View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0767_low_22 (Length: 377)

Name: NF0767_low_22
Description: NF0767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0767_low_22
NF0767_low_22
[»] chr4 (3 HSPs)
chr4 (154-374)||(33879195-33879415)
chr4 (162-211)||(33878620-33878669)
chr4 (78-132)||(33879128-33879182)
[»] scaffold0386 (2 HSPs)
scaffold0386 (78-227)||(676-825)
scaffold0386 (162-211)||(1284-1333)
[»] chr8 (3 HSPs)
chr8 (154-227)||(38460872-38460945)
chr8 (169-211)||(38460427-38460469)
chr8 (78-132)||(38460794-38460848)
[»] chr5 (5 HSPs)
chr5 (78-227)||(13869741-13869890)
chr5 (154-227)||(27641421-27641494)
chr5 (162-207)||(13869240-13869285)
chr5 (162-207)||(27640875-27640920)
chr5 (78-132)||(27641344-27641398)
[»] chr7 (2 HSPs)
chr7 (154-227)||(29735101-29735174)
chr7 (162-204)||(29735715-29735759)
[»] chr3 (2 HSPs)
chr3 (154-211)||(49850835-49850892)
chr3 (168-211)||(49851428-49851471)


Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 154 - 374
Target Start/End: Original strand, 33879195 - 33879415
Alignment:
Q  154 taatgatatgtcacgatttcattggatgtttgtaagtgccacatgttatgtacgtttccatgtaaaaatttctcatttactttagtcataaattgaaacc 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33879195 taatgatatgtcacgatttcattggatgtttgtaagtgccacatgttatgtacgtttccatgtaaaaatttctcatttactttagtcataaattgaaacc 33879294  T
Q  254 ggaaacatttcattataaattgaaactagaaaaatttcatattcaaaagagacttgagagaaacaaacttcaccataagaaaataaaacaagaagagatt 353  Q
     |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  33879295 agaaacatttcattataaattgaaactagaaaaatttcatactcgaaagagacttgagagaaacaaacttcaccatatgaaaataaaacaagaagagatt 33879394  T
Q  354 tgaataattaaaaaataacca 374  Q
    |||||||||||||||||||||    
T  33879395 tgaataattaaaaaataacca 33879415  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 33878669 - 33878620
Alignment:
Q  162 tgtcacgatttcattggatgtttgtaagtgccacatgttatgtacgtttc 211  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  33878669 tgtcatgatttcattggatgtttgtaagtgccacatgttatgtacgtttc 33878620  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 132
Target Start/End: Original strand, 33879128 - 33879182
Alignment:
Q  78 gacatcatcaataccaagttgcaaaaggatgacaatggttctatttctattttca 132  Q
    ||||| ||| |||||| |||||||||||||||| |||||||| ||||||||||||    
T  33879128 gacatgatctataccacgttgcaaaaggatgacgatggttctgtttctattttca 33879182  T

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Target: scaffold0386 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 78 - 227
Target Start/End: Complemental strand, 825 - 676
Alignment:
Q  78 gacatcatcaataccaagttgcaaaaggatgacaatggttctatttctattttcannnnnnnnaaatnnnnnnnnntaatgatatgtcacgatttcattg 177  Q
    ||||| ||| |||||| |||||||||||||||| |||||||| ||||||||||||        ||||         ||||||||||||| ||||||||||    
T  825 gacatgatctataccacgttgcaaaaggatgacgatggttctgtttctattttcattttttttaaataaaaaaaaataatgatatgtcatgatttcattg 726  T
Q  178 gatgtttgtaagtgccacatgttatgtacgtttccatgtaaaaatttctc 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  725 gatgtttgtaagtgccacatgttatgtacgtttccatgtaaaaatttctc 676  T

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Target: scaffold0386; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 1284 - 1333
Alignment:
Q  162 tgtcacgatttcattggatgtttgtaagtgccacatgttatgtacgtttc 211  Q
    ||||| ||||| |||||||||||||||||| |||||||||||||||||||    
T  1284 tgtcatgattttattggatgtttgtaagtgtcacatgttatgtacgtttc 1333  T

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Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 38460872 - 38460945
Alignment:
Q  154 taatgatatgtcacgatttcattggatgtttgtaagtgccacatgttatgtacgtttccatgtaaaaatttctc 227  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  38460872 taatgatatgtcatgatttcattggatgtttgtaagtgccacatgttatgtacgtttctatgtaaaaatttctc 38460945  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 38460469 - 38460427
Alignment:
Q  169 atttcattggatgtttgtaagtgccacatgttatgtacgtttc 211  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  38460469 atttcattggatgtttgtaagtgccacatgttatgtacgtttc 38460427  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 132
Target Start/End: Original strand, 38460794 - 38460848
Alignment:
Q  78 gacatcatcaataccaagttgcaaaaggatgacaatggttctatttctattttca 132  Q
    ||||| ||| |||||| |||||||||||||||| |||||||| ||||||||||||    
T  38460794 gacatgatctataccacgttgcaaaaggatgacgatggttctgtttctattttca 38460848  T

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Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 78 - 227
Target Start/End: Original strand, 13869741 - 13869890
Alignment:
Q  78 gacatcatcaataccaagttgcaaaaggatgacaatggttctatttctattttcannnnnnnnaaatnnnnnnnnntaatgatatgtcacgatttcattg 177  Q
    ||||| ||| |||||| | |||||||||||||| |||||||| ||||||||||||        ||||         ||||||||||||| ||||||||||    
T  13869741 gacatgatctataccacgatgcaaaaggatgacgatggttctgtttctattttcattttttttaaattaaaaaaaataatgatatgtcatgatttcattg 13869840  T
Q  178 gatgtttgtaagtgccacatgttatgtacgtttccatgtaaaaatttctc 227  Q
     ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  13869841 aatgtttgtaagtgccacatgttatgtacgtttctatgtaaaaatttctc 13869890  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 27641421 - 27641494
Alignment:
Q  154 taatgatatgtcacgatttcattggatgtttgtaagtgccacatgttatgtacgtttccatgtaaaaatttctc 227  Q
    ||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||    
T  27641421 taatgatatgtcatgatttcattgaatgtttgtaagtgccacatgatatgtacgtttctatgtaaaaatttctc 27641494  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 13869285 - 13869240
Alignment:
Q  162 tgtcacgatttcattggatgtttgtaagtgccacatgttatgtacg 207  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  13869285 tgtcatgatttcattggatgtttgtaagtgccacatgttatgtacg 13869240  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 27640920 - 27640875
Alignment:
Q  162 tgtcacgatttcattggatgtttgtaagtgccacatgttatgtacg 207  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  27640920 tgtcatgatttcattggatgtttgtaagtgccacatgttatgtacg 27640875  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 132
Target Start/End: Original strand, 27641344 - 27641398
Alignment:
Q  78 gacatcatcaataccaagttgcaaaaggatgacaatggttctatttctattttca 132  Q
    ||||| ||| |||||| | |||||||||||||| |||||||| ||||||||||||    
T  27641344 gacatgatctataccacgatgcaaaaggatgacgatggttctgtttctattttca 27641398  T

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Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 29735174 - 29735101
Alignment:
Q  154 taatgatatgtcacgatttcattggatgtttgtaagtgccacatgttatgtacgtttccatgtaaaaatttctc 227  Q
    |||||||||||||  |||| |||||||||||||||||||||||||||||||| ||||| |||||| ||||||||    
T  29735174 taatgatatgtcataattttattggatgtttgtaagtgccacatgttatgtaagtttctatgtaagaatttctc 29735101  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 29735715 - 29735759
Alignment:
Q  162 tgtcacgatttcattggat--gtttgtaagtgccacatgttatgt 204  Q
    ||||| |||||||||||||  ||||||||||||||||||||||||    
T  29735715 tgtcatgatttcattggatatgtttgtaagtgccacatgttatgt 29735759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 49850892 - 49850835
Alignment:
Q  154 taatgatatgtcacgatttcattggatgtttgtaagtgccacatgttatgtacgtttc 211  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  49850892 taatgatatgtcatgatttcattgaatgtttgtaagtgccacatgttatgtacgtttc 49850835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 211
Target Start/End: Original strand, 49851428 - 49851471
Alignment:
Q  168 gatttcattggatgtttgtaagtgccacatgttatgtacgtttc 211  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  49851428 gatttcattggatgtttgtaagtgccacatgttatgtatgtttc 49851471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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