View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0767_low_27 (Length: 346)
Name: NF0767_low_27
Description: NF0767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0767_low_27 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 94 - 269
Target Start/End: Original strand, 5805242 - 5805417
Alignment:
| Q |
94 |
catcatcatttttacatattcatactgtcctaccacataaaccccattttctagcttgttaatcctctctcctccatcaattttcttctttctcagcaag |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5805242 |
catcatcatttttacatattcatactgtcctaccacataaatcccattttctagcttgttaatcctctctcctccatcaattttcttctttctcagcaag |
5805341 |
T |
|
| Q |
194 |
atcaaaagattgttgttgttgtttcttctctcctccatttttgagcttgccaattctctctcctccgtcagttttc |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5805342 |
atcaaaagattgttgttgttgtttcttctctcctccatttttgagcttgccaattctctctcctccgtcagttttc |
5805417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 204
Target Start/End: Original strand, 5805376 - 5805443
Alignment:
| Q |
137 |
ccattttctagcttgttaatcctctctcctccatcaattttcttctttctcagcaagatcaaaagatt |
204 |
Q |
| |
|
||||||| |||||| ||| ||||||||||| ||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
5805376 |
ccatttttgagcttgccaattctctctcctccgtcagttttcttctttctcagcaatatcaaaagatt |
5805443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 136; Significance: 7e-71; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 111 - 269
Target Start/End: Original strand, 36180015 - 36180174
Alignment:
| Q |
111 |
attcatactgtcctaccacataaaccccattttctagcttgttaatcctctctcctccatcaattttcttcttt-ctcagcaagatcaaaagattgttgt |
209 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
36180015 |
attcatactgccctaccacataaaccccattttcgagcttgttaatcctctctcctccatcaattttcttcttttctcagcaagatcaaaagattgttgt |
36180114 |
T |
|
| Q |
210 |
tgttgtttcttctctcctccatttttgagcttgccaattctctctcctccgtcagttttc |
269 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
36180115 |
tgttgtttcttctctcctccattttcgagcttgccaattctctctcctccgtcaattttc |
36180174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 137 - 205
Target Start/End: Original strand, 36180133 - 36180201
Alignment:
| Q |
137 |
ccattttctagcttgttaatcctctctcctccatcaattttcttctttctcagcaagatcaaaagattg |
205 |
Q |
| |
|
|||||||| |||||| ||| ||||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
36180133 |
ccattttcgagcttgccaattctctctcctccgtcaattttcttctttctcagcaatatcaaaagattg |
36180201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 111 - 269
Target Start/End: Original strand, 11130473 - 11130634
Alignment:
| Q |
111 |
attcatactgtcctaccacataaaccccattttctagcttgttaatcctctctcctccatcaattttcttctttctcagcaagatcaaaaga---ttgtt |
207 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
11130473 |
attcatactgccctaccacataaaccccattttcgagcttgttaatcctctctcctccatcaattttcttctttcttagcaagatcaaaagattgttgtt |
11130572 |
T |
|
| Q |
208 |
gttgttgtttcttctctcctccatttttgagcttgccaattctctctcctccgtcagttttc |
269 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||| |
|
|
| T |
11130573 |
gttgttgtttcttctctcctccattttcgagtttgccaattctctctcctccgtcaattttc |
11130634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 137 - 205
Target Start/End: Original strand, 11130593 - 11130661
Alignment:
| Q |
137 |
ccattttctagcttgttaatcctctctcctccatcaattttcttctttctcagcaagatcaaaagattg |
205 |
Q |
| |
|
|||||||| || ||| ||| ||||||||||| ||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
11130593 |
ccattttcgagtttgccaattctctctcctccgtcaattttcttctttctcagcaatatcaaatgattg |
11130661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 4401 times since January 2019
Visitors: 4835