View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0767_low_16 (Length: 407)
Name: NF0767_low_16
Description: NF0767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0767_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 234 - 402
Target Start/End: Original strand, 33815799 - 33815964
Alignment:
| Q |
234 |
ggttcgtaaataattaatttggtagattgttaaatctgtctaaaaaataaatagcctatatctgatagcggacgtgcctatagtggataacatataagtt |
333 |
Q |
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| T |
33815799 |
ggttggtaaataattaacgtggtagattgttaaatctgtctaaaaaa---atagcctatatctgatagcggacgtgcctatagtggataacatataagtt |
33815895 |
T |
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| Q |
334 |
agctgatagttgataaattaatatgttgagttttttacgtgtttggttaaactagttgttcatctcact |
402 |
Q |
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| T |
33815896 |
agttgatagttgataaattaatatgttgagttttttacgtgtttggttaaactagttgttcaactcact |
33815964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 29 - 169
Target Start/End: Original strand, 33815594 - 33815734
Alignment:
| Q |
29 |
agaagctggattgatggcctttctaatcttagaaacattccaagcagtattagcagcatgtcctgctgttgcaaatacatgctcagtagcttcccctgct |
128 |
Q |
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| T |
33815594 |
agaagctggattgatggcctttctaatcttagaaacattccaagcagtattagcagcatgtcctgcagttgcaaatacatgctcagttgcttcccctgct |
33815693 |
T |
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| Q |
129 |
tcttccccatacctgtataaccaagacacacactcttgtta |
169 |
Q |
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| T |
33815694 |
tcttccccatacctgtataaccaagacacacactcttgtta |
33815734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 29 - 124
Target Start/End: Complemental strand, 43161628 - 43161533
Alignment:
| Q |
29 |
agaagctggattgatggcctttctaatcttagaaacattccaagcagtattagcagcatgtcctgctgttgcaaatacatgctcagtagcttcccc |
124 |
Q |
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|||||||||||||||||||||||| |||||| |||||||||||||||| ||||| |||||||| || |||||||| |||||||| ||||||||||| |
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| T |
43161628 |
agaagctggattgatggcctttcttatcttaaaaacattccaagcagtgttagctgcatgtcccgcagttgcaaacacatgctctgtagcttcccc |
43161533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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