View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0766_low_8 (Length: 517)

Name: NF0766_low_8
Description: NF0766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0766_low_8
NF0766_low_8
[»] chr1 (1 HSPs)
chr1 (29-505)||(42326272-42326748)


Alignment Details
Target: chr1 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 29 - 505
Target Start/End: Original strand, 42326272 - 42326748
Alignment:
Q  29 aggctatgcattcaccaagaacacctaaggacccaattattaggtataccccaatccagctccatttcttttcatttacagcagtttcattcgttgttaa 128  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42326272 aggctatgcattcaccaagaacacctaaggatccaattattaggtataccccaatccagctccatttcttttcatttacagcagtttcattcgttgttaa 42326371  T
Q  129 cactaatgatggcaggtttgaatggttttcatcatctgtttttatttgagaaagaaaacaatataaagnnnnnnnntgggatagtgacttagaaggggtt 228  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||        ||||||||||| ||||||||||||    
T  42326372 cactaatgatggcagatttgaatggttttcatcatctgtttttatttgagagagaaaacaatataaagaaaaaaaatgggatagtgaattagaaggggtt 42326471  T
Q  229 ttatctttcacatttttcttgtttctgcattcatgtataagaaataaaaattactttgctaattggaatcaacataactcattacccatctaatcatgct 328  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  42326472 ttatctttcacatttttcttgtttctgcattcatgtttaagaaataaaaattactttgctaattggaatcaacataattcattacccttctaatcatgct 42326571  T
Q  329 ccccttttctggtcttactcttacttaaatactacaaactctaatcaggcatactcttatagtctttttcagggtaaatttactgtttactcccctctag 428  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42326572 ccccttttctggtcttactcttacttaaatactacaaactctaatcaggcatactcgtatagtctttttcagggtaaatttactgtttactcccctctag 42326671  T
Q  429 tttctcacattttcaattcaccccctcaatctcaattcccctttgcattgaagtgaactgaaactgtttataatatt 505  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  42326672 tttctcacattttcaattcaccccctcaatctcaatccccctttgcattgaagtgaactgaaactgtttataatatt 42326748  T

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