View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0766_low_46 (Length: 277)
Name: NF0766_low_46
Description: NF0766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0766_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 13 - 248
Target Start/End: Complemental strand, 46873336 - 46873101
Alignment:
| Q |
13 |
aatataaaacagtagaattatatgataaaaccaaaaccaataatcaaaatgagttattgttaccttcttcaccatgagcaaagtgacaattctttccaaa |
112 |
Q |
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| T |
46873336 |
aatataaaacagtagaattatatgataaaaccaaaaccaataatcaaaatgagttattgttaccttcttcaccatgagcaaagtgacaattctttccaaa |
46873237 |
T |
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| Q |
113 |
ggaacaatatcccgtatccttccacttgagacacagcttagtcttccgataagtgcccctaaattgtgcaggatcttcatgaaggaatttacacttatct |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46873236 |
ggaacaatatcccgtatccttccacttgagacacagcttagtcttccgataagtgcccctaaattgtgcaggatcttcatgaaggaatttacacttatct |
46873137 |
T |
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| Q |
213 |
ccatagggacatttctccccattgcaatacttcttg |
248 |
Q |
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| T |
46873136 |
ccatagggacatttctccccattgcaatacttcttg |
46873101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 16 - 168
Target Start/End: Complemental strand, 46890745 - 46890593
Alignment:
| Q |
16 |
ataaaacagtagaattatatgataaaaccaaaaccaataatcaaaatgagttattgttaccttcttcaccatgagcaaagtgacaattctttccaaagga |
115 |
Q |
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||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||| |
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| T |
46890745 |
ataaagcaatagaattatatgataaaaccaaaaccaataagcaaaatgagttattgttaccttcttcaccatgagcaaagagacagttcattccaaagga |
46890646 |
T |
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| Q |
116 |
acaatatcccgtatccttccacttgagacacagcttagtcttccgataagtgc |
168 |
Q |
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| T |
46890645 |
acaatatcctgtatgcttccaattgcgacacagcttagtcttccgataagtgc |
46890593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 169 - 248
Target Start/End: Complemental strand, 46890502 - 46890423
Alignment:
| Q |
169 |
ccctaaattgtgcaggatcttcatgaaggaatttacacttatctccatagggacatttctccccattgcaatacttcttg |
248 |
Q |
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||||||| |||||||||||||||||||||||| |||| ||||||||||| ||||||| ||||||||||||||| |||||| |
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| T |
46890502 |
ccctaaactgtgcaggatcttcatgaaggaatatacagttatctccatatggacattcctccccattgcaataattcttg |
46890423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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