View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0767_high_22 (Length: 253)

Name: NF0767_high_22
Description: NF0767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0767_high_22
NF0767_high_22
[»] chr6 (12 HSPs)
chr6 (190-253)||(17914997-17915060)
chr6 (190-253)||(21610020-21610083)
chr6 (190-253)||(32165232-32165295)
chr6 (190-234)||(5958331-5958375)
chr6 (190-253)||(10184301-10184364)
chr6 (193-244)||(32675869-32675920)
chr6 (195-245)||(715890-715940)
chr6 (191-253)||(4808624-4808686)
chr6 (190-244)||(29623457-29623511)
chr6 (192-244)||(2027156-2027208)
chr6 (193-253)||(23314785-23314845)
chr6 (193-253)||(23324952-23325012)
[»] chr1 (30 HSPs)
chr1 (190-253)||(17814242-17814305)
chr1 (190-253)||(5347206-5347269)
chr1 (190-253)||(22103162-22103224)
chr1 (190-244)||(15515327-15515381)
chr1 (190-251)||(37329385-37329446)
chr1 (190-245)||(46500979-46501035)
chr1 (190-253)||(32497243-32497306)
chr1 (190-232)||(5243396-5243438)
chr1 (190-251)||(14461014-14461075)
chr1 (190-253)||(3116033-3116096)
chr1 (194-253)||(15631960-15632019)
chr1 (190-253)||(15791435-15791498)
chr1 (190-253)||(17628396-17628459)
chr1 (193-244)||(35590185-35590236)
chr1 (194-253)||(42591438-42591497)
chr1 (190-244)||(45267517-45267572)
chr1 (190-244)||(1683881-1683935)
chr1 (190-244)||(3069834-3069888)
chr1 (190-244)||(4068167-4068221)
chr1 (190-244)||(6337736-6337790)
chr1 (190-244)||(16888946-16889000)
chr1 (195-253)||(19395831-19395889)
chr1 (190-244)||(26988200-26988254)
chr1 (190-244)||(37712119-37712173)
chr1 (190-244)||(48819351-48819405)
chr1 (210-244)||(49738281-49738315)
chr1 (190-232)||(50919539-50919581)
chr1 (190-239)||(49971303-49971352)
chr1 (190-251)||(51162321-51162382)
chr1 (190-234)||(41196700-41196744)
[»] chr4 (25 HSPs)
chr4 (190-253)||(22117405-22117468)
chr4 (190-253)||(15179869-15179932)
chr4 (190-253)||(15184598-15184661)
chr4 (28-70)||(30423786-30423828)
chr4 (190-253)||(46175950-46176013)
chr4 (190-244)||(17222881-17222935)
chr4 (193-245)||(52700523-52700575)
chr4 (190-253)||(4603303-4603366)
chr4 (190-253)||(26206325-26206388)
chr4 (190-253)||(42617201-42617264)
chr4 (190-244)||(7148824-7148878)
chr4 (190-232)||(10046284-10046326)
chr4 (190-244)||(48591404-48591458)
chr4 (190-253)||(47202877-47202940)
chr4 (190-232)||(4398198-4398240)
chr4 (190-244)||(18630875-18630929)
chr4 (190-244)||(22273832-22273886)
chr4 (190-244)||(22397285-22397339)
chr4 (190-244)||(23335694-23335748)
chr4 (190-244)||(29877691-29877745)
chr4 (190-244)||(46704250-46704304)
chr4 (190-244)||(52274100-52274154)
chr4 (190-251)||(8601253-8601314)
chr4 (190-234)||(46650323-46650367)
chr4 (191-251)||(55638054-55638114)
[»] chr2 (14 HSPs)
chr2 (190-253)||(2401593-2401656)
chr2 (190-253)||(22898328-22898391)
chr2 (190-244)||(29774797-29774851)
chr2 (190-253)||(32522017-32522080)
chr2 (190-244)||(4026977-4027031)
chr2 (190-244)||(38216071-38216125)
chr2 (190-244)||(38471771-38471825)
chr2 (190-251)||(12267049-12267110)
chr2 (190-245)||(32366201-32366256)
chr2 (193-251)||(736019-736077)
chr2 (190-251)||(5516127-5516189)
chr2 (190-243)||(12223904-12223957)
chr2 (190-251)||(23956237-23956298)
chr2 (190-234)||(33321302-33321346)
[»] chr5 (16 HSPs)
chr5 (190-253)||(780539-780602)
chr5 (190-253)||(20458529-20458592)
chr5 (190-244)||(41419553-41419607)
chr5 (190-232)||(28357193-28357235)
chr5 (190-240)||(28625532-28625582)
chr5 (191-244)||(35536898-35536951)
chr5 (194-244)||(6144794-6144844)
chr5 (193-251)||(11991360-11991417)
chr5 (190-244)||(13060582-13060636)
chr5 (190-244)||(17657294-17657348)
chr5 (190-244)||(43319055-43319109)
chr5 (190-251)||(27805967-27806028)
chr5 (190-243)||(28357404-28357457)
chr5 (190-251)||(29418725-29418786)
chr5 (191-244)||(42852075-42852127)
chr5 (190-230)||(15122596-15122636)
[»] chr3 (16 HSPs)
chr3 (190-253)||(37778185-37778248)
chr3 (190-253)||(29614245-29614308)
chr3 (190-253)||(3645354-3645417)
chr3 (190-253)||(53218011-53218074)
chr3 (190-244)||(28741194-28741248)
chr3 (200-253)||(29830610-29830663)
chr3 (190-251)||(42956152-42956213)
chr3 (190-253)||(20894554-20894617)
chr3 (193-251)||(17752104-17752162)
chr3 (193-251)||(19053424-19053482)
chr3 (191-253)||(37456405-37456467)
chr3 (190-244)||(40240557-40240611)
chr3 (190-244)||(43079914-43079968)
chr3 (190-243)||(585072-585125)
chr3 (191-244)||(20174920-20174973)
chr3 (191-251)||(43971820-43971880)
[»] chr8 (15 HSPs)
chr8 (190-253)||(37410884-37410947)
chr8 (190-253)||(38338822-38338885)
chr8 (190-239)||(8216888-8216937)
chr8 (190-244)||(13131491-13131545)
chr8 (194-244)||(24350499-24350549)
chr8 (190-253)||(11988248-11988311)
chr8 (190-253)||(12607131-12607194)
chr8 (190-253)||(42363288-42363351)
chr8 (190-244)||(10298906-10298960)
chr8 (190-244)||(16972336-16972390)
chr8 (191-244)||(9131108-9131161)
chr8 (190-251)||(24866924-24866985)
chr8 (190-239)||(35168426-35168475)
chr8 (190-251)||(38895711-38895772)
chr8 (207-251)||(34338356-34338400)
[»] chr7 (10 HSPs)
chr7 (190-244)||(29378697-29378751)
chr7 (194-253)||(22575642-22575701)
chr7 (190-244)||(47654394-47654448)
chr7 (190-251)||(22032814-22032875)
chr7 (190-253)||(16958867-16958930)
chr7 (190-253)||(23137134-23137197)
chr7 (190-253)||(44799454-44799517)
chr7 (190-253)||(2194013-2194078)
chr7 (190-251)||(12473405-12473466)
chr7 (190-243)||(46744005-46744058)
[»] scaffold0332 (1 HSPs)
scaffold0332 (190-251)||(14719-14780)
[»] scaffold0512 (1 HSPs)
scaffold0512 (191-251)||(4118-4177)
[»] scaffold0012 (1 HSPs)
scaffold0012 (200-245)||(178563-178608)
[»] scaffold1088 (1 HSPs)
scaffold1088 (190-234)||(1346-1390)
[»] scaffold0024 (1 HSPs)
scaffold0024 (190-244)||(97189-97240)


Alignment Details
Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 17914997 - 17915060
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaaaa 253  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  17914997 gtagtttatgaaaaaatgggttatgaaaatacaattttcgttagtcagaacttatagattaaaa 17915060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 21610083 - 21610020
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaaaa 253  Q
    ||||||||||||||||||| ||||||| ||| ||||||||||||| |||||||||| |||||||    
T  21610083 gtagtttatgaaaaaatagtttatgaatatataattttcgttagtaagaacttataaattaaaa 21610020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 32165295 - 32165232
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaaaa 253  Q
    |||||||||||||||| || ||||||| ||||||||||||||||| ||| |||||| |||||||    
T  32165295 gtagtttatgaaaaaacagtttatgaagatacaattttcgttagtgagagcttataaattaaaa 32165232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 5958375 - 5958331
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagt 234  Q
    ||||||||||||||||||| |||| |||||||| |||||||||||    
T  5958375 gtagtttatgaaaaaatagtttataaaaatacatttttcgttagt 5958331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 10184364 - 10184301
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaaaa 253  Q
    |||||||||||||||| |  ||||||| | ||||||||||||||| ||| |||||| |||||||    
T  10184364 gtagtttatgaaaaaacaatttatgaagaaacaattttcgttagtaagagcttataaattaaaa 10184301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 244
Target Start/End: Complemental strand, 32675920 - 32675869
Alignment:
Q  193 gtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttat 244  Q
    |||||||||||||||  ||||||| ||||||||||| ||||| |||||||||    
T  32675920 gtttatgaaaaaataacttatgaagatacaattttcattagtgagaacttat 32675869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 245
Target Start/End: Complemental strand, 715940 - 715890
Alignment:
Q  195 ttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttata 245  Q
    |||||||||||||| ||||||| |||||||||| |||||| | ||||||||    
T  715940 ttatgaaaaaatagtttatgaagatacaatttttgttagtgaaaacttata 715890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 253
Target Start/End: Original strand, 4808624 - 4808686
Alignment:
Q  191 tagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaaaa 253  Q
    ||||||||||||||| || ||||||| ||||||| ||||||||| ||  |||||| |||||||    
T  4808624 tagtttatgaaaaaacagtttatgaagatacaatattcgttagtaagggcttataaattaaaa 4808686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 29623511 - 29623457
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttat 244  Q
    |||||||||||||||| |  ||||||||||| | ||||||||||| |||||||||    
T  29623511 gtagtttatgaaaaaacaacttatgaaaataaagttttcgttagtgagaacttat 29623457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 2027208 - 2027156
Alignment:
Q  192 agtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttat 244  Q
    |||||||||||||| || ||||||| |||||| ||| |||||| |||||||||    
T  2027208 agtttatgaaaaaacagcttatgaagatacaacttttgttagtaagaacttat 2027156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 253
Target Start/End: Complemental strand, 23314845 - 23314785
Alignment:
Q  193 gtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaaaa 253  Q
    |||||| ||||||| | | ||||| ||||| ||||||||||||||| |||||| |||||||    
T  23314845 gtttatcaaaaaattgttcatgaatatacagttttcgttagtcagagcttataaattaaaa 23314785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 253
Target Start/End: Complemental strand, 23325012 - 23324952
Alignment:
Q  193 gtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaaaa 253  Q
    |||||| ||||||| | | ||||| ||||| ||||||||||||||| |||||| |||||||    
T  23325012 gtttatcaaaaaattgttcatgaatatacagttttcgttagtcagagcttataaattaaaa 23324952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 17814242 - 17814305
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaaaa 253  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  17814242 gtagtttatgaaaaaatgggttatgaaaatacaattttcgttagtcagaacttatagattaaaa 17814305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 5347206 - 5347269
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaaaa 253  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||    
T  5347206 gtagtttatgaaaaaatgggttatgaaaatacaattttcgttaatcagaacttatagattaaaa 5347269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 22103162 - 22103224
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaaaa 253  Q
    |||||||||||||||  || ||||||||||||||||||||||||| |||||||||| |||||||    
T  22103162 gtagtttatgaaaaatgag-ttatgaaaatacaattttcgttagttagaacttatagattaaaa 22103224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 15515381 - 15515327
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttat 244  Q
    |||||||||||||||| || ||||||| ||||||||||||||||| |||||||||    
T  15515381 gtagtttatgaaaaaagagcttatgaagatacaattttcgttagtgagaacttat 15515327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 251
Target Start/End: Complemental strand, 37329446 - 37329385
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaa 251  Q
    |||||||||||||||| || ||||||| |||||||||||||| || |||||||||| |||||    
T  37329446 gtagtttatgaaaaaacagcttatgaagatacaattttcgttggtgagaacttataaattaa 37329385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 190 - 245
Target Start/End: Complemental strand, 46501035 - 46500979
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaatttt-cgttagtcagaacttata 245  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||| | ||||||||    
T  46501035 gtagtttatgaaaaaataggttatgaagatacaattttccgttagtgaaaacttata 46500979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 32497306 - 32497243
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaaaa 253  Q
    |||||||||||||||| || ||||||  ||||||||||||||||| ||| |||||| |||||||    
T  32497306 gtagtttatgaaaaaacagtttatgaggatacaattttcgttagtgagagcttataaattaaaa 32497243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 232
Target Start/End: Complemental strand, 5243438 - 5243396
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgtta 232  Q
    ||||||||||||||||||| ||||||| |||||||||||||||    
T  5243438 gtagtttatgaaaaaatagtttatgaagatacaattttcgtta 5243396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 251
Target Start/End: Complemental strand, 14461075 - 14461014
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaa 251  Q
    |||||||||||||||| || |||| || ||||||||||| ||||| |||||||||| |||||    
T  14461075 gtagtttatgaaaaaacagtttataaagatacaattttcattagtgagaacttataaattaa 14461014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 3116096 - 3116033
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaaaa 253  Q
    ||||||||||||||||    ||||||| ||||||||||||||||| ||| |||||| |||||||    
T  3116096 gtagtttatgaaaaaaccatttatgaagatacaattttcgttagtaagatcttataaattaaaa 3116033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 253
Target Start/End: Original strand, 15631960 - 15632019
Alignment:
Q  194 tttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaaaa 253  Q
    ||||||||||||  | ||||||||||||||||||||||||| ||| | |||| |||||||    
T  15631960 tttatgaaaaaactgtttatgaaaatacaattttcgttagtgagagcatataaattaaaa 15632019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 15791435 - 15791498
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaaaa 253  Q
    ||||||||||||||||| | | ||||| ||||||||||||||| | ||| |||||| |||||||    
T  15791435 gtagtttatgaaaaaatcgttaatgaagatacaattttcgttaatgagagcttataaattaaaa 15791498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 17628459 - 17628396
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaaaa 253  Q
    ||||||||||||||||  | ||||||| ||||||||||||||||| ||| ||| || |||||||    
T  17628459 gtagtttatgaaaaaaccgtttatgaagatacaattttcgttagtgagagcttctaaattaaaa 17628396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 35590185 - 35590236
Alignment:
Q  193 gtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttat 244  Q
    ||||||||||||| || ||||||| ||||||||||||| ||| |||||||||    
T  35590185 gtttatgaaaaaacagcttatgaagatacaattttcgtcagtgagaacttat 35590236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 253
Target Start/End: Original strand, 42591438 - 42591497
Alignment:
Q  194 tttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaaaa 253  Q
    ||||||||||||||| ||||||| ||||| ||||||||||| | | |||||| |||||||    
T  42591438 tttatgaaaaaatagtttatgaagatacacttttcgttagtgaaagcttataaattaaaa 42591497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 45267517 - 45267572
Alignment:
Q  190 gtagtttatgaaaaaat-aggttatgaaaatacaattttcgttagtcagaacttat 244  Q
    ||||||||||||||||  || ||||||| ||||||||||||||||| |||||||||    
T  45267517 gtagtttatgaaaaaaacagcttatgaagatacaattttcgttagtaagaacttat 45267572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 1683935 - 1683881
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttat 244  Q
    |||||||||||||||| || |||| ||| |||||||||||||||  |||||||||    
T  1683935 gtagtttatgaaaaaacagtttataaaactacaattttcgttagcaagaacttat 1683881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 3069888 - 3069834
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttat 244  Q
    |||||||||||||||| || ||||||| |||||||||||  |||| |||||||||    
T  3069888 gtagtttatgaaaaaacagcttatgaagatacaattttcactagtgagaacttat 3069834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 4068167 - 4068221
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttat 244  Q
    |||||||||||||||| |  ||||||| |||| |||||||||||| |||||||||    
T  4068167 gtagtttatgaaaaaacaacttatgaagatactattttcgttagtgagaacttat 4068221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 6337790 - 6337736
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttat 244  Q
    |||||||||||||||| || ||||||| |||||||||| |||||  |||||||||    
T  6337790 gtagtttatgaaaaaacagcttatgaagatacaatttttgttagcgagaacttat 6337736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 16889000 - 16888946
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttat 244  Q
    |||||||||||||||| || ||||||| ||||||||||| ||||| |||| ||||    
T  16889000 gtagtttatgaaaaaacagcttatgaagatacaattttcattagtgagaatttat 16888946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 253
Target Start/End: Original strand, 19395831 - 19395889
Alignment:
Q  195 ttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaaaa 253  Q
    ||||| ||||||| |||||||| ||||||||||||||||| | | |||||| |||||||    
T  19395831 ttatggaaaaataagttatgaagatacaattttcgttagtgaaagcttataaattaaaa 19395889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 26988200 - 26988254
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttat 244  Q
    |||||||||||||||| || ||||||| |||||||| |||||||| | |||||||    
T  26988200 gtagtttatgaaaaaacagcttatgaagatacaattgtcgttagtaaaaacttat 26988254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 37712119 - 37712173
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttat 244  Q
    |||||||||||||||| |  ||||||| |||||| |||||||||| |||||||||    
T  37712119 gtagtttatgaaaaaacaacttatgaagatacaactttcgttagtaagaacttat 37712173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 48819351 - 48819405
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttat 244  Q
    |||||||||||||||| || ||||||| ||||| |||| |||||| |||||||||    
T  48819351 gtagtttatgaaaaaacagcttatgaagatacattttttgttagtgagaacttat 48819405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 244
Target Start/End: Complemental strand, 49738315 - 49738281
Alignment:
Q  210 ttatgaaaatacaattttcgttagtcagaacttat 244  Q
    ||||||||||||||||||||||||| |||||||||    
T  49738315 ttatgaaaatacaattttcgttagtgagaacttat 49738281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 50919539 - 50919581
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgtta 232  Q
    ||||||||| |||||| |||||||||| |||||||||||||||    
T  50919539 gtagtttataaaaaaacaggttatgaagatacaattttcgtta 50919581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 49971303 - 49971352
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaa 239  Q
    |||||||||||||||| || ||| ||| ||||||||||||||||| ||||    
T  49971303 gtagtttatgaaaaaacagcttacgaagatacaattttcgttagtgagaa 49971352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 251
Target Start/End: Original strand, 51162321 - 51162382
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaa 251  Q
    |||||||||||||||| |  ||||||| ||||||||||||||| | ||| |||||| |||||    
T  51162321 gtagtttatgaaaaaacaacttatgaatatacaattttcgttaataagatcttataaattaa 51162382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 41196744 - 41196700
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagt 234  Q
    |||||||||||||||| || ||||||| |||||||||| ||||||    
T  41196744 gtagtttatgaaaaaacagcttatgaagatacaatttttgttagt 41196700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 22117405 - 22117468
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaaaa 253  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||    
T  22117405 gtagtttatgaaaaaatgggttatgaaaatgcaattttcgttagtcagaacttatagattaaaa 22117468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 15179869 - 15179932
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaaaa 253  Q
    |||||||||||| |||| | |||||||||||||||||||||||||||||||||||| |||||||    
T  15179869 gtagtttatgaagaaatggattatgaaaatacaattttcgttagtcagaacttatagattaaaa 15179932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 15184598 - 15184661
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaaaa 253  Q
    |||||||||||||||| || ||||||| ||||||||||||||||| |||||||||| |||||||    
T  15184598 gtagtttatgaaaaaacagtttatgaagatacaattttcgttagtgagaacttataaattaaaa 15184661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 30423828 - 30423786
Alignment:
Q  28 cacaccttgggctcaactcaagtcaaacacacaacatgatgaa 70  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  30423828 cacaccttgggctcaactcaagtcaaacacacaacatgatgaa 30423786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 46176013 - 46175950
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaaaa 253  Q
    ||||||||||||||||||| ||||||| |||||||||||| |||| ||| |||||| |||||||    
T  46176013 gtagtttatgaaaaaatagtttatgaagatacaattttcgctagtaagagcttataaattaaaa 46175950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 17222881 - 17222935
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttat 244  Q
    |||||||||||||||| || ||||||| ||||||||||||||||| |||||||||    
T  17222881 gtagtttatgaaaaaacagattatgaagatacaattttcgttagttagaacttat 17222935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 52700575 - 52700523
Alignment:
Q  193 gtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttata 245  Q
    |||||||||||||||| ||||||| |||| |||||||||||| ||||||||||    
T  52700575 gtttatgaaaaaatagtttatgaagatacgattttcgttagtaagaacttata 52700523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 4603366 - 4603303
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaaaa 253  Q
    |||||||||||||||| || ||||||| ||||||||||||||||| |||  ||||| |||||||    
T  4603366 gtagtttatgaaaaaacagtttatgaagatacaattttcgttagtgagagtttataaattaaaa 4603303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 26206388 - 26206325
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaaaa 253  Q
    |||||||||||||||| || |||||||  ||| |||||||||||| |||||||||| |||||||    
T  26206388 gtagtttatgaaaaaacagtttatgaatgtactattttcgttagtaagaacttataaattaaaa 26206325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 42617264 - 42617201
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaaaa 253  Q
    ||||||||||||||||||| ||||||| |||  |||||||||||| | |||||||| |||||||    
T  42617264 gtagtttatgaaaaaatagtttatgaagatatgattttcgttagtgaaaacttataaattaaaa 42617201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 7148824 - 7148878
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttat 244  Q
    ||||||| |||||||| || |||| |||||||||||||| |||||||||||||||    
T  7148824 gtagtttttgaaaaaacagcttataaaaatacaattttctttagtcagaacttat 7148878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 10046284 - 10046326
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgtta 232  Q
    ||||||||| |||||| ||||||||||||||||||||||||||    
T  10046284 gtagtttataaaaaaacaggttatgaaaatacaattttcgtta 10046326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 48591458 - 48591404
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttat 244  Q
    |||||||||||||||| || ||||||| ||||||||||||||| | |||||||||    
T  48591458 gtagtttatgaaaaaacagcttatgaagatacaattttcgttaatgagaacttat 48591404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 47202877 - 47202940
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaaaa 253  Q
    ||||||||||||||||    ||||||| ||||||||||||||||| ||| |||||| |||||||    
T  47202877 gtagtttatgaaaaaaccatttatgaagatacaattttcgttagtgagatcttataaattaaaa 47202940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 232
Target Start/End: Complemental strand, 4398240 - 4398198
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgtta 232  Q
    ||||||||||||||||| ||||||||| ||| |||||||||||    
T  4398240 gtagtttatgaaaaaattggttatgaagatataattttcgtta 4398198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 18630929 - 18630875
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttat 244  Q
    |||||||||||||||| || ||||||| ||| | ||||||||||| |||||||||    
T  18630929 gtagtttatgaaaaaacagcttatgaagataaagttttcgttagtgagaacttat 18630875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 22273832 - 22273886
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttat 244  Q
    |||||||||||||||| || ||||||| |||||||||| |||||| |||| ||||    
T  22273832 gtagtttatgaaaaaacagcttatgaagatacaatttttgttagtgagaagttat 22273886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 22397339 - 22397285
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttat 244  Q
    |||||||||||||||| |  ||||||| ||||||||||||||||| ||| |||||    
T  22397339 gtagtttatgaaaaaacaacttatgaatatacaattttcgttagtaagatcttat 22397285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 23335694 - 23335748
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttat 244  Q
    |||||||||||||||| || ||||||| ||||||||||| | ||| |||||||||    
T  23335694 gtagtttatgaaaaaacagcttatgaagatacaattttcataagtgagaacttat 23335748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 29877691 - 29877745
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttat 244  Q
    |||||||||||||||  || ||||||| |||||||||| |||||| |||||||||    
T  29877691 gtagtttatgaaaaagcagcttatgaagatacaatttttgttagtgagaacttat 29877745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 46704304 - 46704250
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttat 244  Q
    |||||||||||||||| || ||||||| ||| ||||||| ||||| |||||||||    
T  46704304 gtagtttatgaaaaaacagcttatgaagataaaattttcattagtgagaacttat 46704250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 52274154 - 52274100
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttat 244  Q
    |||||||| ||||||| || ||||||| ||||||||||||| ||| |||||||||    
T  52274154 gtagtttacgaaaaaacagcttatgaagatacaattttcgtcagtgagaacttat 52274100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 251
Target Start/End: Original strand, 8601253 - 8601314
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaa 251  Q
    ||||||||||||||||  ||||||||| |||||||||| |||||| | || ||||| |||||    
T  8601253 gtagtttatgaaaaaactggttatgaagatacaatttttgttagtgaaaaattataaattaa 8601314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 46650323 - 46650367
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagt 234  Q
    ||||||||||||||||||| |||| || | |||||||||||||||    
T  46650323 gtagtttatgaaaaaatagtttataaagaaacaattttcgttagt 46650367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 251
Target Start/End: Complemental strand, 55638114 - 55638054
Alignment:
Q  191 tagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaa 251  Q
    ||||||||||||||| || |||| || ||||||| | ||||||| |||||||||| |||||    
T  55638114 tagtttatgaaaaaacagtttataaagatacaatctccgttagtgagaacttataaattaa 55638054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 2401656 - 2401593
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaaaa 253  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||    
T  2401656 gtagtttatgaaaaaatgggttatgaaaatacaatttttgttagtcagaacttatagattaaaa 2401593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 22898391 - 22898328
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaaaa 253  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||    
T  22898391 gtagtttatgaaaaaatgggttatgaaaatacaattttcgttagtcaaaacttatagattaaaa 22898328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 29774797 - 29774851
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttat 244  Q
    ||||||||||||||||  | ||||||||||||||||||||||||| |||||||||    
T  29774797 gtagtttatgaaaaaacggcttatgaaaatacaattttcgttagtgagaacttat 29774851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 32522080 - 32522017
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaaaa 253  Q
    |||||||||||||||| || | ||||| ||||||||||||||||| ||| |||||| |||||||    
T  32522080 gtagtttatgaaaaaacagttcatgaagatacaattttcgttagtaagagcttataaattaaaa 32522017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 4026977 - 4027031
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttat 244  Q
    |||||||||||||||| || ||||||| |||||||||| |||||| |||||||||    
T  4026977 gtagtttatgaaaaaacagcttatgaagatacaatttttgttagtgagaacttat 4027031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 38216071 - 38216125
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttat 244  Q
    |||||||| ||||||||||  |||||| ||||||||||||||||| |||||||||    
T  38216071 gtagtttaggaaaaaatagcatatgaagatacaattttcgttagtgagaacttat 38216125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 38471825 - 38471771
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttat 244  Q
    |||||||||||||||| || |||||||  |||||||||||||||| |||||||||    
T  38471825 gtagtttatgaaaaaacagtttatgaaggtacaattttcgttagtgagaacttat 38471771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 251
Target Start/End: Original strand, 12267049 - 12267110
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaa 251  Q
    ||||||||||||||||||||||||||| ||| ||||||  ||||| | |||||||| |||||    
T  12267049 gtagtttatgaaaaaataggttatgaagatataatttttattagtgaaaacttataaattaa 12267110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 245
Target Start/End: Original strand, 32366201 - 32366256
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttata 245  Q
    |||||||||||||||| || ||||||| |||| |||||||||||| ||| ||||||    
T  32366201 gtagtttatgaaaaaacagtttatgaatatacgattttcgttagtaagagcttata 32366256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 251
Target Start/End: Original strand, 736019 - 736077
Alignment:
Q  193 gtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaa 251  Q
    |||||||||||||||| ||||||| ||| |||||| |||| | |||||||||| |||||    
T  736019 gtttatgaaaaaatagtttatgaagatataatttttgttattgagaacttataaattaa 736077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 251
Target Start/End: Original strand, 5516127 - 5516189
Alignment:
Q  190 gtagtttatgaaaaaat-aggttatgaaaatacaattttcgttagtcagaacttatatattaa 251  Q
    ||||||||||||||||  || |||| |||||||||||||||||||| ||| |||||| |||||    
T  5516127 gtagtttatgaaaaaaacagtttataaaaatacaattttcgttagtgagagcttataaattaa 5516189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 243
Target Start/End: Original strand, 12223904 - 12223957
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaactta 243  Q
    |||||||||||||||| || ||||||| |||| |||||| ||||| ||||||||    
T  12223904 gtagtttatgaaaaaacagtttatgaagataccattttcattagtgagaactta 12223957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 251
Target Start/End: Complemental strand, 23956298 - 23956237
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaa 251  Q
    |||||||||| ||||| || |||| || ||||||||||||||| | |||||||||| |||||    
T  23956298 gtagtttatggaaaaacagtttataaagatacaattttcgttaatgagaacttataaattaa 23956237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 33321346 - 33321302
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagt 234  Q
    |||||||||||||||| || ||||||| |||||||||| ||||||    
T  33321346 gtagtttatgaaaaaacagcttatgaagatacaatttttgttagt 33321302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 780602 - 780539
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaaaa 253  Q
    ||||||||||||||||| |||||| |||||||||||||| |||||||||||||||| |||||||    
T  780602 gtagtttatgaaaaaatgggttatcaaaatacaattttcattagtcagaacttatagattaaaa 780539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 20458592 - 20458529
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaaaa 253  Q
    ||||||||| |||||||  ||||||||||||||||||||||| ||||||||||||| |||||||    
T  20458592 gtagtttataaaaaaatgtgttatgaaaatacaattttcgttggtcagaacttatagattaaaa 20458529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 41419553 - 41419607
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttat 244  Q
    |||||||||||||||| || ||||||| ||||||||||||||||| |||||||||    
T  41419553 gtagtttatgaaaaaacagcttatgaagatacaattttcgttagtgagaacttat 41419607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 28357193 - 28357235
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgtta 232  Q
    |||||||||||||||| |||||||||| |||||||||||||||    
T  28357193 gtagtttatgaaaaaacaggttatgaagatacaattttcgtta 28357235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 28625532 - 28625582
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaac 240  Q
    |||||||||||||||| || ||||||| ||||||||||||||||| |||||    
T  28625532 gtagtttatgaaaaaacagcttatgaagatacaattttcgttagtgagaac 28625582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 35536898 - 35536951
Alignment:
Q  191 tagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttat 244  Q
    ||||||||||||||| || ||||||| ||||||||||||||| | |||||||||    
T  35536898 tagtttatgaaaaaacagcttatgaagatacaattttcgttactgagaacttat 35536951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 244
Target Start/End: Original strand, 6144794 - 6144844
Alignment:
Q  194 tttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttat 244  Q
    ||||||||||||||| ||||||| |||||||||| |||||  |||||||||    
T  6144794 tttatgaaaaaatagcttatgaatatacaatttttgttagcgagaacttat 6144844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 251
Target Start/End: Original strand, 11991360 - 11991417
Alignment:
Q  193 gtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaa 251  Q
    |||||||||||||||| ||||||| ||||||||||||||||| |||  ||||| |||||    
T  11991360 gtttatgaaaaaatag-ttatgaacatacaattttcgttagtgagagtttataaattaa 11991417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 13060636 - 13060582
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttat 244  Q
    |||||||||||||||| || |||||||  ||| |||||||||||| |||||||||    
T  13060636 gtagtttatgaaaaaacagcttatgaagttaccattttcgttagtgagaacttat 13060582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 17657294 - 17657348
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttat 244  Q
    |||||||||||||||| |  ||||||| |||| |||||||||||| |||||||||    
T  17657294 gtagtttatgaaaaaacatcttatgaagatacgattttcgttagtgagaacttat 17657348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 43319055 - 43319109
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttat 244  Q
    |||||||||||||||| || |||||||  || ||||||||||||| |||||||||    
T  43319055 gtagtttatgaaaaaacagtttatgaaggtataattttcgttagtgagaacttat 43319109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 251
Target Start/End: Original strand, 27805967 - 27806028
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaa 251  Q
    |||||||||||||||| | ||||| || |||||||||| |||||| | |||||||| |||||    
T  27805967 gtagtttatgaaaaaacatgttataaagatacaatttttgttagtgaaaacttataaattaa 27806028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 243
Target Start/End: Original strand, 28357404 - 28357457
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaactta 243  Q
    |||||||||||||||| || |||||||  | |||||||||||||| ||||||||    
T  28357404 gtagtttatgaaaaaacagtttatgaaggtccaattttcgttagtgagaactta 28357457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 251
Target Start/End: Complemental strand, 29418786 - 29418725
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaa 251  Q
    |||||||||||||||| |  |||||||  |||||||||||||||| |||| ||||| |||||    
T  29418786 gtagtttatgaaaaaacaatttatgaaggtacaattttcgttagtgagaatttataaattaa 29418725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 42852075 - 42852127
Alignment:
Q  191 tagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttat 244  Q
    ||||||||||||||| |  |||| |||||||||||||||||||| |||||||||    
T  42852075 tagtttatgaaaaaacaacttat-aaaatacaattttcgttagtgagaacttat 42852127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 230
Target Start/End: Original strand, 15122596 - 15122636
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgt 230  Q
    |||||||||||||||| || ||||||| |||||||||||||    
T  15122596 gtagtttatgaaaaaacagtttatgaagatacaattttcgt 15122636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 37778185 - 37778248
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaaaa 253  Q
    ||||||||||||||||| ||||||||| |||||||||| |||||| |||||||||| |||||||    
T  37778185 gtagtttatgaaaaaatcggttatgaagatacaatttttgttagtgagaacttataaattaaaa 37778248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 29614245 - 29614308
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaaaa 253  Q
    |||||||||||||||| || ||||||| ||||||||||||||||| ||| |||||| |||||||    
T  29614245 gtagtttatgaaaaaacagtttatgaagatacaattttcgttagtgagagcttataaattaaaa 29614308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 3645354 - 3645417
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaaaa 253  Q
    |||||||||||||||| || | ||||| ||||||||||||||||| ||| |||||| |||||||    
T  3645354 gtagtttatgaaaaaacagttcatgaagatacaattttcgttagtgagagcttataaattaaaa 3645417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 53218074 - 53218011
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaaaa 253  Q
    |||||||||||||||| |  || |||| ||||||||||||||||| |||||||||| |||||||    
T  53218074 gtagtttatgaaaaaacaacttttgaagatacaattttcgttagtgagaacttataaattaaaa 53218011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 28741248 - 28741194
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttat 244  Q
    |||||||||||||||| || |||||||  |||||||||||||||| |||||||||    
T  28741248 gtagtttatgaaaaaacagattatgaaggtacaattttcgttagtgagaacttat 28741194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 253
Target Start/End: Complemental strand, 29830663 - 29830610
Alignment:
Q  200 aaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaaaa 253  Q
    |||||| || ||||||| ||||||||||||||||| |||||||||| |||||||    
T  29830663 aaaaaacagtttatgaagatacaattttcgttagtgagaacttataaattaaaa 29830610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 251
Target Start/End: Complemental strand, 42956213 - 42956152
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaa 251  Q
    ||||||||||| |||| || |||| || ||||||||||||||||| |||||||||| |||||    
T  42956213 gtagtttatgataaaacagcttataaagatacaattttcgttagtgagaacttataaattaa 42956152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 20894554 - 20894617
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaaaa 253  Q
    ||||||| |||||||| || | ||||| ||||||||||||||||| ||| |||||| |||||||    
T  20894554 gtagtttttgaaaaaacagttcatgaagatacaattttcgttagtgagagcttataaattaaaa 20894617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 251
Target Start/End: Complemental strand, 17752162 - 17752104
Alignment:
Q  193 gtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaa 251  Q
    |||||||||| |  || ||||||| ||||||||||||||||| |||||||||| |||||    
T  17752162 gtttatgaaagatcagtttatgaagatacaattttcgttagtaagaacttataaattaa 17752104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 251
Target Start/End: Complemental strand, 19053482 - 19053424
Alignment:
Q  193 gtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaa 251  Q
    |||||||||| |  || ||||||| ||||||||||||||||| |||||||||| |||||    
T  19053482 gtttatgaaagatcagtttatgaagatacaattttcgttagtaagaacttataaattaa 19053424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 253
Target Start/End: Complemental strand, 37456467 - 37456405
Alignment:
Q  191 tagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaaaa 253  Q
    |||||||||||||||||  |||| || |||||||||| |||||| |||| ||||| |||||||    
T  37456467 tagtttatgaaaaaataatttataaagatacaatttttgttagtaagaatttataaattaaaa 37456405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 40240611 - 40240557
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttat 244  Q
    |||||||||||||||| |  ||||||| ||||||||||||||||| ||| |||||    
T  40240611 gtagtttatgaaaaaacaacttatgaagatacaattttcgttagtgagagcttat 40240557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 43079968 - 43079914
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttat 244  Q
    |||||||||||||||| || ||||||| ||||||||||||| | | |||||||||    
T  43079968 gtagtttatgaaaaaacagcttatgaagatacaattttcgtgattgagaacttat 43079914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 243
Target Start/End: Original strand, 585072 - 585125
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaactta 243  Q
    |||||||||||||||| |  ||||||| |||||||||||||||||  |||||||    
T  585072 gtagtttatgaaaaaacaacttatgaagatacaattttcgttagtttgaactta 585125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 20174973 - 20174920
Alignment:
Q  191 tagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttat 244  Q
    ||||||||||||||| |  ||||||| ||||||||||||||||| ||| |||||    
T  20174973 tagtttatgaaaaaacaacttatgaatatacaattttcgttagtaagatcttat 20174920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 251
Target Start/End: Complemental strand, 43971880 - 43971820
Alignment:
Q  191 tagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaa 251  Q
    |||||||||| |||| |  ||||||| ||| ||||||||||||| ||||||||||| ||||    
T  43971880 tagtttatgagaaaacaatttatgaagataaaattttcgttagtgagaacttatattttaa 43971820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 37410947 - 37410884
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaaaa 253  Q
    |||||||||||||||| || | ||||| ||||||||||||||||| |||||||||| |||||||    
T  37410947 gtagtttatgaaaaaacagttcatgaagatacaattttcgttagtaagaacttataaattaaaa 37410884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 38338885 - 38338822
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaaaa 253  Q
    ||||||||||||||||||| ||||||| |||  |||||||||||| |||||||||| |||||||    
T  38338885 gtagtttatgaaaaaatagtttatgaagatatgattttcgttagtgagaacttataaattaaaa 38338822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 8216937 - 8216888
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaa 239  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||| ||||    
T  8216937 gtagtttatgaaaaagtaggttatgaagatacaattttcgttagtaagaa 8216888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 13131491 - 13131545
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttat 244  Q
    |||||||||||||||| || |||||||||||||||||| ||| || |||||||||    
T  13131491 gtagtttatgaaaaaacagcttatgaaaatacaatttttgtttgtgagaacttat 13131545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 24350549 - 24350499
Alignment:
Q  194 tttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttat 244  Q
    ||||||||||||||| ||||||| ||| ||||||||||||| |||||||||    
T  24350549 tttatgaaaaaatagcttatgaagatataattttcgttagtaagaacttat 24350499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 11988248 - 11988311
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaaaa 253  Q
    |||||| |||||||||  | ||||||| ||||||||||||||||| ||| |||||| |||||||    
T  11988248 gtagttcatgaaaaaaccgtttatgaagatacaattttcgttagtgagagcttataaattaaaa 11988311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 12607131 - 12607194
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaaaa 253  Q
    ||||||||||||||||  | ||||||| ||||||||| ||||||| ||| |||||| |||||||    
T  12607131 gtagtttatgaaaaaacggtttatgaagatacaatttccgttagtgagagcttataaattaaaa 12607194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 42363351 - 42363288
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaaaa 253  Q
    ||||||||||||||||  | ||||||| |||||||||| |||||| ||||||| || |||||||    
T  42363351 gtagtttatgaaaaaaccgtttatgaagatacaatttttgttagtgagaacttttaaattaaaa 42363288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 10298960 - 10298906
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttat 244  Q
    |||||||||||||||| || ||||||| |||||||||| |||| | |||||||||    
T  10298960 gtagtttatgaaaaaacagcttatgaagatacaatttttgttaatgagaacttat 10298906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 16972390 - 16972336
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttat 244  Q
    |||||| ||||||||| || ||||||| ||||||||||||||||| | |||||||    
T  16972390 gtagttcatgaaaaaacagcttatgaagatacaattttcgttagtgataacttat 16972336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 9131161 - 9131108
Alignment:
Q  191 tagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttat 244  Q
    |||||| |||| ||| || ||||||| |||||||||||||||||| ||||||||    
T  9131161 tagtttctgaagaaacagcttatgaagatacaattttcgttagtcggaacttat 9131108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 251
Target Start/End: Complemental strand, 24866985 - 24866924
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaa 251  Q
    |||||||||||||||| || |||||||  ||||||||||||||   |||||||||| |||||    
T  24866985 gtagtttatgaaaaaacagcttatgaaggtacaattttcgttatcgagaacttataaattaa 24866924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 35168475 - 35168426
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaa 239  Q
    |||||||||||||||| || ||||||| ||||||||||||| ||| ||||    
T  35168475 gtagtttatgaaaaaacagtttatgaagatacaattttcgtcagttagaa 35168426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 251
Target Start/End: Original strand, 38895711 - 38895772
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaa 251  Q
    ||||||||||||||||||  ||||||| ||||||| || |||||| | |||||||| |||||    
T  38895711 gtagtttatgaaaaaataatttatgaagatacaatatttgttagtgaaaacttataaattaa 38895772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 251
Target Start/End: Complemental strand, 34338400 - 34338356
Alignment:
Q  207 aggttatgaaaatacaattttcgttagtcagaacttatatattaa 251  Q
    |||||||||| ||||||||||||||||| | |||||||| |||||    
T  34338400 aggttatgaagatacaattttcgttagttaaaacttatagattaa 34338356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 29378697 - 29378751
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttat 244  Q
    |||||||||||||||| || ||||||| ||||||||||||||||| |||||||||    
T  29378697 gtagtttatgaaaaaacagcttatgaagatacaattttcgttagtaagaacttat 29378751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 194 - 253
Target Start/End: Original strand, 22575642 - 22575701
Alignment:
Q  194 tttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaaaa 253  Q
    |||||||||||| || ||||||| ||||||||||||||||| ||| |||||| |||||||    
T  22575642 tttatgaaaaaacagtttatgaagatacaattttcgttagtaagagcttataaattaaaa 22575701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 47654448 - 47654394
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttat 244  Q
    |||||||||||||||| || |||||||  |||||||||||||||| |||||||||    
T  47654448 gtagtttatgaaaaaacagtttatgaaggtacaattttcgttagtgagaacttat 47654394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 251
Target Start/End: Original strand, 22032814 - 22032875
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaa 251  Q
    |||||||||||||||| |  |||||||  |||||||||||||||| |||||||||| |||||    
T  22032814 gtagtttatgaaaaaacaatttatgaaggtacaattttcgttagtgagaacttataaattaa 22032875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 16958867 - 16958930
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaaaa 253  Q
    ||||||||||||||||  | ||||||| ||||||||||||||||| | | |||||| |||||||    
T  16958867 gtagtttatgaaaaaaccgtttatgaagatacaattttcgttagtaaaagcttataaattaaaa 16958930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 23137197 - 23137134
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaaaa 253  Q
    |||||||||| |||||| | ||||||| ||||||||||| ||||| ||| |||||| |||||||    
T  23137197 gtagtttatgtaaaaatcgtttatgaagatacaattttcattagtgagagcttataaattaaaa 23137134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 44799454 - 44799517
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaaaa 253  Q
    ||||||| ||||||||||| ||||||| ||| ||| ||||||||| ||| |||||| |||||||    
T  44799454 gtagtttttgaaaaaatagtttatgaagatagaatattcgttagtgagagcttataaattaaaa 44799517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 2194078 - 2194013
Alignment:
Q  190 gtagtttatgaaaaaa--taggttatgaaaatacaattttcgttagtcagaacttatatattaaaa 253  Q
    ||||||||||||||||  ||  ||||||| ||| ||||||||||||| |||||||||| |||||||    
T  2194078 gtagtttatgaaaaaaaataatttatgaagatataattttcgttagttagaacttataaattaaaa 2194013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 251
Target Start/End: Original strand, 12473405 - 12473466
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaa 251  Q
    |||||||||||||||| || |||| || | |||||||||||| || |||||||||| |||||    
T  12473405 gtagtttatgaaaaaacagtttataaagaaacaattttcgtttgtgagaacttataaattaa 12473466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 243
Target Start/End: Original strand, 46744005 - 46744058
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaactta 243  Q
    |||||| ||||||||| ||  |||||| ||||||||||||||||| ||||||||    
T  46744005 gtagttaatgaaaaaacagcatatgaagatacaattttcgttagtgagaactta 46744058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0332 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 251
Target Start/End: Complemental strand, 14780 - 14719
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaa 251  Q
    |||||||||||||||  || |||| || ||||||||||||||||| |||||||||| |||||    
T  14780 gtagtttatgaaaaatcagtttataaatatacaattttcgttagtgagaacttataaattaa 14719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0512 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 251
Target Start/End: Original strand, 4118 - 4177
Alignment:
Q  191 tagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttatatattaa 251  Q
    |||||||||||||||||| ||||| || ||||||||||||||||  ||||||||| |||||    
T  4118 tagtttatgaaaaaatagcttatgtaa-tacaattttcgttagtgggaacttataaattaa 4177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 245
Target Start/End: Original strand, 178563 - 178608
Alignment:
Q  200 aaaaaataggttatgaaaatacaattttcgttagtcagaacttata 245  Q
    ||||||||| ||||||| ||||||||||||||||| ||| ||||||    
T  178563 aaaaaatagtttatgaagatacaattttcgttagtaagagcttata 178608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1088 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1088
Description:

Target: scaffold1088; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 1346 - 1390
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagt 234  Q
    |||||||||||||||| | ||||| || |||||||||||||||||    
T  1346 gtagtttatgaaaaaacaagttataaatatacaattttcgttagt 1390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 97240 - 97189
Alignment:
Q  190 gtagtttatgaaaaaataggttatgaaaatacaattttcgttagtcagaacttat 244  Q
    |||||||||||||||| || ||||||   |||||||||||||||| |||||||||    
T  97240 gtagtttatgaaaaaacagcttatga---tacaattttcgttagtgagaacttat 97189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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