View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0767_low_21 (Length: 391)
Name: NF0767_low_21
Description: NF0767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0767_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 71 - 378
Target Start/End: Complemental strand, 7168687 - 7168379
Alignment:
| Q |
71 |
aaatatttggtgaagattgaatacaggcttttggtagaattgacaatgtttctgttgaaacatttcccacttcaagattgttgtgcttgtcctgaattgc |
170 |
Q |
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| T |
7168687 |
aaatatttggtgaagattgaatacaggcttttggtagaattgacaatgtttctgttgaaacatttcccacttcaagattgttgtgcttgtcctgaattgc |
7168588 |
T |
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| Q |
171 |
ttgtgaacaagaagaagacccatgaaaagtatttgtcttcattagttttgaagattttatttcagcctagaaataataaacagtgataaaatatttattc |
270 |
Q |
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| T |
7168587 |
ttgtgaacaagaagaagacccatgaaaagtatttgtcttcattagttttgaagattttatttcagcctagaaataataaacagtgataaaatatttattc |
7168488 |
T |
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| Q |
271 |
aagattgaat-nnnnnnnttatatatgtagcaannnnnnnaaaggaaaatcattgtagcaacattatcattaaatatgatgcatcaccttgttcattgtt |
369 |
Q |
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| T |
7168487 |
aagattgaataaaaaaaattatatatgtagcaatttttttaaaggaaaatcattgtagcaacattatcattaaatatgatgcatcaccttgttcattgtt |
7168388 |
T |
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| Q |
370 |
tttctcttc |
378 |
Q |
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| T |
7168387 |
tttctcttc |
7168379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 316 - 378
Target Start/End: Complemental strand, 7178328 - 7178266
Alignment:
| Q |
316 |
aaatcattgtagcaacattatcattaaatatgatgcatcaccttgttcattgtttttctcttc |
378 |
Q |
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| T |
7178328 |
aaatcattgtagcaacattatcattaaatatgatgcatcaccttgtttattgtttttctcttc |
7178266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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