View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0767_high_18 (Length: 265)
Name: NF0767_high_18
Description: NF0767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0767_high_18 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 39 - 265
Target Start/End: Original strand, 13878761 - 13878987
Alignment:
| Q |
39 |
caacaaaaaatatttaaagaagaacacaaatactcaacattgaataaagttaccagaaattaggtatcgactcgataaatttgttacgctcatcatcata |
138 |
Q |
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| T |
13878761 |
caacaaaaaatatttaaagaagaacataaatactcaacattgaataaagttaccagaaattaggtatcgactcgataaatttgttacgcccatcatcata |
13878860 |
T |
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| Q |
139 |
ttgtaatttcaataactcattggctcttcttcccgaatttacggctacactcctcagttagctaaaatcataaaatcatattaaatactccctcgagtct |
238 |
Q |
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| T |
13878861 |
ttgtaatttcaataactcattggctcttcttcccgaatttacggctacactcctcagttagctaaaatcataaaatcatattaaatactccctcgagtct |
13878960 |
T |
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| Q |
239 |
tttatacaagaaacaaaaccataaaac |
265 |
Q |
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| T |
13878961 |
tttatacaagaaacaaaaacataaaac |
13878987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 256
Target Start/End: Original strand, 26848040 - 26848085
Alignment:
| Q |
211 |
aaatcatattaaatactccctcgagtcttttatacaagaaacaaaa |
256 |
Q |
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| T |
26848040 |
aaatcatattaactactccctccgatcttttatacaagaaacaaaa |
26848085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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