View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0766_low_6 (Length: 577)
Name: NF0766_low_6
Description: NF0766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0766_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 106 - 571
Target Start/End: Original strand, 40731190 - 40731655
Alignment:
| Q |
106 |
ttgtacttgaaaattgaaataaggatgctattgccaatttaaggtatt---tttaaacttatggaatggtagctttttgtctctttatggtgacatacta |
202 |
Q |
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| T |
40731190 |
ttgtacttgaaaattgaaataaggatgctattgccaatttaaggtattgtttttaaacttatggaatggtagctttttgtctctttatggtgacatacta |
40731289 |
T |
|
| Q |
203 |
gcatgttttagatggtgcatactattacnnnnnnnnnnncatttctgttttgttcaggtgatgcttactattatcagtcatgtatatttcgtttttgctt |
302 |
Q |
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| T |
40731290 |
gcatgttttagatggtgcatactattactttttttt---catttctgttttgttcaggtgatgcttactattatcagtcatgtatatttcgtttttgctt |
40731386 |
T |
|
| Q |
303 |
caagagatatacgaatatcattctgattttgctgtgcttttgttgcagtgtgctaaaatgatacgacatacaagaatattgtatttattctattggtata |
402 |
Q |
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| T |
40731387 |
caagagatatacgaatatcattctgattttgctgtgcttttgttgcagtgtgctaaaatgatacgacatacaagactattgtatttattctattggtata |
40731486 |
T |
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| Q |
403 |
cgtgtgtttcttgtattttgttgagaatattctgtcatatatttttaaaaatatattggtgtgaatttttccttccacttgagagattccatctatcctt |
502 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40731487 |
cgtgtgtttcttgtattttgttgagaatattctgtcatatattttttaaaatatattggtgtgaatttttccttccacttgagagattccatctgtcctt |
40731586 |
T |
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| Q |
503 |
tatgaacagactatatatgcccttatgttacgtgtcatattatcatatagttgcgggtattcttttctg |
571 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40731587 |
tatgaacagactatatatgcccttatgttacgtgtcatattatcatatagttgcgggtattcttttctg |
40731655 |
T |
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