View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0766_low_44 (Length: 277)
Name: NF0766_low_44
Description: NF0766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0766_low_44 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 27 - 236
Target Start/End: Complemental strand, 4194708 - 4194497
Alignment:
| Q |
27 |
agaaggtaaaagttaaattcatatgcatggacttcaagttgtttgcccccttgctgagaataaattctaacttgtttcctccgtactttcacattaggtc |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4194708 |
agaaggtaaaagttaaattcatatgcatggacttcaagttgtttgcccccttgctgagaataaattctaacttgtttcctccgtactttcacattaggtc |
4194609 |
T |
|
| Q |
127 |
actcccaacaacgttggcattgcgaaggttgctccagcgtatca--tttacaccccttctgagctggaagctgtgataagtcgcctataatttccatcta |
224 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4194608 |
actcccaacaacgttgacatagcgaaggttgctccagcatatcatctttacaccttttctgagctggaagctgtgataagtcgcctataatttccatcta |
4194509 |
T |
|
| Q |
225 |
tttgcgtgattt |
236 |
Q |
| |
|
|||||||||||| |
|
|
| T |
4194508 |
tttgcgtgattt |
4194497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 57 - 227
Target Start/End: Original strand, 50772552 - 50772725
Alignment:
| Q |
57 |
acttcaagttgtttgccccct-tgctgagaataaattctaacttgtttcctccgtactttcacattaggtcactcccaacaacgttggcattgcgaaggt |
155 |
Q |
| |
|
||||| |||||||||||||| | ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||| | ||| |
|
|
| T |
50772552 |
acttccagttgtttgccccccctactgagaataaattctaacttgtttcttctgtactttcacattaggtcactcccaacaacgttgacattgccagggt |
50772651 |
T |
|
| Q |
156 |
tgctccagcgtatca--tttacaccccttctgagctggaagctgtgataagtcgcctataatttccatctattt |
227 |
Q |
| |
|
||||||||||||||| |||| ||||| |||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
50772652 |
tgctccagcgtatcatctttataccccgtctgaggtggaagctgtgataagtcgcctatgatttccatctattt |
50772725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 5651 times since January 2019
Visitors: 4858