View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0767_high_14 (Length: 300)
Name: NF0767_high_14
Description: NF0767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0767_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 49104564 - 49104340
Alignment:
| Q |
1 |
caatcacattatatttcaacatcaattannnnnnnccatacaatatgattaggaatcatgtttacaccattagtgtcccacttacataggccnnnnnnna |
100 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
49104564 |
caatcacattatatttcaacatcaattatttttttccatacaatatgattaggaatcatgtttacaccattagtgtcccacttacataggccttttttta |
49104465 |
T |
|
| Q |
101 |
gagcaagtaccataaattttttcaaagattcaataatatagtttataaaattcagaaacttatttaagaatttttaaatggttcaaggacctttgatata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49104464 |
gagcaagtaccataaattttttcaaagattcaataatatagtttataaaattcagaaacttatttaagaatttttaaatggttcaaggacctttgatata |
49104365 |
T |
|
| Q |
201 |
gttaaaccttatttatattcttgga |
225 |
Q |
| |
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||||||||||||||||||| ||||| |
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| T |
49104364 |
gttaaaccttatttatattgttgga |
49104340 |
T |
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