View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0767_low_26 (Length: 347)
Name: NF0767_low_26
Description: NF0767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0767_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 128; Significance: 4e-66; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 16 - 318
Target Start/End: Complemental strand, 6333010 - 6332714
Alignment:
| Q |
16 |
atagctattgtaaaataattaatttcatggnnnnnnncttgttaaactgattttgatatgttaatgtggaagtggaagtctttttgtttggtacaaagtg |
115 |
Q |
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| T |
6333010 |
atagctattgtaaaataattaatttcatggcttttttcttgttgaactgattttgatatgttaatgttgaagt------ctttttgtttggtacaaagtg |
6332917 |
T |
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| Q |
116 |
tgtata--gaacttaataagggcaaaatcggtatgtgtagcttgcattgtagcagctatannnnnnnnnnnnnnnnnnataaattgtagcatcaaactca |
213 |
Q |
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||| | ||| |||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||| ||||||||||| |
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| T |
6332916 |
tgtgtgtggaagttaataagggcaaaatcggtatctgtagcttgcattgtagaagctatatttttattttatttttttataaattgtaccatcaaactca |
6332817 |
T |
|
| Q |
214 |
tgcaaaagaattcattttcgtttcatgaaaacttgcattctctcttcnnnnnnnntatgaaaacttgcctattagataacacaactgctgcaccaccaat |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6332816 |
tgcaaaagaattcattttcgtttcatgaaaacttgcattctctcttcaaaaaaa--atgaaaacttgcatattagataacacaactgctgcaccaccaat |
6332719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 11 - 118
Target Start/End: Complemental strand, 6325527 - 6325426
Alignment:
| Q |
11 |
ataatatagctattgtaaaataattaatttcatggnnnnnnncttgttaaactgattttgatatgttaatgtggaagtggaagtctttttgtttggtaca |
110 |
Q |
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||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
6325527 |
ataatatagctattgtaaaataattaatttcatggttttattctagttgaactgattttgatatgttaat------gtggaagtctttttgtttggtaca |
6325434 |
T |
|
| Q |
111 |
aagtgtgt |
118 |
Q |
| |
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|||||||| |
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| T |
6325433 |
aagtgtgt |
6325426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 192 - 308
Target Start/End: Complemental strand, 6324755 - 6324644
Alignment:
| Q |
192 |
ataaattgtagcatcaaactcatgcaaaagaattcattttcgtttcatgaaaacttgcattctctcttcnnnnnnnntatgaaaacttgcctattagata |
291 |
Q |
| |
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|||||||||||||| |||||||||||||||| || ||||||||| |||||| |||||||||||||||| ||||||||||||||||||| || |
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| T |
6324755 |
ataaattgtagcatgaaactcatgcaaaagagtttattttcgttgcatgaagacttgcattctctctt----aaaaaaatgaaaacttgcctattag-ta |
6324661 |
T |
|
| Q |
292 |
acacaactgctgcacca |
308 |
Q |
| |
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|||||||||| |||||| |
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| T |
6324660 |
acacaactgccgcacca |
6324644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 6220006 - 6220040
Alignment:
| Q |
11 |
ataatatagctattgtaaaataattaatttcatgg |
45 |
Q |
| |
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|||||||||||||||| |||||||||||||||||| |
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|
| T |
6220006 |
ataatatagctattgtgaaataattaatttcatgg |
6220040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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