View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0767_low_4 (Length: 574)
Name: NF0767_low_4
Description: NF0767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0767_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 38 - 542
Target Start/End: Original strand, 43657405 - 43657910
Alignment:
| Q |
38 |
gaatagttaaagcgtcagaagagatgggaagaagttgggaag-aagtgcttttgtttgtagccccaaagatgaagtagaagaaacctctgttggtcgctt |
136 |
Q |
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|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
43657405 |
gaatagttaaagcgtcagaagagatgggaagaagttggtcatcaagtgcttttgtttgtagccccaaagatgaagtagaagaaacctctgtaggtcgctt |
43657504 |
T |
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| Q |
137 |
cttctcatgtggctttggggtgaaggagaggttttggaatagacaacaaaacacaaagaaatccgttgaagtaaagtccgaaatttttcttcttcccaat |
236 |
Q |
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| T |
43657505 |
cttctcatgtggctttggggtgaaggagaggttttggaatagacaacaaaacacagagaaatccattgaagtaaagtccgaaatctttcttcttcccgat |
43657604 |
T |
|
| Q |
237 |
gatattcttgaaatgtgtttggatcgtgttccattcgaaagtctcgataatgctaggcttgtgtgcaaaaaatggagttccttacttaccattgctaaag |
336 |
Q |
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| T |
43657605 |
ggtattcttgaaatgtgtttggatcgtgttgcatgcgaaagtctcgataatgctaggcttgtgtgcaaaaaatggagttccttgattaccattgctaaag |
43657704 |
T |
|
| Q |
337 |
tccttcaaaagaaaaaagaatatagatatcaaaatctatggttttttgtctttggtacctgcttgtaatttcactcacaatcctgcctgctcatacagtg |
436 |
Q |
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| T |
43657705 |
tccttcaaaagaaaaaagaatatagatatcaaaatctatggttttttgtctttggtacctgcttgtaattgcactcacaatcctgcctgctcatacagtg |
43657804 |
T |
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| Q |
437 |
atgttaacataatacatgcacttcatatatctcgcaatcaatggcatagtattgatgctgattttctcaaaggaagatactggttctctgtagctagcat |
536 |
Q |
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| T |
43657805 |
atgttaacataatacatgcacttcatatatctcgcaatcaatggcataatatccatgccgattttctcaaaggaaagtaccggttctctgtagctagcat |
43657904 |
T |
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| Q |
537 |
acatgg |
542 |
Q |
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| T |
43657905 |
acatgg |
43657910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 6e-26; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 187 - 327
Target Start/End: Original strand, 10367339 - 10367479
Alignment:
| Q |
187 |
acacaaagaaatccgttgaagtaaagtccgaaatttttcttcttcccaatgatattcttgaaatgtgtttggatcgtgttccattcgaaagtctcgataa |
286 |
Q |
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|||||||| ||| |||||||||| |||| | | | ||||||||||| |||| ||||||||| |||||||||||||| ||||||||||| ||||| | || |
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| T |
10367339 |
acacaaaggaatgcgttgaagtagagtctggactctttcttcttcctgatgacattcttgaattgtgtttggatcgtcttccattcgaaggtctcaagaa |
10367438 |
T |
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| Q |
287 |
tgctaggcttgtgtgcaaaaaatggagttccttacttacca |
327 |
Q |
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| T |
10367439 |
tgttaggcttgtttgcaagaattggagttccttccttacca |
10367479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 201 - 325
Target Start/End: Original strand, 10378878 - 10379002
Alignment:
| Q |
201 |
gttgaagtaaagtccgaaatttttcttcttcccaatgatattcttgaaatgtgtttggatcgtgttccattcgaaagtctcgataatgctaggcttgtgt |
300 |
Q |
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||||||||| |||||||||| ||||||||||| |||| ||||||||| |||||||| || || ||||||| ||||||||| | |||| |||||||| | |
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| T |
10378878 |
gttgaagtacagtccgaaatctttcttcttcctgatgacattcttgaattgtgtttgaattgtcttccatttgaaagtctcaagaatgttaggcttgctt |
10378977 |
T |
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| Q |
301 |
gcaaaaaatggagttccttacttac |
325 |
Q |
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|||| || ||||||||||| ||||| |
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| T |
10378978 |
gcaagaattggagttccttccttac |
10379002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 474 - 564
Target Start/End: Original strand, 10379137 - 10379227
Alignment:
| Q |
474 |
tcaatggcatagtattgatgctgattttctcaaaggaagatactggttctctgtagctagcatacatggcggaatcttcattgttggagga |
564 |
Q |
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||||||||||||||| |||||||| ||||||||||||| | | ||||||||| ||||||||| ||| ||||| |||||||||||||| |
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| T |
10379137 |
tcaatggcatagtatagatgctgacattctcaaaggaaggtccatgttctctgttgctagcataaatgatggaataatcattgttggagga |
10379227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 325
Target Start/End: Original strand, 10371031 - 10371120
Alignment:
| Q |
235 |
atgatattcttgaaatgtgtttggatcgtgttccattcgaaagtctcgataatgctaggcttgtgtgcaaaaaatggagttccttacttac |
325 |
Q |
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||||||||||| |||||||||||| | || ||||| || ||||| | | ||||||||||| |||| |||| |||||||||||||| |||| |
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| T |
10371031 |
atgatattcttcaaatgtgtttgggtggt-ttccactcaaaagttcctagaatgctaggctcgtgttcaaataatggagttccttaattac |
10371120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 198
Target Start/End: Original strand, 10367262 - 10367314
Alignment:
| Q |
146 |
tggctttggggtgaaggagaggttttggaatagacaacaaaacacaaagaaat |
198 |
Q |
| |
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|||||| |||||||||||| |||||||||| || ||||| ||| ||||||||| |
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| T |
10367262 |
tggcttcggggtgaaggagtggttttggaagaggcaacacaacccaaagaaat |
10367314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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