View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0766_low_61 (Length: 226)

Name: NF0766_low_61
Description: NF0766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0766_low_61
NF0766_low_61
[»] chr2 (25 HSPs)
chr2 (1-219)||(9026675-9026894)
chr2 (1-225)||(8973195-8973420)
chr2 (1-211)||(9020744-9020955)
chr2 (1-213)||(8984588-8984801)
chr2 (1-225)||(8992031-8992256)
chr2 (1-226)||(9016377-9016604)
chr2 (1-226)||(9030282-9030505)
chr2 (27-221)||(9023338-9023529)
chr2 (1-221)||(8988342-8988563)
chr2 (42-219)||(9031942-9032120)
chr2 (36-193)||(8979237-8979395)
chr2 (1-112)||(9008018-9008129)
chr2 (1-115)||(32918074-32918187)
chr2 (1-184)||(2841017-2841201)
chr2 (1-120)||(30731997-30732115)
chr2 (29-116)||(43850042-43850129)
chr2 (1-112)||(30733985-30734095)
chr2 (80-219)||(8975584-8975724)
chr2 (164-220)||(9007956-9008012)
chr2 (48-107)||(19232445-19232504)
chr2 (129-221)||(8996246-8996339)
chr2 (1-102)||(10763878-10763978)
chr2 (42-107)||(6471749-6471813)
chr2 (42-105)||(35701893-35701956)
chr2 (71-106)||(39814115-39814150)
[»] chr1 (20 HSPs)
chr1 (1-226)||(33987951-33988177)
chr1 (1-120)||(14654340-14654458)
chr1 (1-120)||(14664131-14664249)
chr1 (1-120)||(14669709-14669827)
chr1 (1-120)||(14706077-14706195)
chr1 (1-120)||(14708567-14708685)
chr1 (1-116)||(14683743-14683857)
chr1 (1-120)||(14716280-14716398)
chr1 (1-116)||(38175530-38175644)
chr1 (1-119)||(14674471-14674588)
chr1 (1-119)||(14679849-14679966)
chr1 (1-118)||(28366198-28366315)
chr1 (1-109)||(14652525-14652632)
chr1 (1-109)||(14662316-14662423)
chr1 (28-116)||(14676625-14676713)
chr1 (1-116)||(14681592-14681706)
chr1 (2-112)||(14667112-14667221)
chr1 (1-106)||(11872481-11872585)
chr1 (42-103)||(37422175-37422236)
chr1 (42-113)||(28698549-28698620)
[»] chr8 (12 HSPs)
chr8 (1-184)||(41841152-41841335)
chr8 (1-115)||(44878977-44879090)
chr8 (1-115)||(44880831-44880944)
chr8 (1-109)||(40054312-40054419)
chr8 (42-184)||(42555123-42555266)
chr8 (23-107)||(37679757-37679841)
chr8 (22-109)||(37682057-37682144)
chr8 (47-112)||(10944444-10944509)
chr8 (42-184)||(42220886-42221027)
chr8 (42-185)||(42091944-42092087)
chr8 (66-116)||(42872514-42872564)
chr8 (42-92)||(44582870-44582920)
[»] chr4 (13 HSPs)
chr4 (1-184)||(3461142-3461325)
chr4 (1-184)||(11652392-11652575)
chr4 (1-117)||(49106529-49106644)
chr4 (1-116)||(49108633-49108747)
chr4 (1-118)||(50077199-50077315)
chr4 (1-108)||(26998740-26998846)
chr4 (2-108)||(26984668-26984773)
chr4 (47-108)||(48205832-48205893)
chr4 (1-81)||(21503706-21503785)
chr4 (49-102)||(6431957-6432010)
chr4 (42-107)||(41013586-41013651)
chr4 (63-102)||(26982549-26982588)
chr4 (68-104)||(34481155-34481191)
[»] chr5 (6 HSPs)
chr5 (1-184)||(1716451-1716634)
chr5 (1-150)||(3643599-3643747)
chr5 (1-116)||(7524961-7525075)
chr5 (1-105)||(4103249-4103352)
chr5 (1-107)||(16037861-16037964)
chr5 (42-102)||(19261156-19261216)
[»] chr6 (5 HSPs)
chr6 (1-118)||(10795890-10796006)
chr6 (1-118)||(10791652-10791768)
chr6 (42-109)||(30521242-30521309)
chr6 (42-107)||(8875691-8875756)
chr6 (2-102)||(21216032-21216131)
[»] chr3 (1 HSPs)
chr3 (61-107)||(15758562-15758608)
[»] chr7 (2 HSPs)
chr7 (1-109)||(27134511-27134618)
chr7 (28-103)||(8128149-8128224)


Alignment Details
Target: chr2 (Bit Score: 164; Significance: 8e-88; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 9026894 - 9026675
Alignment:
Q  1 aaaaaagtaatttaatactgttgtggcccattgggccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9026894 aaaaaagtaatttaatactgttgtgacccattgggccactaatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 9026795  T
Q  101 aaggtatgagttgaaagatgttctcgcttatggttttatatatcacatccc-tcacttgctttcatgaacaaccgatgtgggacttttttgaaatagctt 199  Q
    ||||||||||||||||||||   ||||||||| ||||||||| |||||||| |||||||||||| |||||||||||| |||||||||||||||| |||||    
T  9026794 aaggtatgagttgaaagatgaattcgcttatgcttttatataccacatcccttcacttgctttcttgaacaaccgatatgggacttttttgaaacagctt 9026695  T
Q  200 gcttggtaaactctcttcct 219  Q
    |||||||| ||| |||||||    
T  9026694 gcttggtagactttcttcct 9026675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 8973420 - 8973195
Alignment:
Q  1 aaaaaagtaatttaatactgttgtggcccattgggccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 100  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  8973420 aaaaaagtaatttaatattgttgtgacccattgggccactaatcagatattaaactaataagaacagatactacacttgatcttagccaaaaggccgaga 8973321  T
Q  101 aaggtatgagttgaaagatgttctcgcttatggttttatatatcacatccc-tcacttgctttcatgaacaaccgatgtgggacttttttgaaatagctt 199  Q
    ||||||||||||||||||||  |||||||||| |||||||||||||||||| |||||| |||||  ||| || |||||||| |||||||||||| || ||    
T  8973320 aaggtatgagttgaaagatgaactcgcttatgcttttatatatcacatcccttcacttactttctggaataatcgatgtggaacttttttgaaacagttt 8973221  T
Q  200 gcttggtaaactctcttcctaacact 225  Q
    |||||||| |||||||||||||||||    
T  8973220 gcttggtagactctcttcctaacact 8973195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 9020955 - 9020744
Alignment:
Q  1 aaaaaagtaatttaatactgttgtggcccattgggccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 100  Q
    ||||||||||||||||||||| ||| |||||||||||||   ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  9020955 aaaaaagtaatttaatactgtagtgacccattgggccacatctcagatattaaattgataagaacagatactacacttgatcttagccaaaaggccgaga 9020856  T
Q  101 aaggtatgagttgaaagatgttctcgcttatggttttatatatcacatcc-ctcacttgctttcatgaacaaccgatgtgggacttttttgaaatagctt 199  Q
    || |||||| ||||||||||  ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9020855 aatgtatgaattgaaagatgaactcgcttatggttttatatatcacatccattcacttgctttcatgaacaaccgatgtaggacttttttgaaatagctt 9020756  T
Q  200 gcttggtaaact 211  Q
    ||||||||||||    
T  9020755 gcttggtaaact 9020744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 8984801 - 8984588
Alignment:
Q  1 aaaaaagtaatttaatactgttgtggcccattgggccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 100  Q
    ||||||| ||||||| ||  ||||| |||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  8984801 aaaaaagcaatttaaaaccattgtgacccattaggccactaatcaaatattaaactaataagaacaaatactacacttgatcttagccaaaaggccgaga 8984702  T
Q  101 aaggtatgagttgaaagatgttctcgcttatggttttatatatcacatccc-tcacttgctttcatgaacaaccgatgtgggacttttttgaaatagctt 199  Q
    |||||||||||||||| |||  || ||||||| |||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||    
T  8984701 aaggtatgagttgaaatatgaacttgcttatgcttttatatatcacatcccttcacttgttttcttgaacaaccgatgtgggacttttttgaaatagctt 8984602  T
Q  200 gcttggtaaactct 213  Q
    | |||||| |||||    
T  8984601 gtttggtagactct 8984588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 8992256 - 8992031
Alignment:
Q  1 aaaaaagtaatttaatactgttgtggcccattgggccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 100  Q
    ||||||||||||||||| | ||||| ||||||||||||||||||| ||||| |||| ||||||||| |||||||||||||||||||||||||| | ||||    
T  8992256 aaaaaagtaatttaatattattgtgacccattgggccactaatcagatattgaactcataagaacatatactacacttgatcttagccaaaagactgaga 8992157  T
Q  101 aaggtatgagttgaaagatgttctcgcttatggttttatatatcacatccc-tcacttgctttcatgaacaaccgatgtgggacttttttgaaatagctt 199  Q
    |||| ||||||| ||||| |  |||||||||| |||||||||||||||||| |||||| ||||| |||| |||| ||||||||||||||||||| || ||    
T  8992156 aaggcatgagttaaaagacgaactcgcttatgcttttatatatcacatcccttcacttactttcttgaataaccaatgtgggacttttttgaaacagttt 8992057  T
Q  200 gcttggtaaactctcttcctaacact 225  Q
    |||||||| |||||||||||||||||    
T  8992056 gcttggtagactctcttcctaacact 8992031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 9016604 - 9016377
Alignment:
Q  1 aaaaaagtaatttaatactgttgtggcccattgggccactaatcaaatattaaact---gataagaacagatactacacttgatcttagccaaaaggccg 97  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||   ||||||||||||||||||| |||||||||||||||||| ||    
T  9016604 aaaaaagtaatttaatactgttgtgacccattgggccactaatcagatattaaactactgataagaacagatactacatttgatcttagccaaaaggtcg 9016505  T
Q  98 agaaaggtatgagttgaaagatgttctcgcttatggttttatatatcacatcc-ctcacttgctttcatgaacaaccgatgtgggacttttttgaaatag 196  Q
    |  |||||||||||| |||||||  |||||||||| |||||||||||||||||  |||||||||||| |||||||| |||||||||| | ||||||| ||    
T  9016504 aataaggtatgagttaaaagatgaactcgcttatgcttttatatatcacatcctttcacttgctttcttgaacaactgatgtgggacatctttgaaacag 9016405  T
Q  197 cttgcttggtaaactctcttcctaacactt 226  Q
    | ||||||||  | ||||||||||||||||    
T  9016404 catgcttggt--agtctcttcctaacactt 9016377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 9030505 - 9030282
Alignment:
Q  1 aaaaaagtaatttaatactgttgtggcccattgggccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 100  Q
    ||||||||||||||||||||| ||| ||||||| ||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  9030505 aaaaaagtaatttaatactgt-gtgacccattgagccacttctcaaatattaaattgataagaacagatactacacttgatcttagccaaaaggccaaga 9030407  T
Q  101 aaggtatgagttgaaagatgttctcgcttatggttttatatatcacatccc-tcacttgctttcatgaacaaccgatgtgggacttttttgaaatagctt 199  Q
    ||  ||||||||||||||||  || ||||||| |||||||||||||||||| |||||||| ||| ||||||  |||||||||||||| |||||| |||||    
T  9030406 aaaatatgagttgaaagatgaacttgcttatgcttttatatatcacatcccttcacttgcattcttgaacagtcgatgtgggactttcttgaaacagctt 9030307  T
Q  200 gcttggtaaactctcttcctaacactt 226  Q
    |||||||| |  |||||||||||||||    
T  9030306 gcttggtaga--ctcttcctaacactt 9030282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 27 - 221
Target Start/End: Complemental strand, 9023529 - 9023338
Alignment:
Q  27 cccattgggccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgttctcg 126  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||    
T  9023529 cccattgggccactaatcagatattaaactaataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagttggactcg 9023430  T
Q  127 cttatggttttatatatcacatccct-cacttgctttcatgaacaaccgatgtgggacttttttgaaatagcttgcttggtaaactctcttcctaa 221  Q
    |||||| |||||||||||||||| || |||||| |||| |||||||||||||||||||||||||  |||    ||||||||| |||||||||||||    
T  9023429 cttatgcttttatatatcacatctcttcacttgatttcttgaacaaccgatgtgggactttttttgaat----tgcttggtagactctcttcctaa 9023338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 8988563 - 8988342
Alignment:
Q  1 aaaaaagtaatttaatactgttgtggcccattgggccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 100  Q
    ||||||||||||||||| ||||| |  |||||| | |||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||    
T  8988563 aaaaaagtaatttaatattgttgagaaccattgagtcactgatcaaatattaaactgataagaacaaatactacacttgatcttcgccaaaaggccaaga 8988464  T
Q  101 aaggtatgagttgaaagatgttctcgcttatggttttatatatcacatccc-tcacttgctttcatgaacaaccgatgtgggacttttttgaaatagctt 199  Q
    | ||||| ||||||||||||  |||||||||| |||||||||||||||||| |||||||||||| ||||||  |||||||||||| |||||||| | |||    
T  8988463 atggtataagttgaaagatgaactcgcttatgcttttatatatcacatcccttcacttgctttcttgaacagtcgatgtgggactattttgaaacaactt 8988364  T
Q  200 gcttggtaaactctcttcctaa 221  Q
    |||||||| |||| ||||||||    
T  8988363 gcttggtagactcacttcctaa 8988342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 42 - 219
Target Start/End: Complemental strand, 9032120 - 9031942
Alignment:
Q  42 atcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgttctcgcttatggttttatat 141  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||   ||||||||| ||||||||    
T  9032120 atcagatattaaactgataagaacagatactacacttgatcttaaccaaaaggccgagaaaggtatgagttgaaagatgaattcgcttatgcttttatat 9032021  T
Q  142 atcacatccc-tcacttgctttcatgaacaaccgatgtgggacttttttgaaatagcttgcttggtaaactctcttcct 219  Q
    | |||||||| |||||||||||| ||||||| |||| || ||||||||||||| ||||||||||||| ||| |||||||    
T  9032020 accacatcccttcacttgctttcttgaacaatcgatatgagacttttttgaaacagcttgcttggtagactttcttcct 9031942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 36 - 193
Target Start/End: Complemental strand, 8979395 - 8979237
Alignment:
Q  36 ccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgttctcgcttatggtt 135  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||| ||    
T  8979395 ccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgaacttgcttatgctt 8979296  T
Q  136 ttatatatcacatccc-tcacttgctttcatgaacaaccgatgtgggacttttttgaaa 193  Q
    ||||||||||  |||| ||||||| || | ||||||||| |||||||||||||||||||    
T  8979295 ttatatatcaagtcccttcacttgattccttgaacaaccaatgtgggacttttttgaaa 8979237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 9008129 - 9008018
Alignment:
Q  1 aaaaaagtaatttaatactgttgtggcccattgggccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 100  Q
    |||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9008129 aaaaaagtaatttaatactgttatgacccattgggccactaatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 9008030  T
Q  101 aaggtatgagtt 112  Q
    ||||||||||||    
T  9008029 aaggtatgagtt 9008018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 32918187 - 32918074
Alignment:
Q  1 aaaaaagtaatttaatactgttgtggcccattgggccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 100  Q
    |||||||||||||||||  || |||| ||||||| ||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32918187 aaaaaagtaatttaatatcgt-gtggaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 32918089  T
Q  101 aaggtatgagttgaa 115  Q
    |||||||||||||||    
T  32918088 aaggtatgagttgaa 32918074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 2841017 - 2841201
Alignment:
Q  1 aaaaaagtaatttaatactgttgtggcccattgggccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 100  Q
    |||||||||||||||||  || |||  ||||||  ||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2841017 aaaaaagtaatttaatatcgt-gtgatccattgaaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 2841115  T
Q  101 aaggtatgag-ttgaaagatgttctcgcttatggttttatatatcacatcc-ctcacttgctttcatgaacaaccgatgtgggact 184  Q
    ||||||||||  | ||| | |  ||||| | || |||||||| |||||||| ||||||||||||| | ||||||||||||||||||    
T  2841116 aaggtatgagagttaaaaaggggctcgcgtctgcttttatatctcacatccactcacttgctttcttcaacaaccgatgtgggact 2841201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 30732115 - 30731997
Alignment:
Q  1 aaaaaagtaatttaatactgttgtggcccattgggccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 100  Q
    |||||||||||||||||  || |||  ||||||| ||||  || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30732115 aaaaaagtaatttaatatcgt-gtgaaccattggtccacatattagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 30732017  T
Q  101 aaggtatgagttgaaagatg 120  Q
    ||||||||||||||||||||    
T  30732016 aaggtatgagttgaaagatg 30731997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 29 - 116
Target Start/End: Complemental strand, 43850129 - 43850042
Alignment:
Q  29 cattgggccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaa 116  Q
    |||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43850129 cattgggccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaa 43850042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 30734095 - 30733985
Alignment:
Q  1 aaaaaagtaatttaatactgttgtggcccattgggccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 100  Q
    ||||||||||||||||| |  ||||  ||||||| ||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30734095 aaaaaagtaatttaata-tcatgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 30733997  T
Q  101 aaggtatgagtt 112  Q
    ||||||| ||||    
T  30733996 aaggtataagtt 30733985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 80 - 219
Target Start/End: Complemental strand, 8975724 - 8975584
Alignment:
Q  80 atcttagccaaaaggccgagaaaggtatgagttgaaagatgttctcgcttatggttttatatatcacatccc-tcacttgctttcatgaacaaccgatgt 178  Q
    ||||||||||||||||  |||||  ||||||||||||| ||  |||||||||| |||||||||||||||||| ||||||| |||| | ||||   ||||     
T  8975724 atcttagccaaaaggcttagaaaaatatgagttgaaagttggactcgcttatgcttttatatatcacatcccttcacttgatttcttaaacagttgatgg 8975625  T
Q  179 gggacttttttgaaatagcttgcttggtaaactctcttcct 219  Q
    ||||||||||||||| | |||||||||||||||||||||||    
T  8975624 gggacttttttgaaacaacttgcttggtaaactctcttcct 8975584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 164 - 220
Target Start/End: Complemental strand, 9008012 - 9007956
Alignment:
Q  164 atgaacaaccgatgtgggacttttttgaaatagcttgcttggtaaactctcttccta 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9008012 atgaacaaccgatgtgggacttttttgaaatagcttgcttggtaaactctcttccta 9007956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 48 - 107
Target Start/End: Original strand, 19232445 - 19232504
Alignment:
Q  48 tattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtat 107  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  19232445 tattaaactgataagaacagatattacacttgatcttagccaaaaggccgagaaaggtat 19232504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 129 - 221
Target Start/End: Complemental strand, 8996339 - 8996246
Alignment:
Q  129 tatggttttatatatcacatccct-cacttgctttcatgaacaaccgatgtgggacttttttgaaatagcttgcttggtaaactctcttcctaa 221  Q
    |||| ||||||||||||||||||| || |||||||| ||||||  |||||||||||| |||||||| | ||||||||||| |||||||||||||    
T  8996339 tatgcttttatatatcacatcccttcagttgctttcttgaacagtcgatgtgggactattttgaaacaacttgcttggtagactctcttcctaa 8996246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 10763878 - 10763978
Alignment:
Q  1 aaaaaagtaatttaatactgttgtggcccattgggccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 100  Q
    ||||||||||||||||| |||  ||| ||||||  ||||  |||| |||||||||||||||||||| ||||||||||||||||||| |||||| ||||||    
T  10763878 aaaaaagtaatttaatattgta-tggaccattgatccacatatcagatattaaactgataagaacatatactacacttgatcttagtcaaaagaccgaga 10763976  T
Q  101 aa 102  Q
    ||    
T  10763977 aa 10763978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 107
Target Start/End: Original strand, 6471749 - 6471813
Alignment:
Q  42 atcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtat 107  Q
    |||| |||||||||| ||||||||| ||||||||||| ||||||||||||||| ||| ||||||||    
T  6471749 atcagatattaaactaataagaacatatactacactt-atcttagccaaaaggtcgaaaaaggtat 6471813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 105
Target Start/End: Complemental strand, 35701956 - 35701893
Alignment:
Q  42 atcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggt 105  Q
    ||||||||||||||| |||| |||| |||| |||||||||||||||||||| |  |||||||||    
T  35701956 atcaaatattaaactaataaaaacaaataccacacttgatcttagccaaaaagttgagaaaggt 35701893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 106
Target Start/End: Complemental strand, 39814150 - 39814115
Alignment:
Q  71 ctacacttgatcttagccaaaaggccgagaaaggta 106  Q
    |||||||||||| |||||||||||||||||||||||    
T  39814150 ctacacttgatcatagccaaaaggccgagaaaggta 39814115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 33988177 - 33987951
Alignment:
Q  1 aaaaaagtaatttaatactgttgtggcccattgggccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 100  Q
    |||||||||||||||||  || ||| | ||||| |||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33988177 aaaaaagtaatttaatatcgt-gtgactcattgagccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 33988079  T
Q  101 aaggtatgagttgaaagatgttctcgcttatggttttatatatcacatccc-tcacttgctttcatgaacaaccgatgtgggacttttttgaaata-gct 198  Q
    ||||||||||||||||||||  ||| |||||| ||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||| | | |    
T  33988078 aaggtatgagttgaaagatggactcacttatgcttttatatatcacctcccttcacttgctttcttgaacaaccgatgtgggacttttttgaaacagggt 33987979  T
Q  199 tgcttggtaaactctcttcctaacactt 226  Q
    ||| || |||||||||||||||||||||    
T  33987978 tgcatgttaaactctcttcctaacactt 33987951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 14654340 - 14654458
Alignment:
Q  1 aaaaaagtaatttaatactgttgtggcccattgggccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 100  Q
    |||||||||||||||||  || |||  ||||||| ||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14654340 aaaaaagtaatttaatatcgt-gtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 14654438  T
Q  101 aaggtatgagttgaaagatg 120  Q
    ||||||||||||||||||||    
T  14654439 aaggtatgagttgaaagatg 14654458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 14664131 - 14664249
Alignment:
Q  1 aaaaaagtaatttaatactgttgtggcccattgggccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 100  Q
    |||||||||||||||||  || |||  ||||||| ||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14664131 aaaaaagtaatttaatatcgt-gtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 14664229  T
Q  101 aaggtatgagttgaaagatg 120  Q
    ||||||||||||||||||||    
T  14664230 aaggtatgagttgaaagatg 14664249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 14669709 - 14669827
Alignment:
Q  1 aaaaaagtaatttaatactgttgtggcccattgggccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 100  Q
    |||||||||||||||||  || |||  ||||||| ||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14669709 aaaaaagtaatttaatatcgt-gtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 14669807  T
Q  101 aaggtatgagttgaaagatg 120  Q
    ||||||||||||||||||||    
T  14669808 aaggtatgagttgaaagatg 14669827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 14706195 - 14706077
Alignment:
Q  1 aaaaaagtaatttaatactgttgtggcccattgggccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 100  Q
    |||||||||||||||||  || |||  ||||||| ||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14706195 aaaaaagtaatttaatatcgt-gtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 14706097  T
Q  101 aaggtatgagttgaaagatg 120  Q
    ||||||||||||||||||||    
T  14706096 aaggtatgagttgaaagatg 14706077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 14708685 - 14708567
Alignment:
Q  1 aaaaaagtaatttaatactgttgtggcccattgggccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 100  Q
    |||||||||||||||||  || |||  ||||||| ||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14708685 aaaaaagtaatttaatatcgt-gtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 14708587  T
Q  101 aaggtatgagttgaaagatg 120  Q
    ||||||||||||||||||||    
T  14708586 aaggtatgagttgaaagatg 14708567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 14683857 - 14683743
Alignment:
Q  1 aaaaaagtaatttaatactgttgtggcccattgggccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 100  Q
    |||||||||||||||||  || |||  ||||||| ||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14683857 aaaaaagtaatttaatatcgt-gtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 14683759  T
Q  101 aaggtatgagttgaaa 116  Q
    ||||||||||||||||    
T  14683758 aaggtatgagttgaaa 14683743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 14716398 - 14716280
Alignment:
Q  1 aaaaaagtaatttaatactgttgtggcccattgggccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 100  Q
    |||||||||||||||||  || |||  ||||||| ||||  || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14716398 aaaaaagtaatttaatatcgt-gtgaaccattggtccacatattagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 14716300  T
Q  101 aaggtatgagttgaaagatg 120  Q
    ||||||||||||||||||||    
T  14716299 aaggtatgagttgaaagatg 14716280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 38175530 - 38175644
Alignment:
Q  1 aaaaaagtaatttaatactgttgtggcccattgggccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 100  Q
    |||||||||||||||||  || ||| ||||||||  |||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38175530 aaaaaagtaatttaatatcgt-gtgacccattggaacacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 38175628  T
Q  101 aaggtatgagttgaaa 116  Q
    ||||||||||||||||    
T  38175629 aaggtatgagttgaaa 38175644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 14674588 - 14674471
Alignment:
Q  1 aaaaaagtaatttaatactgttgtggcccattgggccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 100  Q
    ||||||||||||||||| |  ||||  ||||||| ||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14674588 aaaaaagtaatttaata-tcatgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 14674490  T
Q  101 aaggtatgagttgaaagat 119  Q
    ||||||||||||| |||||    
T  14674489 aaggtatgagttggaagat 14674471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 14679966 - 14679849
Alignment:
Q  1 aaaaaagtaatttaatactgttgtggcccattgggccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 100  Q
    ||||||||||||||||| |  ||||  ||||||| ||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14679966 aaaaaagtaatttaata-tcatgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 14679868  T
Q  101 aaggtatgagttgaaagat 119  Q
    ||||||||||||| |||||    
T  14679867 aaggtatgagttggaagat 14679849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 28366198 - 28366315
Alignment:
Q  1 aaaaaagtaatttaatactgttgtggcccattgggc-cactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgag 99  Q
    |||||||||||||||||  || ||| |||||||||  |||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28366198 aaaaaagtaatttaatatcgt-gtgacccattggggtcacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgag 28366296  T
Q  100 aaaggtatgagttgaaaga 118  Q
    |||||||||||||||||||    
T  28366297 aaaggtatgagttgaaaga 28366315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 14652632 - 14652525
Alignment:
Q  1 aaaaaagtaatttaatactgttgtggcccattgggccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 100  Q
    |||||||||||||||||  || |||| ||||||| ||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14652632 aaaaaagtaatttaatatcgt-gtggaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 14652534  T
Q  101 aaggtatga 109  Q
    |||||||||    
T  14652533 aaggtatga 14652525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 14662423 - 14662316
Alignment:
Q  1 aaaaaagtaatttaatactgttgtggcccattgggccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 100  Q
    |||||||||||||||||  || |||| ||||||| ||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14662423 aaaaaagtaatttaatatcgt-gtggaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 14662325  T
Q  101 aaggtatga 109  Q
    |||||||||    
T  14662324 aaggtatga 14662316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 28 - 116
Target Start/End: Complemental strand, 14676713 - 14676625
Alignment:
Q  28 ccattgggccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaa 116  Q
    ||||||| ||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14676713 ccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaa 14676625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 14681706 - 14681592
Alignment:
Q  1 aaaaaagtaatttaatactgttgtggcccattgggccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 100  Q
    |||||||||||||||||  || |||  ||||||| ||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14681706 aaaaaagtaatttaatatcgt-gtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 14681608  T
Q  101 aaggtatgagttgaaa 116  Q
    ||||||| ||||||||    
T  14681607 aaggtataagttgaaa 14681592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 14667112 - 14667221
Alignment:
Q  2 aaaaagtaatttaatactgttgtggcccattgggccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaa 101  Q
    |||||||||||||||| |  ||||  ||||||| ||||  |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  14667112 aaaaagtaatttaata-tcatgtgaaccattggtccacgtatcagatattaaactaataagaacagatactacacttgatcttagccaaaaggccgagaa 14667210  T
Q  102 aggtatgagtt 112  Q
    |||||||||||    
T  14667211 aggtatgagtt 14667221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 11872481 - 11872585
Alignment:
Q  1 aaaaaagtaatttaatactgttgtggcccattgggccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 100  Q
    |||||||||||||||||  || ||| |||||||  ||||  |||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  11872481 aaaaaagtaatttaatatcgt-gtgacccattgaaccacatatcatatattaaactgataagaacagatagtacacttgatcttagtcaaaaggccgaga 11872579  T
Q  101 aaggta 106  Q
    ||||||    
T  11872580 aaggta 11872585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 37422236 - 37422175
Alignment:
Q  42 atcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaag 103  Q
    |||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  37422236 atcagatattaaactgataagaacatatgctacacttgatcttagccaaaaggccgagaaag 37422175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 42 - 113
Target Start/End: Complemental strand, 28698620 - 28698549
Alignment:
Q  42 atcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttg 113  Q
    ||||||||||||| |||||| || | |||||||| ||||||||||||||||| |||||||| ||||||||||    
T  28698620 atcaaatattaaattgataaaaatatatactacatttgatcttagccaaaagaccgagaaatgtatgagttg 28698549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 8e-48; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 41841152 - 41841335
Alignment:
Q  1 aaaaaagtaatttaatactgttgtggcccattgggccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 100  Q
    |||||||||||||||||  || ||| |||||||| ||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41841152 aaaaaagtaatttaatatcgt-gtgacccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 41841250  T
Q  101 aaggtatgagttgaaagatgttctcgcttatggttttatatatcacatcc-ctcacttgctttcatgaacaaccgatgtgggact 184  Q
    ||||||||||||||||||||   | |||| || |||||||| |||||||| ||||||||||||| | ||| | ||||||||||||    
T  41841251 aaggtatgagttgaaagatgggttggcttctgcttttatatctcacatccactcacttgctttcttaaacgagcgatgtgggact 41841335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 44879090 - 44878977
Alignment:
Q  1 aaaaaagtaatttaatactgttgtggcccattgggccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 100  Q
    ||||||||||||||||| |  |||| ||||||| |||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44879090 aaaaaagtaatttaata-tcatgtgacccattgagccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 44878992  T
Q  101 aaggtatgagttgaa 115  Q
    |||||||||||||||    
T  44878991 aaggtatgagttgaa 44878977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 44880831 - 44880944
Alignment:
Q  1 aaaaaagtaatttaatactgttgtggcccattgggccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 100  Q
    ||||||||||||||||| |  |||| ||||||| |||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44880831 aaaaaagtaatttaata-tcatgtgacccattgagccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 44880929  T
Q  101 aaggtatgagttgaa 115  Q
    |||||||||||||||    
T  44880930 aaggtatgagttgaa 44880944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 40054419 - 40054312
Alignment:
Q  1 aaaaaagtaatttaatactgttgtggcccattgggccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 100  Q
    |||||||||||||||||  ||  || |||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40054419 aaaaaagtaatttaatatcgta-tgacccattgggccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 40054321  T
Q  101 aaggtatga 109  Q
    |||||||||    
T  40054320 aaggtatga 40054312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 42 - 184
Target Start/End: Original strand, 42555123 - 42555266
Alignment:
Q  42 atcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgttctcgcttatggttttatat 141  Q
    |||||||||||||||||||| ||||||| || ||||||||||||||||||||  | |||||||||||||||||||| ||  ||  |||  ||||||||||    
T  42555123 atcaaatattaaactgataaaaacagattctgcacttgatcttagccaaaagatcaagaaaggtatgagttgaaagttgagctaccttcaggttttatat 42555222  T
Q  142 atcacatcc-ctcacttgctttcatgaacaaccgatgtgggact 184  Q
    ||||||||| ||||||||||||| | ||| | ||||||||||||    
T  42555223 atcacatccactcacttgctttcttaaactatcgatgtgggact 42555266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 107
Target Start/End: Complemental strand, 37679841 - 37679757
Alignment:
Q  23 gtggcccattgggccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtat 107  Q
    |||| ||||||| ||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37679841 gtggaccattggcccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtat 37679757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 22 - 109
Target Start/End: Complemental strand, 37682144 - 37682057
Alignment:
Q  22 tgtggcccattgggccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 109  Q
    ||||| ||||||| ||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37682144 tgtggaccattggcccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaatgtatga 37682057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 10944444 - 10944509
Alignment:
Q  47 atattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagtt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10944444 atattaaactgataagaacagatactacacttgatcttagccaaaaggtcgagaaaggtatgagtt 10944509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 42 - 184
Target Start/End: Original strand, 42220886 - 42221027
Alignment:
Q  42 atcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgttctcgcttatggttttatat 141  Q
    |||| |||||||||| ||||||| |||||||||||||||||||||||||||| |||| ||| |||||||||||||| | | ||||| | || ||||||||    
T  42220886 atcagatattaaactaataagaa-agatactacacttgatcttagccaaaagaccgaaaaatgtatgagttgaaagctatgctcgcctctgcttttatat 42220984  T
Q  142 atcacatccctcacttgctttcatgaacaaccgatgtgggact 184  Q
     ||| ||||  ||||| |||||  |||| | ||||||||||||    
T  42220985 ctcatatccaccacttactttctagaactagcgatgtgggact 42221027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 42 - 185
Target Start/End: Complemental strand, 42092087 - 42091944
Alignment:
Q  42 atcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgttctcgcttatggttttatat 141  Q
    |||| |||||||||||||||||||| ||| ||||||| || |||| ||||||||  ||||||||||||||| |||||||   | |||| |||||||||||    
T  42092087 atcagatattaaactgataagaacaaatattacacttaattttag-caaaaggcaaagaaaggtatgagtttaaagatgagtttgcttctggttttatat 42091989  T
Q  142 atcacatcc-ctcacttgctttcatgaacaaccgatgtgggactt 185  Q
     |||  ||| |||| |||||||| ||||| |||||||||||||||    
T  42091988 ctcaggtccactcagttgctttcttgaactaccgatgtgggactt 42091944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 66 - 116
Target Start/End: Original strand, 42872514 - 42872564
Alignment:
Q  66 agatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaa 116  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  42872514 agatactacacttaatcttagccaaaaggccgagaaaggtatgagttgaaa 42872564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 42 - 92
Target Start/End: Complemental strand, 44582920 - 44582870
Alignment:
Q  42 atcaaatattaaactgataagaacagatactacacttgatcttagccaaaa 92  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  44582920 atcagatattaaactgataagaacagatactacacttgatcttagccaaaa 44582870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 8e-48; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 3461142 - 3461325
Alignment:
Q  1 aaaaaagtaatttaatactgttgtggcccattgggccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 100  Q
    |||||||||||||||||  || ||| ||||||| | |||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3461142 aaaaaagtaatttaatatcgt-gtgacccattgagtcacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 3461240  T
Q  101 aaggtatgagttgaaagatgttctcgcttatggttttatatatcacatcc-ctcacttgctttcatgaacaaccgatgtgggact 184  Q
    ||||||||| ||||||||  | ||||||||||||||||||| || ||||| ||||||||||||| |  |||| ||||||||||||    
T  3461241 aaggtatgaattgaaagagatgctcgcttatggttttatatctcccatccactcacttgctttcttccacaagcgatgtgggact 3461325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 11652392 - 11652575
Alignment:
Q  1 aaaaaagtaatttaatactgttgtggcccattgggccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 100  Q
    |||||| ||||||||||  || ||| |||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11652392 aaaaaaataatttaatatcgt-gtgacccattgggccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 11652490  T
Q  101 aaggtatgagttgaaagatgttctcgcttatggttttatatatcacatcc-ctcacttgctttcatgaacaaccgatgtgggact 184  Q
    |||||||||||| |||||||   | |||| ||||||||||| |||||||| ||||||||||||| | ||| | ||||||||||||    
T  11652491 aaggtatgagttaaaagatgggttggcttctggttttatatctcacatccactcacttgctttcttaaacgagcgatgtgggact 11652575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 49106529 - 49106644
Alignment:
Q  1 aaaaaagtaatttaatactgttgtggcccattgggccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 100  Q
    |||||||||||||||||  || |||  ||||||| ||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49106529 aaaaaagtaatttaatatcgt-gtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 49106627  T
Q  101 aaggtatgagttgaaag 117  Q
    |||||||||||||||||    
T  49106628 aaggtatgagttgaaag 49106644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 49108633 - 49108747
Alignment:
Q  1 aaaaaagtaatttaatactgttgtggcccattgggccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 100  Q
    |||||||||||||||||  || ||| ||||||| | |||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49108633 aaaaaagtaatttaatatcgt-gtgacccattgagtcacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 49108731  T
Q  101 aaggtatgagttgaaa 116  Q
    ||||||||||||||||    
T  49108732 aaggtatgagttgaaa 49108747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 50077199 - 50077315
Alignment:
Q  1 aaaaaagtaatttaatactgttgtggcccattgggccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 100  Q
    ||||||||||||||||| |  ||||  |||||||  |||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50077199 aaaaaagtaatttaata-tcatgtgaaccattggaacacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 50077297  T
Q  101 aaggtatgagttgaaaga 118  Q
    ||||||||||||||||||    
T  50077298 aaggtatgagttgaaaga 50077315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 26998740 - 26998846
Alignment:
Q  1 aaaaaagtaatttaatactgttgtggcccattgggccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 100  Q
    |||||||||||||||||  || |||| ||||||| ||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26998740 aaaaaagtaatttaatatcgt-gtggaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 26998838  T
Q  101 aaggtatg 108  Q
    ||||||||    
T  26998839 aaggtatg 26998846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 2 - 108
Target Start/End: Original strand, 26984668 - 26984773
Alignment:
Q  2 aaaaagtaatttaatactgttgtggcccattgggccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaa 101  Q
    ||||||||||||||||  || |||| ||||||| ||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26984668 aaaaagtaatttaatatcgt-gtggaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaa 26984766  T
Q  102 aggtatg 108  Q
    |||||||    
T  26984767 aggtatg 26984773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 48205893 - 48205832
Alignment:
Q  47 atattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 108  Q
    |||||||| | ||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  48205893 atattaaattaataagaacagatactacacttaatcttagctaaaaggccgagaaaggtatg 48205832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 21503785 - 21503706
Alignment:
Q  1 aaaaaagtaatttaatactgttgtggcccattgggccactaatcaaatattaaactgataagaacagatactacacttgat 81  Q
    |||||| ||||||||||  || ||| || |||| |||||  |||| |||||||||||||||||||||||||||||||||||    
T  21503785 aaaaaaataatttaatatcgt-gtgacctattgagccacatatcagatattaaactgataagaacagatactacacttgat 21503706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 6431957 - 6432010
Alignment:
Q  49 attaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaa 102  Q
    |||||||| ||||||| |||||||| || ||||||||||||| |||||||||||    
T  6431957 attaaactaataagaagagatactaaacctgatcttagccaataggccgagaaa 6432010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 107
Target Start/End: Original strand, 41013586 - 41013651
Alignment:
Q  42 atcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtat 107  Q
    |||| ||||||||| |||||||||| ||| || |||| |||||| |||||||||||||||| ||||    
T  41013586 atcagatattaaacggataagaacatatattatacttaatcttaaccaaaaggccgagaaaagtat 41013651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 102
Target Start/End: Complemental strand, 26982588 - 26982549
Alignment:
Q  63 aacagatactacacttgatcttagccaaaaggccgagaaa 102  Q
    ||||||| |||||||||||||||||||| |||||||||||    
T  26982588 aacagatgctacacttgatcttagccaagaggccgagaaa 26982549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 34481155 - 34481191
Alignment:
Q  68 atactacacttgatcttagccaaaaggccgagaaagg 104  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  34481155 atactacactcgatcttagccaaaaggctgagaaagg 34481191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 1716451 - 1716634
Alignment:
Q  1 aaaaaagtaatttaatactgttgtggcccattggg-ccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgag 99  Q
    |||||||||||||||||  || ||| |||||| || ||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1716451 aaaaaagtaatttaatatcgt-gtgacccatttggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgag 1716549  T
Q  100 aaaggtatgagttgaaagatgttctcgcttatggttttatatatcacatcc-ctcacttgctttcatgaacaaccgatgtgggact 184  Q
    ||||||||||||| |||||||  ||||||| |  |||||||| |||||||| ||||||||||||| ||||| | ||||||||||||    
T  1716550 aaaggtatgagttaaaagatgcactcgcttcttattttatatctcacatccactcacttgctttc-tgaactagcgatgtgggact 1716634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 3643747 - 3643599
Alignment:
Q  1 aaaaaagtaatttaatactgttgtggcccattgggccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 100  Q
    |||||||||||||||||  || ||| |||| ||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3643747 aaaaaagtaatttaatatcgt-gtgacccaatgggccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 3643649  T
Q  101 aaggtatgagttgaaagatgttctcgcttatggttttatatatcacatcc 150  Q
    ||||||||| || ||||    |||||||| || ||||||||  |||||||    
T  3643648 aaggtatgaatttaaagtaagtctcgcttctgtttttatatcccacatcc 3643599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 7525075 - 7524961
Alignment:
Q  1 aaaaaagtaatttaatactgttgtggcccattgggccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 100  Q
    |||||||||||||||||  || |||  |||||||  |||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7525075 aaaaaagtaatttaatatcgt-gtgatccattggatcacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 7524977  T
Q  101 aaggtatgagttgaaa 116  Q
    ||||||||| ||||||    
T  7524976 aaggtatgacttgaaa 7524961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 4103352 - 4103249
Alignment:
Q  1 aaaaaagtaatttaatactgttgtggcccattgggccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 100  Q
    ||||||| |||||||||  || |||| | ||||||||||  |||| ||||||||||||||||||||||||||||||||||||||| |||||| || ||||    
T  4103352 aaaaaagcaatttaatatcgt-gtggactattgggccacatatcagatattaaactgataagaacagatactacacttgatcttaaccaaaatgctgaga 4103254  T
Q  101 aaggt 105  Q
    |||||    
T  4103253 aaggt 4103249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 16037964 - 16037861
Alignment:
Q  1 aaaaaagtaatttaatactgttgtggcccattgggccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 100  Q
    |||||||||||||||||  ||| || |||||| | |||||| |||||||||||  | ||||||||| |||||||||||||||||||  ||| ||||||||    
T  16037964 aaaaaagtaatttaatatcgtt-tgacccattagaccacta-tcaaatattaagataataagaacaaatactacacttgatcttag-aaaacggccgaga 16037868  T
Q  101 aaggtat 107  Q
    || ||||    
T  16037867 aaagtat 16037861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 19261156 - 19261216
Alignment:
Q  42 atcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaa 102  Q
    |||| ||||| ||| |||||||||| ||| ||||||||||||||  |||||||| ||||||    
T  19261156 atcagatatttaacggataagaacatatattacacttgatcttaatcaaaaggctgagaaa 19261216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 7e-39; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 10795890 - 10796006
Alignment:
Q  1 aaaaaagtaatttaatactgttgtggcccattgggccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 100  Q
    |||||||||||||||||  || ||| ||||||||| |||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10795890 aaaaaagtaatttaatatcgt-gtgacccattgggtcacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 10795988  T
Q  101 aaggtatgagttgaaaga 118  Q
    ||||||||||||||||||    
T  10795989 aaggtatgagttgaaaga 10796006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 10791652 - 10791768
Alignment:
Q  1 aaaaaagtaatttaatactgttgtggcccattgggccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 100  Q
    ||||||||||||||||| |  |||| ||||||||  |||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10791652 aaaaaagtaatttaata-tcatgtgacccattggatcacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 10791750  T
Q  101 aaggtatgagttgaaaga 118  Q
    ||||||||||||||||||    
T  10791751 aaggtatgagttgaaaga 10791768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 42 - 109
Target Start/End: Complemental strand, 30521309 - 30521242
Alignment:
Q  42 atcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 109  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  30521309 atcagatattaaactgataagaacagatactacacttgatctcagccaaaaggtcgagaaaggtatga 30521242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 107
Target Start/End: Complemental strand, 8875756 - 8875691
Alignment:
Q  42 atcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtat 107  Q
    |||| |||||||| ||||||||||||||| |||||||||||||||||||||||||| |||| ||||    
T  8875756 atcagatattaaattgataagaacagatattacacttgatcttagccaaaaggccgggaaatgtat 8875691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 102
Target Start/End: Complemental strand, 21216131 - 21216032
Alignment:
Q  2 aaaaagtaatttaatactgttgtggcccattgggccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaa 101  Q
    |||||||||||||||| | |||||   ||||| |||||  || | |||||||||||||||||| |||| ||| || ||||||||| |||||| || ||||    
T  21216131 aaaaagtaatttaatatt-ttgtgattcattgagccacatataagatattaaactgataagaatagatgctatacatgatcttagtcaaaagaccaagaa 21216033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 61 - 107
Target Start/End: Original strand, 15758562 - 15758608
Alignment:
Q  61 agaacagatactacacttgatcttagccaaaaggccgagaaaggtat 107  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||    
T  15758562 agaacagatattacacttgatcttagccaaaaggctgagaaaggtat 15758608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 27134618 - 27134511
Alignment:
Q  1 aaaaaagtaatttaatactgttgtggcccattgggccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 100  Q
    |||||||||||||||||  ||| || | |||| | ||||  |||| |||||||||  |||||||||||||||| | ||||||||||  |||||||||| |    
T  27134618 aaaaaagtaatttaatatcgtt-tgactcattagaccacatatcagatattaaaccaataagaacagatactagatttgatcttagtgaaaaggccgaaa 27134520  T
Q  101 aaggtatga 109  Q
    |||||||||    
T  27134519 aaggtatga 27134511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 8128224 - 8128149
Alignment:
Q  28 ccattgggccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaag 103  Q
    ||||||| ||||  |||| |||||||||| | ||||||| ||||||||||| |||||| |||||||  ||||||||    
T  8128224 ccattggcccacatatcatatattaaactaaaaagaacatatactacacttaatcttaaccaaaagaacgagaaag 8128149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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