
[»] chr8 (1 HSPs)
chr8 (179-257)||(1807278-1807356)
[»] chr7 (1 HSPs)
chr7 (178-222)||(47405118-47405162)
[»] chr2 (1 HSPs)
chr2 (176-272)||(42494490-42494586)


Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 30 - 305
Target Start/End: Original strand, 31981769 - 31982044
Alignment:
Q  30 ctttgacatatggaagttttaatagaatatgaaaattaaagacgatacgaaggaaatgtagaaaccatccgccgttatttgacgattatcatgctttatg 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31981769 ctttgacatatggaagttttaatagaatatgaaaattaaagacgatacgaaggaaatgtagaaaccatccgccgttatttgacgattatcatgctttatg 31981868  T
Q  130 cctaacttggagccaatcgcatatgcaataagagtgtggacagttgtggaggaccataccacatagactttactatactctgactattcaacaagtccat 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31981869 cctaacttggagccaatcgcatatgcaataagagtgtggacagttgtggaggaccataccacatagactttactatactctgactattcaacaagtccat 31981968  T
Q  230 cttagtttgatcgtccaggtcacatgagctcaacttacaacatatatgtctaactcaacttgatcattcatctcac 305  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31981969 ctcagtttgatcgtccaggtcacatgagctcaacttacaacatatatgtctaactcaacttgatcattcatgtcac 31982044  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 176 - 260
Target Start/End: Original strand, 20634519 - 20634603
Alignment:
Q  176 tggaggaccataccacatagactttactatactctgactattcaacaagtccatcttagtttgatcgtccaggtcacatgagctc 260  Q
    |||||||||||||||||| |||| | ||||||  ||| ||||||||| || || || ||||||||||| |||||||| |||||||    
T  20634519 tggaggaccataccacatggactctcctatacattgaatattcaacatgtacaactcagtttgatcgttcaggtcacgtgagctc 20634603  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 22466445 - 22466401
Alignment:
Q  178 gaggaccataccacatagactttactatactctgactattcaaca 222  Q
    |||||||||||||||| |||||||||||||  |||||||||||||    
T  22466445 gaggaccataccacatggactttactatacattgactattcaaca 22466401  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 41087983 - 41087933
Alignment:
Q  178 gaggaccataccacatagactttactatactctgactattcaacaagtcca 228  Q
    |||||||||||||||| |||||||||||||  ||||||||||||| |||||    
T  41087983 gaggaccataccacatggactttactatacattgactattcaacatgtcca 41087933  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 41092724 - 41092674
Alignment:
Q  178 gaggaccataccacatagactttactatactctgactattcaacaagtcca 228  Q
    |||||||||||||||| |||||||||||||  ||||||||||||| |||||    
T  41092724 gaggaccataccacatggactttactatacattgactattcaacatgtcca 41092674  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 260
Target Start/End: Original strand, 3400017 - 3400101
Alignment:
Q  176 tggaggaccataccacatagactttactatactctgactattcaacaagtccatcttagtttgatcgtccaggtcacatgagctc 260  Q
    |||||||||||||||| | |||| |  |||||  ||||||||||||| || || ||||| |||||||| |||||||| |||||||    
T  3400017 tggaggaccataccacgtggactcttatatacattgactattcaacatgtacaacttagcttgatcgttcaggtcacgtgagctc 3400101  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 257
Target Start/End: Original strand, 1807278 - 1807356
Alignment:
Q  179 aggaccataccacatagactttactatactctgactattcaacaagtccatcttagtttgatcgtccaggtcacatgag 257  Q
    ||||||||||||| | |||| | ||||||  ||||||||||||| || ||||| | ||||||| | |||||||||||||    
T  1807278 aggaccataccacgtggactcttctataccttgactattcaacatgtacatctcaatttgatcattcaggtcacatgag 1807356  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 47405162 - 47405118
Alignment:
Q  178 gaggaccataccacatagactttactatactctgactattcaaca 222  Q
    ||||||||||||||||  ||||||||||||  |||||||||||||    
T  47405162 gaggaccataccacatgaactttactatacattgactattcaaca 47405118  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 272
Target Start/End: Complemental strand, 42494586 - 42494490
Alignment:
Q  176 tggaggaccataccacatagactttactatactctgactattcaacaagtccatcttagtttgatcgtccaggtcacatgagctcaacttacaacat 272  Q
    |||||||||||| |||||| ||| || |||||  |||||||||||||  || | ||||| |||||| |||| || ||||||||| ||| | ||||||    
T  42494586 tggaggaccatatcacataaactctattatacattgactattcaacatatctagcttagcttgatcatccatgttacatgagcttaacattcaacat 42494490  T

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