View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0767_low_23 (Length: 370)

Name: NF0767_low_23
Description: NF0767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0767_low_23
NF0767_low_23
[»] chr4 (2 HSPs)
chr4 (146-341)||(56111631-56111826)
chr4 (149-341)||(56106978-56107170)
[»] scaffold0446 (1 HSPs)
scaffold0446 (147-341)||(10495-10689)
[»] chr8 (2 HSPs)
chr8 (54-148)||(22756054-22756148)
chr8 (148-226)||(1141882-1141960)
[»] chr6 (2 HSPs)
chr6 (153-216)||(26011476-26011539)
chr6 (147-216)||(24373813-24373882)
[»] chr1 (1 HSPs)
chr1 (331-370)||(43953483-43953522)
[»] chr5 (1 HSPs)
chr5 (150-216)||(13863095-13863161)
[»] chr3 (2 HSPs)
chr3 (148-194)||(54430952-54430998)
chr3 (153-194)||(54431771-54431812)


Alignment Details
Target: chr4 (Bit Score: 168; Significance: 6e-90; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 146 - 341
Target Start/End: Complemental strand, 56111826 - 56111631
Alignment:
Q  146 attgagaaatgctattgacaaactctctgtcaaactctttttaacacaccctcttacatgaagccacgtcatctatctaattaataatgttactagttac 245  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  56111826 attgagaaatgttattgacaaactctctgtcaaactctttttaacacaccctcttacatgaagccacatcatctatctaattaataattttactagttac 56111727  T
Q  246 cggttgtccctgttaacagggttatttcttttattttattttccccttattatttgttcaactgctctcacacgtatataaaactccaatgaaatc 341  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||    
T  56111726 cggttgtccctgttaacaaggttatttcttttattttattttccccttattatttgttcaacttctctcacacgtatataaaactcaagtgaaatc 56111631  T

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Target: chr4; HSP #2
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 149 - 341
Target Start/End: Original strand, 56106978 - 56107170
Alignment:
Q  149 gagaaatgctattgacaaactctctgtcaaactctttttaacacaccctcttacatgaagccacgtcatctatctaattaataatgttactagttaccgg 248  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  56106978 gagaaatgcttttgacaaactctctgtcaaactctttttaacacaccctcttacatgaagccacatcatctatctaattaataattttactagttaccgg 56107077  T
Q  249 ttgtccctgttaacagggttatttcttttattttattttccccttattatttgttcaactgctctcacacgtatataaaactccaatgaaatc 341  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||    
T  56107078 ttgtccctgttaaaaaggttatttcttttattttattttccccttattatttgttcaacttctctcacacgtatataaaactcaagtgaaatc 56107170  T

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Target: scaffold0446 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 147 - 341
Target Start/End: Complemental strand, 10689 - 10495
Alignment:
Q  147 ttgagaaatgctattgacaaactctctgtcaaactctttttaacacaccctcttacatgaagccacgtcatctatctaattaataatgttactagttacc 246  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  10689 ttgagaaatgttattgacaaactctctgtcaaactctttttaacacaccctcttacatgaagccacatcatctatctaattaataattttactagttacc 10590  T
Q  247 ggttgtccctgttaacagggttatttcttttattttattttccccttattatttgttcaactgctctcacacgtatataaaactccaatgaaatc 341  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||    
T  10589 ggttgtccctgttaacaaggttatttcttttattttattttccccttattatttgttcaacttctctcacacgtatataaaactcaagtgaaatc 10495  T

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Target: chr8 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 54 - 148
Target Start/End: Complemental strand, 22756148 - 22756054
Alignment:
Q  54 tatatgagacaaactatttgatcttaaaataattcaaatcaattttgtgaattgtataagttaactgatggagcttatttgttaatatacccatt 148  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||    
T  22756148 tatatgagacaaactatttgatctaaaaataattcaaatcaattttgtgaattgtacaacttaactggtggagcttatttgttaatatacccatt 22756054  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 148 - 226
Target Start/End: Complemental strand, 1141960 - 1141882
Alignment:
Q  148 tgagaaatgctattgacaaactctctgtcaaactctttttaacacaccctcttacatgaagccacgtcatctatctaat 226  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||    
T  1141960 tgagaaatgttattgacaaattctctgtcaaactctttttaacacaccctcttacgtgaaaccacgtcatatatctaat 1141882  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 216
Target Start/End: Original strand, 26011476 - 26011539
Alignment:
Q  153 aatgctattgacaaactctctgtcaaactctttttaacacaccctcttacatgaagccacgtca 216  Q
    |||||||||||||||||||||||||||||||||||||||||| | | || ||||||||||||||    
T  26011476 aatgctattgacaaactctctgtcaaactctttttaacacactcccatatatgaagccacgtca 26011539  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 147 - 216
Target Start/End: Original strand, 24373813 - 24373882
Alignment:
Q  147 ttgagaaatgctattgacaaactctctgtcaaactctttttaacacaccctcttacatgaagccacgtca 216  Q
    ||||||||||||||| ||| |||||||||||||||| ||||||||||| | | || ||||||||||||||    
T  24373813 ttgagaaatgctatttacacactctctgtcaaactccttttaacacactcccatatatgaagccacgtca 24373882  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 331 - 370
Target Start/End: Complemental strand, 43953522 - 43953483
Alignment:
Q  331 ccaatgaaatcgtcgccattgattgttggagatagagagt 370  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  43953522 ccaatgaaatcgtcgccattgattgttggagatagagagt 43953483  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 216
Target Start/End: Original strand, 13863095 - 13863161
Alignment:
Q  150 agaaatgctattgacaaactctctgtcaaactctttttaacacaccctcttacatgaagccacgtca 216  Q
    |||||||||||||| ||||| | |||||||||| |||||| |||| | | ||||| |||||||||||    
T  13863095 agaaatgctattgaaaaactatatgtcaaactccttttaatacactcccatacataaagccacgtca 13863161  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 194
Target Start/End: Original strand, 54430952 - 54430998
Alignment:
Q  148 tgagaaatgctattgacaaactctctgtcaaactctttttaacacac 194  Q
    |||| |||||||  |||||||||||||||| ||||||||||||||||    
T  54430952 tgagcaatgctaaggacaaactctctgtcacactctttttaacacac 54430998  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 54431812 - 54431771
Alignment:
Q  153 aatgctattgacaaactctctgtcaaactctttttaacacac 194  Q
    |||||||| |||||||||||||||| ||||||||| ||||||    
T  54431812 aatgctatggacaaactctctgtcacactctttttgacacac 54431771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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