View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0766_low_49 (Length: 264)
Name: NF0766_low_49
Description: NF0766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0766_low_49 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 27 - 264
Target Start/End: Complemental strand, 1554174 - 1553937
Alignment:
| Q |
27 |
caaaggagtcataaaagagaaaactgtagcataatgactccatctatattctctgctacaattggttctaaccaaaatcttcaaatttacaagtcataaa |
126 |
Q |
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| T |
1554174 |
caaaggagtcataaaagagaaaactgtagcataatgactccatctatattctctgctacaattggttctaaccaaaatcttcaaatttacaagtcataaa |
1554075 |
T |
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| Q |
127 |
cttgcaagttaatcaaaattagtaatcaagttggactattaaactaaattgtaatctttccaattccaaccaaagaagacgatcatatctacatatttac |
226 |
Q |
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| T |
1554074 |
cttgcaagttaatcaaaattagtaatcaagtttgactattaaactaaattgtaatctttccaattccaaccaaagaagacgatcatatctacatatttac |
1553975 |
T |
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| Q |
227 |
aaaattcagtagttaattaattagtgcagatcgacaaa |
264 |
Q |
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| T |
1553974 |
aaaattcagtggttaattaattagtgcagatcgacaaa |
1553937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 211
Target Start/End: Complemental strand, 51114366 - 51114323
Alignment:
| Q |
168 |
aactaaattgtaatctttccaattccaaccaaagaagacgatca |
211 |
Q |
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||||||||||| | ||||||||||||||||||||||||| |||| |
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| T |
51114366 |
aactaaattgttacctttccaattccaaccaaagaagaccatca |
51114323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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