View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0767_low_15 (Length: 420)
Name: NF0767_low_15
Description: NF0767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0767_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 1e-97; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 16 - 216
Target Start/End: Complemental strand, 42815711 - 42815512
Alignment:
| Q |
16 |
gttgctgttgcttctcgcggtttctgattcggtagggtttcgcttcgctggatttggattccattgttgttgatgctctcaagatcattcaagactccgt |
115 |
Q |
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| T |
42815711 |
gttgctgttgcttctcgcggtttctgattcggtagggtttcgcttcgctggatttggattccattgttgttgatgctctcaagatcattcaagactccgt |
42815612 |
T |
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| Q |
116 |
ttcttatcgttcttgaagaattttagatttattttcatcgttccggtggttcgatttattcgagcgtaacctagatagaaacaaaaaattagaaagaaag |
215 |
Q |
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| T |
42815611 |
ttcttatcgttcttgaagaattttagatttattttaatcgttctggtggttcgatttattcgatcgtaacctagatagaaa-aaaaaattagaaagaaag |
42815513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 20 - 216
Target Start/End: Complemental strand, 35064677 - 35064481
Alignment:
| Q |
20 |
ctgttgcttctcgcggtttctgattcggtagggtttcgcttcgctggatttggattccattgttgttgatgctctcaagatcattcaagactccgtttct |
119 |
Q |
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| T |
35064677 |
ctgttgcttctcgtggtttctaattcggtagggtttcgcttcgctggatttggattccatttttgttgatgctctcaagatcattcaagactccgtttct |
35064578 |
T |
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| Q |
120 |
tatcgttcttgaagaattttagatttattttcatcgttccggtggttcgatttattcgagcgtaacctagatagaaacaaaaaattagaaagaaaga |
216 |
Q |
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| T |
35064577 |
tatcgttcttgaagaaatttagatttattttcattgttatggtggttcgatttattcgatcgtgacctagataggaaaaaaaaagtagagagaaaga |
35064481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 16 - 153
Target Start/End: Complemental strand, 43025870 - 43025729
Alignment:
| Q |
16 |
gttgctgttgcttctcgcggtttctgattcggtagggtttcgcttcgctggatttggattccattgttgttgatgctctcaagatcattcaagactccgt |
115 |
Q |
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| T |
43025870 |
gttgctgttgctttacgcggtttcttgttcggtagggtttcgcttcgctggatttggattccattgttgttgatgctctcaagatcattcaagactccgt |
43025771 |
T |
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| Q |
116 |
tt----cttatcgttcttgaagaattttagatttattttcat |
153 |
Q |
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| T |
43025770 |
ttcttacttatcgttcttgaagagttttagatttattttcat |
43025729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 325 - 409
Target Start/End: Complemental strand, 42815403 - 42815319
Alignment:
| Q |
325 |
caatagagtattctacaatggcggtgtattataaatttaagagtgcaaaagattataattcaattccaatggatggtcctttcat |
409 |
Q |
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| T |
42815403 |
caatagagtattctacaatggcggtgtattataaatttaagagtgcaaaagattataattcaattccaatggatggtcctttcat |
42815319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 325 - 409
Target Start/End: Complemental strand, 35064362 - 35064278
Alignment:
| Q |
325 |
caatagagtattctacaatggcggtgtattataaatttaagagtgcaaaagattataattcaattccaatggatggtcctttcat |
409 |
Q |
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| T |
35064362 |
caatagagtaatttaccatggcggtgtattataaatttaagagtgcaaaagattattattcaattcctatggatggtcctttcat |
35064278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 326 - 406
Target Start/End: Complemental strand, 43025617 - 43025537
Alignment:
| Q |
326 |
aatagagtattctacaatggcggtgtattataaatttaagagtgcaaaagattataattcaattccaatggatggtccttt |
406 |
Q |
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| T |
43025617 |
aatagagtaatttacaatggcggtgtattataaatttaagagtgcaaaagattaccattcaattccaatggatggtccttt |
43025537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 342 - 412
Target Start/End: Original strand, 41562476 - 41562546
Alignment:
| Q |
342 |
atggcggtgtattataaatttaagagtgcaaaagattataattcaattccaatggatggtcctttcatctc |
412 |
Q |
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| T |
41562476 |
atggcggtgtattataaatttaaaagtgcaagagattatgattcaatttccatggatggtcctttcatctc |
41562546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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