View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0767_high_19 (Length: 265)
Name: NF0767_high_19
Description: NF0767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0767_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 31621202 - 31621443
Alignment:
| Q |
1 |
tctctagcgactgcaagtttatgtgttgtatcgacccattcaagaatacggtatttgacgtcattgatggttatctttggaacactttcttcgcatgtaa |
100 |
Q |
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| T |
31621202 |
tctctagcgactgtgagtttctgtgttgtattgtcccattcaagaatacggtatttgacgtcattgatggttatctttggaacactttcttcgcatgtaa |
31621301 |
T |
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| Q |
101 |
gctccatattaggatcagaaa---aaccacattcctttcctctgttttttccccagaatggatacttgaggtttgtgacactg---tctccacagtcaaa |
194 |
Q |
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| T |
31621302 |
gctccatattaggatcagaaacactaccacaacgctcttctctgttatttccccagaatggatacttgaggtttgtgatgctgctacttccgcattcaaa |
31621401 |
T |
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| Q |
195 |
agcttcgttgcagtctgtgtaatcatcgcacatacacgttgg |
236 |
Q |
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| T |
31621402 |
agcttcgttgcagtctgtgtaatcattgcacatacacgttgg |
31621443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 31636197 - 31636438
Alignment:
| Q |
1 |
tctctagcgactgcaagtttatgtgttgtatcgacccattcaagaatacggtatttgacgtcattgatggttatctttggaacactttcttcgcatgtaa |
100 |
Q |
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| T |
31636197 |
tctctagcgactgtgagtttctgtgttgtattgtcccattcaagaatacggtatttgacgtcattgatggttatctttggaacactttcttcgcatgtaa |
31636296 |
T |
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| Q |
101 |
gctccatattaggatcagaaa---aaccacattcctttcctctgttttttccccagaatggatacttgaggtttgtgacactg---tctccacagtcaaa |
194 |
Q |
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| T |
31636297 |
gctccatattaggatcagaaacactaccacaacgctcttctctgttatttccccagaatggatacttgaggtttgtgatgctgctacttccgcattcaaa |
31636396 |
T |
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| Q |
195 |
agcttcgttgcagtctgtgtaatcatcgcacatacacgttgg |
236 |
Q |
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| T |
31636397 |
agcttcgttgcagtctgtgtaatcattgcacatacacgttgg |
31636438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 44 - 120
Target Start/End: Original strand, 31616499 - 31616575
Alignment:
| Q |
44 |
gaatacggtatttgacgtcattgatggttatctttggaacactttcttcgcatgtaagctccatattaggatcagaa |
120 |
Q |
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| T |
31616499 |
gaatacggtatttggcgtcattgatggttatctttggaacactttcttcgcatgtaagctccatattaggatcagaa |
31616575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 31606531 - 31606646
Alignment:
| Q |
1 |
tctctagcgactgcaagtttatgtgttgtatcgacccattcaagaatacggtatttgacgtcattgatggttatctttggaacactttcttcgcatgtaa |
100 |
Q |
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||||| ||||||| ||||| ||| |||||||| ||| |||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
31606531 |
tctctggcgactgtgagtttttgtattgtatcgttccaatcaagaatgcggtatttgacgtcgttgatatttatctttggaacactttcttcgcatgtaa |
31606630 |
T |
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| Q |
101 |
gctccatattaggatc |
116 |
Q |
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| T |
31606631 |
gatccatattaggatc |
31606646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 36 - 161
Target Start/End: Original strand, 31597371 - 31597496
Alignment:
| Q |
36 |
ccattcaagaatacggtatttgacgtcattgatggttatctttggaacactttcttcgcatgtaagctccatattaggatcagaaaaaccacattccttt |
135 |
Q |
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||||||||||||||| ||||| ||| |||||| |||||||| || || || ||||||||||||||| |||||||||||| |||| |||||| | ||| |
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| T |
31597371 |
ccattcaagaatacgatatttcacgaaattgatcgttatcttcgggacttttccttcgcatgtaagcttcatattaggatcggaaacaccacaataattt |
31597470 |
T |
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| Q |
136 |
cctctgttttttccccagaatggata |
161 |
Q |
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||||| |||| ||||||||||||||| |
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| T |
31597471 |
cctctattttctccccagaatggata |
31597496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 22 - 172
Target Start/End: Original strand, 31610382 - 31610535
Alignment:
| Q |
22 |
tgtgttgtatcgacccattcaagaatacggtatttgacgtcattgatggttatctttggaacactttcttcgcatgtaagctccatattaggat---cag |
118 |
Q |
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|||||||||| | ||||||||||||||||||||||||| ||| || |||||||| || |||||| |||||||| |||||||| ||||||| ||| |
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| T |
31610382 |
tgtgttgtattgtcccattcaagaatacggtatttgaccaaattaattgttatcttagggacacttccttcgcatacgagctccatcttaggatcaccag |
31610481 |
T |
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| Q |
119 |
aaaaaccacattcctttcctctgttttttccccagaatggatacttgaggtttg |
172 |
Q |
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||| |||||| | |||| |||||||| ||||||| | |||||||||||||||| |
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| T |
31610482 |
aaacaccacaatacttttctctgtttcctccccagtacggatacttgaggtttg |
31610535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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