View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0767_low_3 (Length: 580)
Name: NF0767_low_3
Description: NF0767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0767_low_3 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 82 - 580
Target Start/End: Original strand, 50654274 - 50654771
Alignment:
| Q |
82 |
gatggacatcatcacccttctaccccagtcnnnnnnngtataggatgagagaatggaataacataggttataaacttggtggcttctaaggtgagagagc |
181 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
50654274 |
gatgaacatcatcacccttctaccccagtcaaaaaaagtataggatgagagaatggaataacataggttataaacttggtggcaga-aaggtgagagagc |
50654372 |
T |
|
| Q |
182 |
catcaagttcctcaccagtgtactattggatctattaaaataattaaagggttcagatatattaaaaaattaagagtagcacataagtcttccctcaccc |
281 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50654373 |
catcaagttcctcaccagtgtaccattggatctattaaaataattaaagggttcagatatattaaaaaattaagagtagcacataagtcttccctcaccc |
50654472 |
T |
|
| Q |
282 |
aatccctccttgtttaactctttccctgctaaaccttccttgttatgatgtcttcaccttcaatttacgccactgacttatcttgttttctactcaagtg |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50654473 |
aatccctccttgtttaactctttccctgctaaaccttccttgttatgatgtcttcaccttcaatttacgccactgacttatcttgttttctactcaagtg |
50654572 |
T |
|
| Q |
382 |
taaaatcaattattgttcagcacaaccagaaaagttgcaacccatgataataataacatnnnnnnnggatagtccagtgcaccaaaactcccgcatatgc |
481 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
50654573 |
taaaatcaattattgttcagcacaaccagaaaagttgcgacccatgataataataacataaaaaaaggatagtccagtgcaccaaaagtcccgcatatgc |
50654672 |
T |
|
| Q |
482 |
agggtccagggataacaataacatcaataataacaaataatgggtaaacaggaattcaagacaacaatttatgcaaccaaataaaatccaaaacctata |
580 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50654673 |
agggtccagggataacaataacatcagtaataacaaataatgggtgaacaggaattcacgacaacaatttatgcaaccaaataaaatccaaaacctata |
50654771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3138 times since January 2019
Visitors: 4805