View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0767_low_20 (Length: 392)

Name: NF0767_low_20
Description: NF0767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0767_low_20
NF0767_low_20
[»] chr3 (8 HSPs)
chr3 (1-316)||(33270466-33270782)
chr3 (1-72)||(14186659-14186729)
chr3 (1-78)||(4844505-4844582)
chr3 (1-78)||(4870201-4870278)
chr3 (3-72)||(16354888-16354957)
chr3 (3-72)||(27093357-27093426)
chr3 (3-64)||(37788461-37788522)
chr3 (3-72)||(53412956-53413025)
[»] chr8 (6 HSPs)
chr8 (318-385)||(42467166-42467233)
chr8 (1-76)||(968369-968444)
chr8 (1-72)||(3624591-3624662)
chr8 (13-72)||(19703493-19703552)
chr8 (3-65)||(6536538-6536600)
chr8 (15-72)||(2203503-2203560)
[»] chr5 (8 HSPs)
chr5 (230-316)||(25707440-25707526)
chr5 (3-76)||(16773814-16773887)
chr5 (13-78)||(892480-892545)
chr5 (1-78)||(14495799-14495876)
chr5 (17-72)||(30883208-30883263)
chr5 (1-78)||(29692380-29692457)
chr5 (3-72)||(34984817-34984886)
chr5 (12-65)||(37148044-37148097)
[»] chr7 (10 HSPs)
chr7 (3-72)||(43215195-43215264)
chr7 (13-72)||(22760874-22760933)
chr7 (3-72)||(17041008-17041077)
chr7 (3-72)||(26459406-26459475)
chr7 (17-76)||(21877815-21877874)
chr7 (3-69)||(33222384-33222450)
chr7 (44-78)||(36803664-36803698)
chr7 (3-72)||(2962470-2962539)
chr7 (3-72)||(23552129-23552198)
chr7 (3-72)||(25655224-25655293)
[»] chr2 (8 HSPs)
chr2 (17-76)||(12994386-12994445)
chr2 (3-65)||(11251105-11251167)
chr2 (3-72)||(19244120-19244189)
chr2 (4-72)||(42327392-42327460)
chr2 (1-72)||(42602565-42602636)
chr2 (7-72)||(34041588-34041653)
chr2 (3-72)||(40416386-40416455)
chr2 (13-73)||(12086135-12086195)
[»] chr1 (6 HSPs)
chr1 (1-52)||(51281382-51281433)
chr1 (3-78)||(8177178-8177253)
chr1 (3-78)||(11063561-11063636)
chr1 (3-72)||(9165191-9165260)
chr1 (4-72)||(15786317-15786385)
chr1 (16-76)||(34460918-34460978)
[»] chr4 (3 HSPs)
chr4 (3-72)||(37109347-37109416)
chr4 (3-66)||(7949450-7949513)
chr4 (3-72)||(7292794-7292863)
[»] chr6 (3 HSPs)
chr6 (1-63)||(6385882-6385944)
chr6 (3-72)||(33549115-33549184)
chr6 (4-72)||(19638001-19638069)
[»] scaffold0258 (1 HSPs)
scaffold0258 (3-72)||(15319-15388)


Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 33270466 - 33270782
Alignment:
Q  1 cggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccactagaccaactcaaa-tccacaagaaaattaacagtta 99  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||    
T  33270466 cggagagaatgaaacctgagacctttaggtggaacacacttagaggtcccaagtcaataccaccagaccaacccaaaatccacaagaaaattaacagtta 33270565  T
Q  100 aatgatgaaattaattaagtacctgaaaactccaaatgcaacttgaaaaattccagcaaataatgttacagtaaagacaaaatttctgtaaccatcatga 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33270566 aatgatgaaattaattaagtacctgaaaactccaaatgcaacttgaaaaattccagcaaataatgttacagtaaagacaaaatttctgtaaccatcatga 33270665  T
Q  200 tttaaatctggatcaaccactttgtgacataaggaagatagcagcagtgacactacagctacaggtccaattgcaatttctcttgaactccccatcacag 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  33270666 tttaaatctggatcaaccactttgtgacataaggaagatagcagcagtgacactacggctacaggtccaattgcaatttctcttgaactccccatcacag 33270765  T
Q  300 catagataagaggagga 316  Q
    |||||||||||||||||    
T  33270766 catagataagaggagga 33270782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 14186729 - 14186659
Alignment:
Q  1 cggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccactagaccaac 72  Q
    ||||||||||  ||||||||||||| ||| ||||||||| |  |||||||||| |||||||||||| |||||    
T  14186729 cggagagaatcgaacctgagaccttgaggaggagcacac-tccaggtcccaagacaataccactaggccaac 14186659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 4844505 - 4844582
Alignment:
Q  1 cggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccactagaccaactcaaat 78  Q
    ||||||||||  | ||||||||||  ||| ||||||||||   || ||||||||||||||||| |||||||| |||||    
T  4844505 cggagagaatcgatcctgagacctcgaggaggagcacactcccagatcccaagtcaataccaccagaccaacccaaat 4844582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 4870201 - 4870278
Alignment:
Q  1 cggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccactagaccaactcaaat 78  Q
    ||||||||||  | ||||||||||  ||| ||||||||||   || ||||||||||||||||| |||||||| |||||    
T  4870201 cggagagaatcgatcctgagacctcgaggaggagcacactcccagatcccaagtcaataccaccagaccaacccaaat 4870278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 16354888 - 16354957
Alignment:
Q  3 gagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccactagaccaac 72  Q
    ||||||||  ||||||||||| | ||| |||||||||| | |||| ||||| |||||||||||| |||||    
T  16354888 gagagaatcgaacctgagaccctgaggaggagcacactcacaggttccaagccaataccactaggccaac 16354957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 27093357 - 27093426
Alignment:
Q  3 gagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccactagaccaac 72  Q
    |||||||| |||||||||||||| ||| ||||||||||   | || ||||| |||||||||||| |||||    
T  27093357 gagagaatcaaacctgagaccttgaggaggagcacactcccaagttccaagccaataccactaggccaac 27093426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 37788461 - 37788522
Alignment:
Q  3 gagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccact 64  Q
    ||||||||  ||||||||||||| ||| ||||||||||   |||| ||||||||||||||||    
T  37788461 gagagaatcgaacctgagaccttgaggaggagcacactcctaggttccaagtcaataccact 37788522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 53413025 - 53412956
Alignment:
Q  3 gagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccactagaccaac 72  Q
    ||||||||  ||||||||||||| ||| ||||||||||   ||||  |||| ||||||||||||||||||    
T  53413025 gagagaattgaacctgagaccttgaggaggagcacactcccaggttacaagccaataccactagaccaac 53412956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 318 - 385
Target Start/End: Complemental strand, 42467233 - 42467166
Alignment:
Q  318 cagagagcttgaaactggtgaaggggaagatcgtatgggtactatgcaacaagttggtgatgctcgtt 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42467233 cagagagcttgaaactggtgaaggggaagatcgtatgggtactatgcaacaagttggtgatgctcgtt 42467166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 968444 - 968369
Alignment:
Q  1 cggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccactagaccaactcaa 76  Q
    ||||||||||  ||||||||||||  ||| ||||||||||   |||||||||| ||||||||| || |||||||||    
T  968444 cggagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccaggccaactcaa 968369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 3624662 - 3624591
Alignment:
Q  1 cggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccactagaccaac 72  Q
    ||||||||||  ||||||||||||| | | ||||||||||   |||||||||| |||||||||||| |||||    
T  3624662 cggagagaatcgaacctgagaccttgaagaggagcacactcccaggtcccaagccaataccactaggccaac 3624591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 19703493 - 19703552
Alignment:
Q  13 aacctgagacctttaggtggagcacacttagaggtcccaagtcaataccactagaccaac 72  Q
    ||||||||||||| ||| ||||||||||   |||||||||| |||||||||||| |||||    
T  19703493 aacctgagaccttgaggaggagcacactctcaggtcccaagccaataccactaggccaac 19703552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 6536600 - 6536538
Alignment:
Q  3 gagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccacta 65  Q
    ||||||||  ||||||||||||| ||| ||||||||||   |||||||||| |||||||||||    
T  6536600 gagagaattgaacctgagaccttgaggaggagcacactcctaggtcccaagccaataccacta 6536538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 2203560 - 2203503
Alignment:
Q  15 cctgagacctttaggtggagcacacttagaggtcccaagtcaataccactagaccaac 72  Q
    ||||||||||| ||| ||||||||||   |||||||||| |||||||||||| |||||    
T  2203560 cctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaac 2203503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 7e-25; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 230 - 316
Target Start/End: Original strand, 25707440 - 25707526
Alignment:
Q  230 aaggaagatagcagcagtgacactacagctacaggtccaattgcaatttctcttgaactccccatcacagcatagataagaggagga 316  Q
    ||||||||||  ||||  ||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||    
T  25707440 aaggaagataaaagcatagacactacagctacaggtccaattgcaatgtctcttgagcttcccatcacagcatagataagaggagga 25707526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 16773887 - 16773814
Alignment:
Q  3 gagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccactagaccaactcaa 76  Q
    ||||||||  ||||||||||||  ||| ||||||||||   |||||||||||||||||||| ||||||||||||    
T  16773887 gagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagtcaataccaccagaccaactcaa 16773814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 892480 - 892545
Alignment:
Q  13 aacctgagacctttaggtggagcacacttagaggtcccaagtcaataccactagaccaactcaaat 78  Q
    ||||||||||||| ||| |||| |||||  ||||||||||| |||||||||||| ||||| |||||    
T  892480 aacctgagaccttgaggaggagtacactctgaggtcccaagccaataccactaggccaacccaaat 892545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 14495799 - 14495876
Alignment:
Q  1 cggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccactagaccaactcaaat 78  Q
    |||||||||| ||| |||||||||  ||| ||||||||||   || ||||||||||||||||| |||||||| |||||    
T  14495799 cggagagaatcaaatctgagacctcgaggaggagcacactcccagatcccaagtcaataccaccagaccaacccaaat 14495876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 30883208 - 30883263
Alignment:
Q  17 tgagacctttaggtggagcacacttagaggtcccaagtcaataccactagaccaac 72  Q
    ||||||||| ||| ||||||||||   |||||||||| ||||||||||||||||||    
T  30883208 tgagaccttgaggaggagcacactcccaggtcccaagccaataccactagaccaac 30883263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 29692380 - 29692457
Alignment:
Q  1 cggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccactagaccaactcaaat 78  Q
    |||||||||| ||||||||||| || ||| ||||||||||   || ||||||  ||||||||| |||||||| |||||    
T  29692380 cggagagaattaaacctgagactttgaggaggagcacactcccagatcccaatccaataccaccagaccaacccaaat 29692457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 34984886 - 34984817
Alignment:
Q  3 gagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccactagaccaac 72  Q
    ||||||||  ||||| ||||||| ||| ||||||||||   |||| ||||| ||||||||||||||||||    
T  34984886 gagagaatcgaacctaagaccttgaggaggagcacactcccaggttccaagccaataccactagaccaac 34984817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 37148097 - 37148044
Alignment:
Q  12 aaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccacta 65  Q
    |||||||||||||| ||| |||||||||| | ||||| || |||||||||||||    
T  37148097 aaacctgagaccttgaggaggagcacactcacaggtctcaggtcaataccacta 37148044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 43215264 - 43215195
Alignment:
Q  3 gagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccactagaccaac 72  Q
    ||||||||  ||||||||||||| ||| ||||||||||  ||||||||||| ||||||||||||||||||    
T  43215264 gagagaatcgaacctgagaccttgaggaggagcacactccgaggtcccaagccaataccactagaccaac 43215195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 22760933 - 22760874
Alignment:
Q  13 aacctgagacctttaggtggagcacacttagaggtcccaagtcaataccactagaccaac 72  Q
    ||||||||||||| ||| ||||||||||   |||||||||||||||||||| ||||||||    
T  22760933 aacctgagaccttgaggaggagcacactcccaggtcccaagtcaataccaccagaccaac 22760874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 17041008 - 17041077
Alignment:
Q  3 gagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccactagaccaac 72  Q
    ||||||||  ||||||||||||| ||| |||||||||||  || ||||||| |||| |||||||||||||    
T  17041008 gagagaatcgaacctgagaccttgaggaggagcacacttccagatcccaagccaatgccactagaccaac 17041077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 26459406 - 26459475
Alignment:
Q  3 gagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccactagaccaac 72  Q
    ||||||||  ||||||||||||| ||| ||||||||||   |||||||||| |||||||||||| |||||    
T  26459406 gagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaac 26459475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 21877874 - 21877815
Alignment:
Q  17 tgagacctttaggtggagcacacttagaggtcccaagtcaataccactagaccaactcaa 76  Q
    ||||||||| ||| ||||||| ||   ||||||||||||||||||||||| |||||||||    
T  21877874 tgagaccttaaggaggagcaccctcccaggtcccaagtcaataccactaggccaactcaa 21877815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 33222450 - 33222384
Alignment:
Q  3 gagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccactagacc 69  Q
    ||||||||  ||||||||||||| |||  ||| ||||||  |||||||||| |||||||||||||||    
T  33222450 gagagaatcgaacctgagaccttgaggatgagtacacttccaggtcccaagccaataccactagacc 33222384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 78
Target Start/End: Original strand, 36803664 - 36803698
Alignment:
Q  44 aggtcccaagtcaataccactagaccaactcaaat 78  Q
    ||||||||||||||||||||||||||||| |||||    
T  36803664 aggtcccaagtcaataccactagaccaacccaaat 36803698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 2962539 - 2962470
Alignment:
Q  3 gagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccactagaccaac 72  Q
    ||||||||  ||||||||| ||| ||| |||||||||| | |||| ||||  ||||||||||||||||||    
T  2962539 gagagaatcgaacctgagatcttgaggaggagcacactcacaggttccaaaccaataccactagaccaac 2962470  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 23552198 - 23552129
Alignment:
Q  3 gagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccactagaccaac 72  Q
    ||||||||  ||| ||||||||| ||| ||||||||||   |||||||||||||||| |||||| |||||    
T  23552198 gagagaatcgaacttgagaccttgaggaggagcacactcccaggtcccaagtcaatagcactaggccaac 23552129  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 25655224 - 25655293
Alignment:
Q  3 gagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccactagaccaac 72  Q
    ||||||||  ||||||| ||||| ||| ||| |||||| | || ||||||||||||||||||| ||||||    
T  25655224 gagagaatcgaacctgaaaccttgaggaggatcacactcacagatcccaagtcaataccactaaaccaac 25655293  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 12994386 - 12994445
Alignment:
Q  17 tgagacctttaggtggagcacacttagaggtcccaagtcaataccactagaccaactcaa 76  Q
    ||||||||| ||| ||||||||||   |||||||||||||||||||||||||||||||||    
T  12994386 tgagaccttaaggaggagcacactcccaggtcccaagtcaataccactagaccaactcaa 12994445  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 11251167 - 11251105
Alignment:
Q  3 gagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccacta 65  Q
    |||||||| |||||||||||||| ||| |||||||||||  | |||||||| |||||||||||    
T  11251167 gagagaatcaaacctgagaccttgaggaggagcacacttccaagtcccaagccaataccacta 11251105  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 19244189 - 19244120
Alignment:
Q  3 gagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccactagaccaac 72  Q
    ||||||||  |||||||||||||  || ||||||||||   ||||||||||||||||||| |||||||||    
T  19244189 gagagaatcgaacctgagaccttggggaggagcacactctcaggtcccaagtcaataccagtagaccaac 19244120  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 42327392 - 42327460
Alignment:
Q  4 agagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccactagaccaac 72  Q
    |||||||  ||||||||||||| ||| ||||||||||   |||||||||| |||||||||||| |||||    
T  42327392 agagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaac 42327460  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 42602636 - 42602565
Alignment:
Q  1 cggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccactagaccaac 72  Q
    |||||||||| |||||| ||||||| ||  ||||||||||   |||||||||| |||||||||||| |||||    
T  42602636 cggagagaatcaaacctaagaccttgagaaggagcacactcccaggtcccaagccaataccactaggccaac 42602565  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 34041588 - 34041653
Alignment:
Q  7 gaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccactagaccaac 72  Q
    |||| |||||||||||||| ||| ||||||||||   || ||| |||||||||||||||| |||||    
T  34041588 gaatcaaacctgagaccttgaggaggagcacactctcagatcctaagtcaataccactaggccaac 34041653  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 40416386 - 40416455
Alignment:
Q  3 gagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccactagaccaac 72  Q
    ||||||||  ||||||||||||| ||| |||||| |||   |||| |||||||||||||||||| |||||    
T  40416386 gagagaatcgaacctgagaccttaaggaggagcatactcccaggttccaagtcaataccactaggccaac 40416455  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 12086135 - 12086195
Alignment:
Q  13 aacctgagacctttaggtggagcacacttagaggtcccaagtcaataccactagaccaact 73  Q
    |||| |||||||| ||| |||||||||||  |||||||||| ||||||||| || ||||||    
T  12086135 aacccgagaccttgaggaggagcacacttccaggtcccaagccaataccaccaggccaact 12086195  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 51281433 - 51281382
Alignment:
Q  1 cggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaa 52  Q
    |||||||||| |||||||||||||| ||| ||||||||||| ||||||||||    
T  51281433 cggagagaatcaaacctgagaccttgaggaggagcacactttgaggtcccaa 51281382  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 8177178 - 8177253
Alignment:
Q  3 gagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccactagaccaactcaaat 78  Q
    ||||||||  ||||||| ||||| ||| ||||||||||   || ||||||| |||||||||||| |||||||||||    
T  8177178 gagagaatcgaacctgaaaccttgaggaggagcacactcccagatcccaagccaataccactaggccaactcaaat 8177253  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 11063636 - 11063561
Alignment:
Q  3 gagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccactagaccaactcaaat 78  Q
    ||||||||  ||||| ||||||| ||| ||| |||||||  |||||||||| ||||||||||||| |||| |||||    
T  11063636 gagagaatcgaacctaagaccttgaggaggaacacactttcaggtcccaagccaataccactagatcaacccaaat 11063561  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 9165191 - 9165260
Alignment:
Q  3 gagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccactagaccaac 72  Q
    ||||||||  |||||||||| || ||| ||||||||||   |||||||||| |||||||||||| |||||    
T  9165191 gagagaattgaacctgagactttgaggaggagcacactcccaggtcccaagccaataccactaggccaac 9165260  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 15786317 - 15786385
Alignment:
Q  4 agagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccactagaccaac 72  Q
    |||||||  ||||||||||||| ||| ||||||||||   || ||||||| |||||| |||||||||||    
T  15786317 agagaatcgaacctgagaccttgaggaggagcacactcccagatcccaagccaatactactagaccaac 15786385  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 34460918 - 34460978
Alignment:
Q  16 ctgagacctttaggtggagcacacttagaggtcccaagtcaataccactagaccaactcaa 76  Q
    |||||||||| ||| ||| |||||||  ||||| ||||||||||||||||  |||||||||    
T  34460918 ctgagaccttcaggaggaacacacttttaggtctcaagtcaataccactaagccaactcaa 34460978  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 37109347 - 37109416
Alignment:
Q  3 gagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccactagaccaac 72  Q
    ||||||||  ||||||||||||| ||| ||||||||||   |||||||||| |||||||||||| |||||    
T  37109347 gagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaac 37109416  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 7949450 - 7949513
Alignment:
Q  3 gagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccactag 66  Q
    ||||||||  ||||||||||||| ||| ||||||||||  ||||||||||| ||||||| ||||    
T  7949450 gagagaatcgaacctgagaccttgaggaggagcacactccgaggtcccaagccaataccgctag 7949513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 7292794 - 7292863
Alignment:
Q  3 gagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccactagaccaac 72  Q
    ||||||||  |||||||||| || ||| ||||||||||   |||| ||||| ||||||||||||||||||    
T  7292794 gagagaatcgaacctgagactttgaggaggagcacactcccaggttccaagccaataccactagaccaac 7292863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 6385944 - 6385882
Alignment:
Q  1 cggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccac 63  Q
    ||||||||||  ||||||||||||| ||| |||||||| |   ||||||||||||||||||||    
T  6385944 cggagagaatcgaacctgagaccttaaggaggagcacagtcccaggtcccaagtcaataccac 6385882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 33549184 - 33549115
Alignment:
Q  3 gagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccactagaccaac 72  Q
    ||||||||  ||||||||||||  ||| ||||||||||   |||||||||| ||||||||| ||||||||    
T  33549184 gagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccagaccaac 33549115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 19638001 - 19638069
Alignment:
Q  4 agagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccactagaccaac 72  Q
    ||||||| |||||||||||||| || |||||||||||   |||| ||| | |||||||||| |||||||    
T  19638001 agagaatcaaacctgagaccttgagctggagcacactcccaggttccacgccaataccactggaccaac 19638069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 15319 - 15388
Alignment:
Q  3 gagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccactagaccaac 72  Q
    ||||||||  ||||||||||||  ||| ||||||||||   |||||||||| ||||||||| ||||||||    
T  15319 gagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccagaccaac 15388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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