View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0767_low_13 (Length: 438)
Name: NF0767_low_13
Description: NF0767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0767_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 106 - 428
Target Start/End: Original strand, 56044066 - 56044388
Alignment:
| Q |
106 |
ctggttgatgacgaaaaagtgtgaatttaatttggaatatatatattttttcctatctttctttcttaaaatattctgtgatcaatctgctttaaatagt |
205 |
Q |
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| T |
56044066 |
ctggttgatgacgaaaaagtgtgaatttaatttggaaaatatatattttttcctatctttctttgttaaaatatgctgtgatcaatctgctttaaatagt |
56044165 |
T |
|
| Q |
206 |
tgttaactaaaatttcattttaatttaatgttgtaaattgagttgcagatattgggctatggatgggctgggattctgaggaggtatctggtggaccctg |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56044166 |
tgttaactaaaatttcattttaatttaatgttgtaaattgagttgcagatattgggctatggatgggctgggattctgaggaggtatctggtggaccctg |
56044265 |
T |
|
| Q |
306 |
ttgaaatgtggtggccatcaaaccttgcacaagtctctctctttaggttcattcttttccccttttcttccatattacgttttattcaattggtacagac |
405 |
Q |
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| T |
56044266 |
ttgaaatgtggtggccatcaaaccttgcacaagtctctctctttaggttcattcttttccccttttcttccatattacgttttattcaattggtacagac |
56044365 |
T |
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| Q |
406 |
ttatttacttcaatatccctttg |
428 |
Q |
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||||||||||||||| ||||||| |
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| T |
56044366 |
ttatttacttcaataaccctttg |
56044388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 30 - 73
Target Start/End: Original strand, 56043996 - 56044039
Alignment:
| Q |
30 |
tgtagtacttgttttgttatctacaagtctatctggaatttgtt |
73 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56043996 |
tgtagtacttgttttgttatctacaagtctatctggaatttgtt |
56044039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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